BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G75690.1 Length=743 Score E Sequences producing significant alignments: (Bits) Value Ahg339747 jgi|Araly1|339747|fgenesh1_pg.C_scaffold_2001846 632 0.0 > Ahg339747 jgi|Araly1|339747|fgenesh1_pg.C_scaffold_2001846 Length=453 Score = 632 bits (342), Expect = 0.0 Identities = 429/468 (92%), Gaps = 18/468 (4%) Strand=Plus/Plus Query 116 ATGCCAGTTTCAGCTCCATCTCCGCCTCG---TCTTCATTCTCCGTTCATTCACTGTCCC 172 ||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||| Sbjct 1 ATGCCAGTTTCAGCTCCATCTCCGCCTCGTCTTCTTCAATCTCCGTTCATTCACCGTCCA 60 Query 173 ATCAATTTCACTCCTTCTTCTTTCTCGGCGAGGAATCTCCGGTCGCCGTCAACATCTTAT 232 |||||||||||||| ||||| || || | || || || | | | | || |||||| Sbjct 61 ATCAATTTCACTCCGTCTTC-TT-TC--C--GG--TCGCC-G--G-C-T--ACCTCTTAT 105 Query 233 CCCCGAATCAAAGCTGAACTCGATCCCAACACGGTAGTCGCGATATCTGTAGGCGTAGCA 292 ||||||||||||||||||||||||||||||||||||||||| ||||| || || |||||| Sbjct 106 CCCCGAATCAAAGCTGAACTCGATCCCAACACGGTAGTCGCAATATCAGTTGGTGTAGCA 165 Query 293 AGCGTCGCATTAGGAATCGGAATCCCTGTGTTCTACGAGACTCAAATCGACAATGCGGCT 352 ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||| Sbjct 166 AGCGTCGCATTAGGAATCGGAATCCCTGTGTTCTACGAGACACAAATCGAAAATGCCGCT 225 Query 353 AAGCGAGAGAATACTCAACCTTGTTTTCCCTGTAATGGCACCGGAGCTCAGAAATGCAGA 412 ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 226 AAGCGAGAGAATACTCAACCTTGTTTTCCCTGTAACGGTACCGGAGCTCAGAAATGCAGA 285 Query 413 TTGTGTGTGGGAAGTGGTAATGTGACCGTAGAGCTTGGTGGAGGAGAGAAAGAAGTCTCA 472 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || Sbjct 286 TTGTGTGTGGGAAGTGGTAATGTGACCGTAGAGCTTGGTGGAGGAGAGAAACAAGTATCC 345 Query 473 AACTGTATCAACTGTGATGGTGCTGGTTCCTTAACTTGCACTACTTGTCAAGGCTCTGGT 532 ||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 346 AACTGCATTAACTGTGATGGTGCTGGTTCCTTGACTTGCACTACTTGTCAAGGCTCTGGT 405 Query 533 GTTCAACCTCGATACCTTGATCGAAGGGAGTTCAAGGACGATGACTAA 580 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 406 GTTCAACCTCGATACCTTGATCGAAGGGAGTTCAAGGACGATGACTAA 453 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27372254406 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5