BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75540.1
Length=1282
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476701 jgi|Araly1|476701|fgenesh2_kg.2__1831__AT1G75540.1 1552 0.0
> Ahg476701 jgi|Araly1|476701|fgenesh2_kg.2__1831__AT1G75540.1
Length=1083
Score = 1552 bits (840), Expect = 0.0
Identities = 1039/1125 (92%), Gaps = 54/1125 (5%)
Strand=Plus/Plus
Query 27 CGATCGATGAAGATCAGGTGCGACGTCTGCGATAAAGAAGAAGCGTCGGTGTTTTGCACG 86
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1 CGATCGATGAAGATCAGGTGCGACGTCTGCGACAAAGAAGAAGCGTCGGTGTTTTGTACC 60
Query 87 GCCGACGAAGCATCTCTCTGCGGCGGCTGCGACCACCAAGTCCACCACGCTAACAAACTC 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCCGACGAAGCATCTCTCTGCGGCGGCTGCGACCACCAAGTCCACCACGCTAACAAACTC 120
Query 147 Gcctctaaacatctccgtttctctctcctttatccttcttcttccaacacctcctctcct 206
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 121 GCCTCTAAACATCTCCGTTTCTCTCTCCTCTATCCTTCTTCTTCCAACAACTCCTCTCCT 180
Query 207 ctctGCGACATCTGTCAGGATAAAAAAGCTCTGTTGTTCTGTCAACAAGATAGAGCTATT 266
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 181 CTCTGCGACATCTGTCAGGATAAAAAAGCCCTGTTGTTTTGTCAACAAGATAGAGCTATT 240
Query 267 TTATGCAAAGATTGCGATTCATCGATCCACGCTGCGAACGAACACACAAAGAAACACGAT 326
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 241 TTATGCAAAGATTGTGATTCATCGATCCACGCAGCGAACGAACACACAAAGAAACACGAT 300
Query 327 AGGTTTCTTCTTACAGGGGTTAAGCTCTCTGCAACATCGTCTGTTTACAAACCTACTTCG 386
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 301 AGGTTTCTTCTTACAGGGGTTAAGCTCTCTGCTACATCTTCTGTTTACAAACCTACTTC- 359
Query 387 AAAtcttcttcttcttcttcAAGCAACCAAGATTTCTCTGTCCCTGGATCATCAAtctct 446
| | | |||||||||| ||||||||||||| ||||||| ||||||||||||||||||
Sbjct 360 AGAG-T-CTTCTTCTTC---AAGCAACCAAGATCTCTCTGTTCCTGGATCATCAATCTCT 414
Query 447 aatcctcctcctctcaagaaacctctctcagctcctcctcAGAGCAACAA---------G 497
|||| | |||||||||||||||| |||||| |||||||||||||||||| |
Sbjct 415 AATC-T--TCCTCTCAAGAAACCTTTCTCAGTTCCTCCTCAGAGCAACAACAACTCCAAG 471
Query 498 ATCCAACCCTTTTCGAAGATCAACGGCGGTGATGCGTCGGTGAATCAGTGGGGATCCACA 557
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 472 ATCCAACCCTTTTCGAAGATCAGCGGCGGTGATGCGGCGGTGAATCAGTGGGGATCCACA 531
Query 558 AGCACGATTTCTGAGTATTTGATGGATACGTTACCTGGTTGGCACGTTGAGGATTTCCTC 617
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 532 AGCACGATTTCAGAGTATTTGATCGATACGTTACCTGGTTGGCACGTTGAGGATTTCCTC 591
Query 618 GATTCCTCTCTTCCTACTTATGGTTTCTCTAAGAGTGGTGATGATGATGGAGTGTTACCA 677
||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||
Sbjct 592 GATTCCTCTCTTCCTACTTTTGGTTTCACCAAGAGTGGTGATGATGATGGAGTGTTACCA 651
Query 678 TATATGGAACCAGAAGATGacaacaacactaagagaaacaacaacaacaacaacaacaac 737
||||||||| ||||||||||||||| | ||||||||||||||||||||||||
Sbjct 652 TATATGGAAGCAGAAGATGACAACA-C--TAAGAGAAACAACAACAACAACAA------- 701
Query 738 aacaacaaTACAGTGTCACTTCCATCTAAGAATTTAGGGATTTGGGTCCCTCAGATTCCA 797
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 --------TACAGTGTCACTTCCATCTAAGAATTTAGGGATTTGGGTCCCTCAGATTCCA 753
Query 798 CAAACTCTTCCTTCTTCATACCCAAATCAATACTTTTCTCAAGACAACAACA-TACA--G 854
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 754 CAAACTCTTCCTTCTTCATACCCAAATCAATACTTTTCTCAAGACAACAACAATACACAG 813
Query 855 TTTGGGATGTACAACAAAGAAACATCACCAGAAGTAGTGTCTTTTGCTCCAATACAAAAC 914
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 814 TTTGGGATGTACAACAAAGAAACATCACCAGAAGTAGTGTCTTTTGCTCCATTACAAAAC 873
Query 915 ATGAAACAACAAGGACAGAACAACAAGAGATGGTATGATGATGGTGGCTTCACTGTCCCA 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 874 ATGAAACAACAAGGACAGAACAACAAGAGATGGTATGATGATGGTGGCTTCACTGTCCCA 933
Query 975 CAGATCACTCCTCCTCCTCTTTCTTCTAATAAAAAGTTTAGATCTTTCTGGTAATTTTAC 1034
||||| |||||||||| | || ||||||||||||||||||||||||||||||||||| ||
Sbjct 934 CAGATTACTCCTCCTC-T-TT-CTTCTAATAAAAAGTTTAGATCTTTCTGGTAATTT-AC 989
Query 1035 TATCTCCCTAAATGGGGGAGttttttttttGTTTGTTTGTTTCTCCTTCATTTCTCCCAA 1094
||||||||||||||||| |||| |||||||||||||||| ||||||| |||
Sbjct 990 TATCTCCCTAAATGGGGC--TTTT------GTTTGTTTGTTTCTCC---ATTTCTCTCAA 1038
Query 1095 CTTTGATCTCAATAGAATTAGGCTCTCTCtttttttGTGTTCTGT 1139
||| ||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1039 CTTCGATCTTAATAGAATTAGGCTCTCTCTATTTTTGTGTTCTGT 1083
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47920506669
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5