BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75410.1
Length=2139
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476691 jgi|Araly1|476691|fgenesh2_kg.2__1821__AT1G75410.1 3061 0.0
> Ahg476691 jgi|Araly1|476691|fgenesh2_kg.2__1821__AT1G75410.1
Length=2084
Score = 3061 bits (1657), Expect = 0.0
Identities = 1983/2128 (93%), Gaps = 71/2128 (3%)
Strand=Plus/Plus
Query 33 AAAAATCGTCTCTTGGGATTGGGTGtcttctctt-tctttctctctctttttgtcatcga 91
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 AAAAATCGTCTCTTGGGATTGGGTGTCTTCTCTTCTCTTTCTCTCTCTTTTTGTCATCGA 60
Query 92 ctgttcgaagttcttcttcttctccctttttatctctctGTTCCCTGATTCAGCCACATC 151
|||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 61 CTGTTCGAAG---TTCTTCTTCT-CCTTTTTA--TCTCTGTTCCCTGATTCAGCCACATC 114
Query 152 CAC-A-A--TCTCTCTTT-CTCTTTTGTATAGTTTATCA----TCTAGCTCTTTCTCAGA 202
||| | | ||||||||| |||| | ||||||||| ||| ||||||||||||
Sbjct 115 CACAACATCTCTCTCTTTAGGGTTTT-AAAAGTTTATCATCTCTCTCTCTCTTTCTCAGA 173
Query 203 CAAAACATCAATCGGATGAAACTCACTTAAACAACAAAACACTTTCGATTTATTATCCAA 262
|||||||||||||||||||||||||||| | ||| | | | | | ||||||
Sbjct 174 CAAAACATCAATCGGATGAAACTCACTT--A-AAC---A-A----C-A---A--ATCCAA 216
Query 263 TGGCTGTGTATTACCCTAATAGTGTCGGCATGCAATCTCTTTACCAAGAATCCATTTACC 322
|||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||
Sbjct 217 TGGCTGTGTATTACCCAAATAGTGTCGGCATGCAATCTCTCTATCAAGAATCCATTTACC 276
Query 323 TCAACGaacaacaacaacaacaacaacaaGCTTCTTCTTCCTCTGCTGCATCTTTCTCCG 382
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 277 TCAACG------AACAACAACAACAACAAGCTTCTTCTTCCTCTGCTGCATCTTTCTCTG 330
Query 383 AGATTGTTTCCGGTGATGTTCGAAACAACGAGATGGTATTTATCCCACCAACAAGCGACG 442
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 AGATTGTCTCCGGCGATGTTCGAAACAACGAGATGGTATTTATCCCACCAACAAGCGACG 390
Query 443 TAGCCGTCAACGGAAACGTAACGGTGTCAAGTAACGATCTAAGCTTTCACGGTGGAGGAC 502
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 391 TTGCCGTCAACGGAAACGTAACGGTGTCAAGTAACGATCTAAGTTTTCACGGTGGAGGTC 450
Query 503 TTTCTTTAAGTCTTGGTAATCAGATCCAGTCAGCTGTCTCTGTTTCTCCGTTTCAGTATC 562
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 451 TTTCTTTAAGCCTTGGTAATCAGATCCAATCAGCTGTCTCTGTTTCTCCGTTTCAGTATC 510
Query 563 ATTACCAGAATCTTTCGAACCAATTGAGTTACAATAATCTTAATCCTTCTACTATGTCTG 622
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 511 ATTACCAGAATCTTTCAAACCAATTGAGTTACAATAATCTTAATCCTTCCACTATGTCTG 570
Query 623 ATGAGAATGGGAAGAGCTTGAGT-GT--T------CATCAGCATCACTCTGATCAAATTT 673
||||| ||||||||||||||||| || | || || |||||||||||||||||
Sbjct 571 ATGAGGATGGGAAGAGCTTGAGTGGTCATCACCAACAACATCATCACTCTGATCAAATGA 630
