BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75450.1
Length=2711
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476695 jgi|Araly1|476695|fgenesh2_kg.2__1825__AT1G75450.1 3378 0.0
> Ahg476695 jgi|Araly1|476695|fgenesh2_kg.2__1825__AT1G75450.1
Length=2577
Score = 3378 bits (1829), Expect = 0.0
Identities = 2203/2373 (93%), Gaps = 67/2373 (3%)
Strand=Plus/Plus
Query 1 ATAAACGCACAAACTCGTTAAATTTGTACGAATATAAttttttttAAAA-CACTCGTTAT 59
||||||||| ||||||| |||||||||||| | |||| | |||||| ||||||||||
Sbjct 1 ATAAACGCATAAACTCGATAAATTTGTACG---A-AATTAATATTAAAACCACTCGTTAT 56
Query 60 A-A----T-AT---ATTAAAGTTTCACCCAAACCG-AAAAAAGA-GAGAATCTGTGCATG 108
| | | || ||||||||||||||||| ||| |||||||| |||||||||||||||
Sbjct 57 ATATTTTTAATAAGATTAAAGTTTCACCCAACCCGAAAAAAAGAGGAGAATCTGTGCATG 116
Query 109 TTGCTCAGAAAATCTTCAAAGCGTAATCTGGGCTTACGTTAGCTCTCACGAACCCCCAAG 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 TTGCTCAGAAAATCTTCAAAGCGTAATCTGGGCTTACGTTAGCTCTCACGAACCCCCAAG 176
Query 169 G--AT-CT-TCTATATATGTTTTTTCATTTCCCCATAAAATCTTTCATTATCT-AAAAAA 223
| || || | |||||||||||||||||||||||||||||| |||| |||||| ||||||
Sbjct 177 GATATCCTATATATATATGTTTTTTCATTTCCCCATAAAATTTTTCGTTATCTAAAAAAA 236
Query 224 TATTATTATCGTAT-CTTTTTTCTTCTATATATTCTTCCTCCTCAATCTTGATTCTTGTT 282
||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 237 AATTATTATCGTATATTTTTTTCTTCTATATATTCTTTCTCCTCGATCTTGATTCTTGTT 296
Query 283 TCTTGAGTA-TTCTTTGATGAATCGTGAAATGACGTCAAGCTTTCTTCTCCTGACGTTCG 341
|||||| || || ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 297 TCTTGACTATTTATTTGATGAATCGTGAAATGACGTCAAGCTTTCTTCTCATGACGTTCG 356
Query 342 CCATATGTAAACTGATCATAGCCGTGGGTCTAAACGTGGGCCCCAGTGAGCTCCTCCGCA 401
| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 357 CTATATGTAAACTGATCATAGCCGTTGGTCTAAACGTGGGCCCCAGTGAGCTTCTCCGCA 416
Query 402 TCGGAGCCATAGATGTCGACGGCCACTTCACCGTCCACCCTTCCGACTTAGCCTCCGTCT 461
||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
Sbjct 417 TCGGAGCCATAGATGTCGATGGCCACTTCACCGTCCACCCTTCCGCCTTAGCCTCCGTAT 476
Query 462 CCTCAGACTTCGGTATGCTGAAGTCACCTGAAGAGCCATTGGCCGTGCTTCATCCATCAT 521
| || |||||||||||||||| ||| || ||||||||| | |||||||| ||||| || |
Sbjct 477 CGTCTGACTTCGGTATGCTGAGGTCGCCGGAAGAGCCACTAGCCGTGCTACATCCTTCCT 536
Query 522 CGGCCGAAGACGTGGCACGACTCGTCAGAACAGCTTACGGTTCAGCCACGGCGTTTCCGG 581
|||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 537 CGGCCGAAGACGTGGCGCGACTCGTCAGAACAGCTTATGGTTCGGCCACGGCGTTTCCGG 596
Query 582 TCTCAGCCCGAGGCCACGGCCATTCCATAAACGGACAAGCCGCGGCGGGGAGGAACGGTG 641
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TCTCAGCCCGAGGCCATGGCCATTCCATAAACGGACAAGCCGCGGCGGGGAGGAACGGTG 656
Query 642 TGGTGGTTGAAATGAACCACGGCGTAACCGGGACGCCCAAGCCACTCGTCCGACCGGATG 701
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 657 TTGTGGTTGAAATGAACCACGGCGTAACCGGGACGCCGGAGCCACTCGTCCGACCGGATG 716
Query 702 AAATGTATGTGGATGTATGGGGTGGAGAGTTATGGGTCGATGTGTTGAAGAAAACGTTGG 761
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 AAATGTATGTGGACGTTTGGGGTGGAGAGTTATGGGTCGATGTGTTGAAGAAAACGTTGG 776
Query 762 AGCATGGCTTAGCACCAAAATCATGGACGGATTACTTGTATCTAACCGTTGGAGGTACAC 821
|| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 777 AGTATGGCTTAGCACCAAAATCATGGACTGATTACTTGTACCTAACCGTTGGAGGTACAC 836
Query 822 TCTCCAATGCAGGAATCAGTGGTCAAGCTTTTCACCATGGTCCTCAAATTAGTAACGTCC 881
|||||||||||||||| || |||||||||||||||||||||||||| ||| ||||||||
Sbjct 837 TCTCCAATGCAGGAATTAGCGGTCAAGCTTTTCACCATGGTCCTCAGATTTCTAACGTCC 896
Query 882 TTGAGCTCGACGTTGTAACTGGGAAAGGAGAGGTGATGAGATGCTCAGAAGAAGAGAACA 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 TTGAGCTCGACGTTGTAACTGGGAAAGGAGAGGTGATGAGATGCTCAGAAGAAGAGAACA 956
Query 942 CAAGGCTATTCCATGGAGTTCTTGGTGGATTAGGTCAATTTGGGATCATCACTCGAGCAC 1001
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 957 CAAGGCTATTCCATGGAGTTCTTGGTGGGTTAGGTCAATTTGGGATCATCACTCGAGCAA 1016
Query 1002 GAATCTCTCTCGAACCAGCTCCCCAAAGGGTGAGATGGATACGGGTATTGTATTCGAGCT 1061
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1017 GAATCTCTCTCGAACCTGCTCCCCAAAGGGTAAGATGGATACGGGTATTGTATTCGAGCT 1076
Query 1062 TCAAAGTGTTTACGGAGGACCAAGAGTACTTAATCTCAATGCATGGTCAATTAAAGTTTG 1121
||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1077 TCAAAGTGTTTACAGAGGACCAAGAGTACTTAATCTCGATGCATGGTCAGTTAAAGTTTG 1136
Query 1122 ATTACGTGGAAGGTTTTGTGATTGTGGACGAAGGACTCGTCAACAATTGGAGATCTTCTT 1181
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1137 ATTACGTGGAAGGTTTTGTGATTGTGGACGAAGGTCTCGTCAACAATTGGAGATCTTCTT 1196
Query 1182 TCTTCTCTCCACGTAACCCCGTCAAGATCTCCTCTGTTAGTTCCAACGGCTCTGTTTTGT 1241
||||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1197 TCTTCTCCCCACGCAACCCCGTCAAGATCTCCTCTGTGAGTTCTAACGGCTCTGTTTTGT 1256
Query 1242 ATTGCCTTGAGATCACCAAGAACTACCACGACTCCGACTCCGAAATCGTTGATCAGGAAG 1301
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1257 ATTGCCTGGAGATCACCAAGAACTACCACGACTCCGACTCCGAAACCGTTGATCAGGAAG 1316
Query 1302 TTGAGATTCTGATGAAGAAATTGAATTTCATACCGACATCGGTCTTTACAACGGATTTAC 1361
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 TAGATATTCTGATGAAGAAATTGAATTTCATACCGACATCGGTCTTTACAACGGATTTAC 1376
Query 1362 AATATGTGGACTTTCTCGACCGGGTACACAAGGCCGAATTGAAGCTCCGGTCCAAGAATT 1421
| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1377 AGTATGTAGACTTTCTCGACCGGGTACACAAGGCGGAATTGAAGCTCCGGTCCAAGAATT 1436
Query 1422 TATGGGAGGTTCCACACCCATGGCTCAACCTCTTCGTGCCAAAATCAAGAATCTCTGACT 1481
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1437 TATGGGAGGTTCCACATCCATGGCTCAACCTCTTCGTGCCAAAATCAAGAATCTCTGATT 1496
Query 1482 TCGATAAAGGCGTTTTCAAGGGCATTTTGGGAAATAAAACAAGTGGCCCTATTCTTATCT 1541
| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1497 TTGACAAAGGCGTTTTCAAGGGCATTTTGGGAAATAAAACAAGTGGCCCTATCCTTATCT 1556
Query 1542 ACCCCATGAACAAAGACAAATGGGACGAGAGGAGCTCAGCCGTGACGCCGGATGAGGAAG 1601
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1557 ACCCCATGAACAAAGACAAATGGGACGAGAGGAGCTCAGCGGTGACGCCGGATGAGGAAG 1616
Query 1602 TTTTCTATCTGGTGGCTCTATTGAGATCAGCTTTAACGGACGGTGAAGAGACACAGAAGC 1661
|||||||||||||||||||||||||||||||||||| ||| ||||| ||||| |||||||
Sbjct 1617 TTTTCTATCTGGTGGCTCTATTGAGATCAGCTTTAAAGGATGGTGAGGAGACGCAGAAGC 1676
Query 1662 TAGAGTATCTGAAAGATCAGAACCGTCGGATCTTGGAGTTCTGTGAACAAGCCAAGATCA 1721
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 TCGAGTATCTGAAAGATCAGAACCGTCGGATCTTGGAGTTCTGTGAACAAGCCAAGATCA 1736
