BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75500.1
Length=1817
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476699 jgi|Araly1|476699|fgenesh2_kg.2__1829__AT1G75500.1 2654 0.0
> Ahg476699 jgi|Araly1|476699|fgenesh2_kg.2__1829__AT1G75500.1
Length=1757
Score = 2654 bits (1437), Expect = 0.0
Identities = 1647/1743 (94%), Gaps = 35/1743 (2%)
Strand=Plus/Plus
Query 2 TGGTGGTTCCCACAAGCAAAGAGGGGAATGAGATTGCTATCTACCTATATTTATATCTCC 61
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 1 TGGTGGTTCCCACAAGCAAAGAGAGGAATGAGATAGCTATCTACCTATATTTATATCTCC 60
Query 62 GCAACTTCACTCTTTTCCTCAATCAacacacacaaacacacacacaca-caGCCTTTTTC 120
||||||||||||||||||||||||||||||||||||| ||||||||| || || || ||
Sbjct 61 ACAACTTCACTCTTTTCCTCAATCAACACACACAAACATACACACACAGCA-CC-TTCTC 118
Query 121 CTTCG-TTGATCGATTGTTAAGCTCGATCCAATGGCGGATAACA-C-----CGATAATCG 173
| ||| ||||| ||||||| || ||||||||||||||||||||| | |||||||||
Sbjct 119 CATCGTTTGATAGATTGTTTAGTTCGATCCAATGGCGGATAACACCGGAAACGATAATCG 178
Query 174 GAGATCCTTATGGGGAGTTCCGGAGAAGCTTCAGCTTCACATAGCGATGCTGACGTTGCA 233
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GAGATCGTTATGGGGAGTTCCGGAGAAGCTTCAGCTTCACATAGCGATGCTGACGTTGCA 238
Query 234 ATTCGGTTACGCCGGATTCCACGTGGTGTCTCGAGCTGCTCTTAACATGGGAATCAGCAA 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 ATTCGGTTACGCCGGATTCCACGTGGTGTCTCGAGCTGCTCTTAACATGGGAATCAGCAA 298
Query 294 ACTCGTCTTCCCTGTTTATCGTAACATCATCGCCTTGCTTCTTCTCCTTCCCTTCGCTTA 353
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 299 ACTCGTCTTCCCTGTTTATCGTAACATCATCGCCTTGCTTCTTCTCCTTCCATTCGCTTA 358
Query 354 CTTCCTTGAAAAGAAGGAGAGACCAGCGATTACTCTCAACTTTCTCATCCAGTTCTTCTT 413
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 359 CTTCCTCGAAAAGAAGGAGAGGCCAGCGATTACTCTCAACTTTCTCATCCAGTTCTTCTT 418
Query 414 TTTGGCACTCATAGGAATAACAGCGAACCAAGGATTTTACTTGTTGGGACTGGACAACAC 473
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 419 TTTGGCACTCATCGGAATAACAGCGAACCAAGGGTTTTACTTGTTGGGACTGGACAACAC 478
Query 474 TTCACCAACATTTGCTTCCTCCATGCAAAACTCTGTTCCCGCCATTACCTTTCTCATGGC 533
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TTCACCAACATTTGCTTCTTCCATGCAAAACTCTGTTCCCGCCATTACCTTTCTCATGGC 538
Query 534 TGCTCTTCTCAGGATTGAGAAAGTAAGAATAAACAGAAGAGACGGTATCTCCAAAATCTT 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 539 TGCTCTTCTCAGGATTGAGAAAGTAAGAATAAACAGAAGAGACGGTATCTCCAAAGTCTT 598
Query 594 AGGAACAGCTCTTTGTGTCGCCGGAGCTTCCGTCATCACCCTCTATAAAGGTCCAACCAT 653
|||||||||||||||||||||||||||||| |||||||| ||||| || |||||||||||
Sbjct 599 AGGAACAGCTCTTTGTGTCGCCGGAGCTTCTGTCATCACTCTCTACAAGGGTCCAACCAT 658
Query 654 CTACACTCCGGCTAGCCACCTCCACGCTCATCTACTCACCACAAACTCCGCCGTCTTAGC 713
|||||| ||| | |||||||||||| ||||||||||||||||||||||||| |||||| |
Sbjct 659 CTACACCCCGACCAGCCACCTCCACACTCATCTACTCACCACAAACTCCGCAGTCTTAAC 718
Query 714 GCCGCTAGGAAACGCCGCGCCTAAAAACTGGACCCTTGGTTGCATCTACCTAATCGGTCA 773
||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 719 GCCTTTAGGAGACGCCGCGCCTAAAAACTGGACCCTTGGTTGTATCTACCTAATCGGTCA 778
Query 774 CTGTCTCTCGTGGTCAGGCTGGCTTGTTTTCCAAGCTCCGGTTCTTAAGTCTTATCCAGC 833
||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| || ||
Sbjct 779 CTGCCTCTCGTGGTCAGGCTGGCTCGTTTTCCAAGCTCCGGTTCTTAAATCTTACCCGGC 838