Query 674 TACCTTCCTCTGTTTACAACAACAATGGTAATAATGGTGTTGGATTCTACAACAATTACC 733
|||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 631 TACCTTCCTCTGGTTACAACAACAATGG---TAATGGTGTTGGTTTCTACAACAATTACC 687
Query 734 GTTACGAGACATCAGGGTTTGTGAGTAGTGTACTGAGATCTCGTTACCTTAAACCAACAC 793
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 688 GTTACGAGACATCAGGGTTTGTGAGTAGTGTTCTGAGATCTCGTTACCTTAAACCAACAC 747
Query 794 AACAATTGCTTGATGAAGTTGTTAGTGTAAGGAAAGATTTGAAATTGGGGAATAAGAAGA 853
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 748 AGCAATTGCTTGATGAAGTTGTTAGTGTAAGGAAAGATTTGAAATTGGGGAATAAGAAGA 807
Query 854 TGAAGAATGATAAAGGTCAAGACTTTCACAATGGGTCTAGTGATAACATTACAGAAGATG 913
||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 808 TGAAGAACGATAAAGGTCAAGACTTTCAAAATGGGTCGAGTGATAACATTACAGAAGATG 867
Query 914 ATAAATCTCAATCGCAGGAGTTGTCTCCTTCAGAACGTCAGGAGCTACAGAGCAAGAAGA 973
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 868 AGAAATCTCAATCGCAGGAGTTATCTCCTTCAGAACGTCAGGAGCTACAGAGCAAGAAGA 927
Query 974 GCAAGCTTTTAACAATGGTGGATGAGGTAGATAAAAGGTATAACCAATACCATCATCAAA 1033
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 928 GCAAGCTCTTAACAATGGTGGATGAGGTAGATAAAAGGTATAACCAATACCACCATCAAA 987
Query 1034 TGGAAGCTTTAGCATCGTCTTTCGAGATGGTAACAGGTCTTGGAGCAGCTAAGCCTTACA 1093
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 TGGAAGCTTTAGCATCGTCTTTCGAGATGGTAACAGGTCTTGGAGCAGCTAAGCCTTACA 1047
Query 1094 CATCCGTAGCTCTGAATAGAATCTCTCGCCATTTCCGCTGTTTACGCGACGCGATAAAAG 1153
|||| || |||||||||||||||||||||||||||||||| || ||||| ||||||||||
Sbjct 1048 CATCGGTCGCTCTGAATAGAATCTCTCGCCATTTCCGCTGCTTGCGCGATGCGATAAAAG 1107
Query 1154 AACAGATTCAGGTGATCAGAGGGAAGCTTGGGGAGAGAGAGACTTCTGATGAACAAGGAG 1213
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1108 AGCAGATTCAGGTAATCAGAGGGAAGCTTGGGGAGAGAGAGACTTCTGATGAACAAGGAG 1167
Query 1214 AGAGGATACCGCGTCTTAGGTACTTAGATCAACGGTTGAGACAACAGAGAGCTTTGCATC 1273
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1168 AGAGGATACCGCGTCTGAGGTATTTAGATCAACGGTTGAGACAACAGAGAGCTTTGCATC 1227
Query 1274 AACAACTTGGAATGGTTAGACCAGCTTGGAGACCACAAAGAGGCTTACCTGAAAACTCTG 1333
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1228 AACAGCTTGGAATGGTTAGACCAGCTTGGAGACCACAAAGAGGCTTACCTGAAAACTCTG 1287
Query 1334 TCTCTATACTTCGAGCTTGGCTCTTTGAGCATTTCCTTCATCCATATCCTAAAGAATCAG 1393
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1288 TCTCTATACTCCGAGCTTGGCTCTTTGAGCATTTCCTTCATCCATATCCTAAAGAATCAG 1347
Query 1394 AGAAAATCATGCTTTCAAAGCAGACAGGACTATCGAAAAACCAGGTTGCAAATTGGTTTA 1453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1348 AGAAAATCATGCTTTCAAAGCAGACAGGACTATCGAAAAACCAGGTTGCAAATTGGTTTA 1407