Query 1722 ATGTGAAGCAGTATCTTCCTCACCACGCAACACAGGAAGAGTGGGTGGCTCATTTTGGGG 1781
||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 1737 ATGTGAAGCAGTACCTTCCCCACCACGCAACACAGGAAGAGTGGGAGGCTCATTTTGGGG 1796
Query 1782 ACAAGTGGGATCGGTTCAGAAGCTTAAAGGCTGAGTTTGATCCGCGACACATACTCGCTA 1841
|||||||||||||||||||||| || ||||| ||||||||||||||||| ||||| ||||
Sbjct 1797 ACAAGTGGGATCGGTTCAGAAGGTTGAAGGCCGAGTTTGATCCGCGACATATACTTGCTA 1856
Query 1842 CTGGTCAGAGAATCTTTCAAAACCCATCTTTGTCTTTGTTTCCTCCGTCGTCGTCTTCTT 1901
||||||||||||||||||| ||||||||| |||||||||||||||||| | ||||||||
Sbjct 1857 CTGGTCAGAGAATCTTTCAGAACCCATCTCTGTCTTTGTTTCCTCCGT--T-GTCTTCTT 1913
Query 1902 CGTCAGCGGCTTCATGGTGACACAGGACAAAACCAAGAGGAAAGTAGTAGTTGAGAAATA 1961
|| || |||||||||||| || |||||||||| |||||||||||||||||||||||
Sbjct 1914 CG---GC---TTCATGGTGACA-AG-ACAAAACCAA-AGGAAAGTAGTAGTTGAGAAATA 1964
Query 1962 TTCTTCCTGATGTATATATATGACCTAATAGAGAAGCATCAGAGAGATTAGGTTGGGTCT 2021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1965 TTCTTCCTGATGTATATATATGACCTAATAGAGAAGCATCAGAGAGATTAGGTTGGGTCT 2024
Query 2022 TTTGTTAGTAGGGGTTTTAAAATTAGAGTAGAAGATTCAAAATTAGTCAAATTTATTGTG 2081
||||||||||||||||| ||||||||||||||||||||| | ||||| || |||||||||
Sbjct 2025 TTTGTTAGTAGGGGTTTAAAAATTAGAGTAGAAGATTCAGA-TTAGT-AA-TTTATTGTG 2081
Query 2082 TTGTTTTTATACATCACGGATTTTGGAAATGGGTTTGGGACAGCTTAAA-CC-----C-A 2134
||||||||||||||||||||||||||| |||||||||||||||||| || || | |
Sbjct 2082 TTGTTTTTATACATCACGGATTTTGGAGATGGGTTTGGGACAGCTTGAAGCCTTAAACCA 2141
Query 2135 -ATTAAATT-AAAAATAGACAACAAACCTCAAAGACTGTTTTGGACTATTTTACAttttt 2192
|||||||| |||||||||||||||||||| | | || | | ||||| |
Sbjct 2142 GATTAAATTTAAAAATAGACAACAAACCTCTA----T-TT----A--A-----CATTTGT 2185
Query 2193 tttGGTTGATCGAGGTTT-ATACTTTATCGTCGTGGAACCACCATCGGGTCTCCTTTGGA 2251
|||||| | |||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2186 TTTGGTCAAACGAG-TTTCATACTTTATCGTCGTGGAACCACCATCGGGTCTCCTTTGGA 2244
Query 2252 GATCTTCCGTTCTTACAATTCTTCACATATCGGTCATTATCGGTTGGTCGTTGCTGCAAC 2311
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2245 GATCTTCCATTCTTACAATTCTTCACATATCGATCATTATCGGTTGGTCGTTGCTGCAAC 2304
Query 2312 AAAAC-AAGCCAAGCGAGACGAAGGTTCAGCTT 2343
||||| || ||||| ||| |||||||||||||
Sbjct 2305 AAAACCAA-CCAAGTAAGAGGAAGGTTCAGCTT 2336
Score = 228 bits (123), Expect = 2e-58
Identities = 175/200 (88%), Gaps = 4/200 (2%)
Strand=Plus/Plus
Query 2387 AGAGCTGTAAGTACCTTTTCAGTCGAGCTTGAGAGCATGGAGAGGATGCTAATGCAGATA 2446
||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||| |
Sbjct 2354 AGAGCTGTATGTACCTTTTCAGTCGAGCTTGAGAGCATGGAAAGGATGCTGATGCAGACA 2413
Query 2447 GAACTCACCGTCATGGCTGGAGACCACGAATCATACAAAATATCTGCAACGATGATACAC 2506
|| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2414 GAGCTAACCGTCATGGCTGGAGACCACGAATCATACAAAATATCTGCAAAAATGATACAC 2473
Query 2507 AACATCAGATACTTCTTCCAG-GAGGCCTATGTTAAATAATAAGC-TACTGAAATTTGAG 2564
|||||||||| ||||||| | | |||||| ||| |||||||| | | | | | ||||
Sbjct 2474 AACATCAGATTCTTCTTCG-GTGTGGCCTAAGTTTAATAATAATAATGCGGGA-TATGAG 2531
Query 2565 TGTACCCTTGGATCTAAAAG 2584
|||||| ||| |||||||||
Sbjct 2532 TGTACCGTTGTATCTAAAAG 2551
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102272307825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5