BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G75750.1 Length=667 Score E Sequences producing significant alignments: (Bits) Value Ahg926960 jgi|Araly1|926960|scaffold_202521.1 512 1e-144 > Ahg926960 jgi|Araly1|926960|scaffold_202521.1 Length=341 Score = 512 bits (277), Expect = 1e-144 Identities = 320/340 (94%), Gaps = 6/340 (2%) Strand=Plus/Plus Query 68 CTCTCCTTGGAGAATCATGGCTATTTCAAAAGCTCTTATCGCTTCTCTTCTCATATCTCT 127 ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| Sbjct 5 CTCTCCTTGGAGAATTATGGCTATTTCAAAAGCTCTTATTGCTTCTCTTCTCATATCTCT 64 Query 128 TCTTGTTCTCCAACTCGTCCAGGCTGATG---TCGAAAACTCACAGAAGAAAAATGGTTA 184 ||||||||| |||||||||||||| |||| |||||||||| ||||||||||| ||||| Sbjct 65 TCTTGTTCTTCAACTCGTCCAGGCCGATGTCTTCGAAAACTCTCAGAAGAAAAAAGGTTA 124 Query 185 CGCAAAGAAGATCGATTGTGGGAGTGCGTGTGTAGCACGGTGCAGGCTTTCGAGGAGGCC 244 ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 125 CGCAAAGAAGATCGATTGTGGGAGTGCTTGTGTAGCACGGTGCAGGCTCTCGAGGAGGCC 184 Query 245 GAGGCTGTGTCACAGAGCGTGCGGGACTTGCTGCTACAGGTGCAACTGTGTGCCTCCGGG 304 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 185 GAGGCTGTGTCACAGAGCGTGCGGGACTTGCTGCTACAGGTGCAACTGTGTGCCTCCGGG 244 Query 305 TACGTACGGAAACTACGACAAGTGCCAGTGCTACGCTAGCCTCACCACCCACGGTGGACG 364 || ||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 245 CACATACGGTAACTACGACACGTGCCAGTGCTACGCTACCCTCACCACCCACGGTGGACG 304 Query 365 CCGCAAGTGCCCATAAGAAGAAACAAAGCTCTTAATTGCT 404 ||||||||||||||||||| | ||||||||||||| ||| Sbjct 305 CCGCAAGTGCCCATAAGAA-A--CAAAGCTCTTAATAGCT 341 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24474912714 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5