Query 1454 TTAACGCGAGAGTTCGACTATGGAAACCAATGATTGAAGAGATGTATAAAGAAGAGTTTG 1513
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1408 TTAACGCGAGAGTTCGACTATGGAAACCGATGATCGAAGAGATGTATAAAGAAGAGTTTG 1467
Query 1514 GAGAATCAGCAGAGTTACTCTCTAACTCTAATCAAGACACCaaaaaaaTGCAGGAAACAT 1573
|||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1468 GAGACTCAGCAGAGTTACTATCTAACTCTAATCAAGACACCAACAAAATGCAGGAAACAT 1527
Query 1574 CTCAGCTCAAACACGAAGACTCTTCGTCTTCGCAACAACAGAATCAGGGAAACAACAACA 1633
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1528 CTCACCTCAAACACGAAGACTCTTCGTCTTCGCAACAACAGAATCAGGGAAACAACAACA 1587
Query 1634 ACAACATCCCATATACATCTGATGCAGAACAAAACCTAGTCTTTGCAGATCCTAAACCAG 1693
|||||||||||||||| |||||| ||||||| ||||| |||||||| |||||||
Sbjct 1588 ------TCCCATATACATCTGACGCAGAAGAAAACCTCGTCTTCGCAGATCCCAAACCAG 1641
Query 1694 ACCGTGCTACTACTGGAGATTACGACAGCTTGATGAACTATCATGGGTTTGGTATTGATG 1753
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1642 ACCGTGCTACTACTGGAGATTACGACAGCTTGATGAACTATCATGGGTTTGGTATCGATG 1701
Query 1754 ATTACAATCGTTACGTTGGCCTTGGAAACCAACAAGATGGCAGATATTCTAATCCCCATC 1813
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1702 ATTACAATCGATACGTTGGCCTTGGAAACCAACAAGATGGCAGATATTCTAATCCCCATC 1761
Query 1814 AATTACACGACTTTGTTGTCTAAAAGATTCCTGAGCTTTTCACAAGCTTAAGAACTGGCA 1873
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1762 AATTACACGACTTTGTTGTCTAAAAGGTTTCTGAGCTTTTCACAAGCTTAAGAACTGGCA 1821
Query 1874 ATGCCAGTTGATTGGGGGAGTATGATTCTTGAAGCGCAAGAAAATGCGCTCTTGGCATTT 1933
|||| |||| |||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1822 ATGC--GTTGGTTGGGG-AGTTTGATTCTTGAAGCGCAAGAAAATGCGCTCTTGGCATTT 1878
Query 1934 TTATAGATAGGGGTTATACAAATAT-------GTATATCTGTAATATTTGTTGTGGCATA 1986
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 1879 TTATAGATAGGGGTTATATAAATATACAATATGTATATCTGTAATATTTGTTGTGGCATA 1938
Query 1987 TATAAAGGATAGATTTTGTGAAAACTTTAGGTGTTAGACTTTACATTTGTATATGAAAAT 2046
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1939 TATAAAGGATAGATTTTGTGAAAACTGTAGGTGTTAGACTTTACATTTGTATATGAAAAT 1998
Query 2047 TGAGCTTTGTGTACACTTTGGTAAGCCGATATTGTAATGTTTTTGTTTATAA-TCTTCAT 2105
||||| || |||||||||||||||||| ||||||||| ||||| || || || ||||||
Sbjct 1999 TGAGCCTTATGTACACTTTGGTAAGCCAATATTGTAACGTTTT-GTGTA-AACTCTTCAA 2056
Query 2106 GATGGTATAAACAATACTTTTAAGTGTG 2133
| |||||||||||||||||| |||||||
Sbjct 2057 GGTGGTATAAACAATACTTTCAAGTGTG 2084
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80484687685
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5