Query 834 GAGGCTCTCGGTTACGTCTTACACTTGTTTCTTCGGAATCATTCAGTTCTTGATCATTGC 893
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 839 GAGGCTCTCGGTTACGTCTTACACTTGTTTCTTCGGGATCATTCAGTTCTTGATCATCGC 898
Query 894 TGCTTTCTGTGAAAGAGATTCTCAGGCTTGGGTTTTTCACTCCGGTTGGGAGCTTTTCAC 953
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 899 TGCTTTCTGTGAAAGAGAATCTCAGGCGTGGGTTTTTCACTCCGGTTGGGAGCTTTTCAC 958
Query 954 CATCCTCTACGCCGGAATCGTAGCGTCTGGAATCGCGTTTGCGGTTCAGATTTGGTGTAT 1013
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 959 CATCCTCTACGCCGGAATCGTAGCGTCTGGAATCGCGTTTGCCGTTCAGATTTGGTGTAT 1018
Query 1014 TGACAGAGGGGGTCCAGTCTTCGTTGCTGTTTACCAGCCTGTTCAGACTCTTGTCGTTGC 1073
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1019 TGACAGAGGAGGTCCAGTCTTCGTTGCTGTTTACCAACCTGTTCAGACTCTTGTCGTTGC 1078
Query 1074 GATCATGGCTTCTATTGCGTTAGGCGAAGAATTTTATTTGGGCGGGATTATTGGAGCGGT 1133
|||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1079 GATCATGGCTTCGATTGCGTTAGGCGAAGAGTTTTACTTGGGCGGGATTATTGGAGCGGT 1138
Query 1134 CTTGATCATAGCGGGACTTTACTTCGTATTGTACGGTAAGAGCGAAGAGAGGAAATTTGC 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 CTTGATCATAGCGGGACTTTACTTCGTATTGTACGGTAAGAGCGAAGAGAGGAAATTTGC 1198
Query 1194 AGCGCTTGAGAAGGCAGCGATCCAGTCCTCCGCGGAGCATGGTATTGAACGTGCACCTGT 1253
|||||| ||||||||| | |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1199 AGCGCTAGAGAAGGCAACAATCCAGTCCTCCGCGGAGCATGGTATCGAACGTGCACCTGT 1258
Query 1254 TTCTCGCAACTCCATCAAGTCGTCCATCACAACACCACTACTCCATCAGTCAACGGACAA 1313
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1259 TTCTCGCAACTCCATCAAGTCGTCCATCACAACTCCACTACTCCATCAGTCAACGGACAA 1318
Query 1314 TGTTTGACTACTTTGGACAAATCACTCTCCAGCTAATAATTACAAATGCCATTACCCAAT 1373
||||||||| || ||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1319 CGTTTGACTAATT-GGACACATCTTTCTCCAGCTAATAATTACAAATGCCATTACCCAAT 1377
Query 1374 TAAAAGGGAACAATGGTGTGCCGTTGTGttttatgacttttgtgtctgctttttttctta 1433
|||||||||| |||||||||||||||||||||||| |||||||||||| ||||||| |||
Sbjct 1378 TAAAAGGGAAAAATGGTGTGCCGTTGTGTTTTATGGCTTTTGTGTCTGTTTTTTTTTTTA 1437
Query 1434 gtgttttctcttcttttttttttCTAAAAAATTATTAATTACCTAAGAAAGGTTTTTGAA 1493
||||||||||| |||||| || |||||||||||||||||||||||||||||
Sbjct 1438 GTGTTTTCTCT-CTTTTT-------AA----TTATTAATTACCTAAGAAAGGTTTTTGAA 1485
Query 1494 GAAAGGaaaaaaaa----TGGTGGATGAGACATCATTGTTCatgaggatgatgatgatga 1549
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1486 GAAAGGAAAAAAAAAAAATGGTGGATGAGACATCATTGTTCATGAGGATGATGATGATGA 1545
Query 1550 tgatagtgatgaAGAAGACTATGTGGGAGCTTTGGATTGAGACTTTTCTATATATAATAT 1609
| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1546 T-A--GTGATGAACAAGACTATGTGGGAGCTTTGGATTGAGACTTTTCTATATATAATAT 1602
Query 1610 CTGGCTGATATATTAGTGCCATTTTTTCTTACATTTCTTGTGGGGTTTTTCTTTCCTTT- 1668
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1603 CTGGCTGATATATTAGTGCCATTTTTT-T-ACATTTCTTGTGGGGTTTTTCTTTCCTTTT 1660
Query 1669 --ATCATCAATAGAATGTTATAATTTGCATTTATGATCTTTAGTAATTATCACTGTCGGG 1726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1661 CGATCATCAATAGAATGTTATAATTTGCATTTATGATCTTTAGTAATTATCACTGTCGGG 1720
Query 1727 GAT 1729
|||
Sbjct 1721 GAT 1723
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68219628795
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5