BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G75810.1 Length=703 Score E Sequences producing significant alignments: (Bits) Value Ahg476728 jgi|Araly1|476728|fgenesh2_kg.2__1858__AT1G75810.1 649 0.0 > Ahg476728 jgi|Araly1|476728|fgenesh2_kg.2__1858__AT1G75810.1 Length=546 Score = 649 bits (351), Expect = 0.0 Identities = 377/390 (97%), Gaps = 0/390 (0%) Strand=Plus/Plus Query 84 ATGTGTCTCATGGCGTTATCCGACGCGGTTCTCGGGAATCTCGCGACGATCTACGTGGCG 143 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27 ATGTGTCTCATGGCGTTATCCGACGCGGTTCTCGGGAATCTCGCGACGATCTACGTGGCG 86 Query 144 GTGATTATCGCGATTAAAGCCTACGGATTAATCACCGGGAGGAGTTTCAGCGCTGGATTC 203 ||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||| Sbjct 87 GTGATTATCGCGATTAAGGCCTACGGATTAATCACCGGGAGGAGTTTCAGTGCAGGATTC 146 Query 204 GTCGTCGTCGTTTCGATTACGGCAGTTGGTGTTTTGCTTGCAGTTACGCTTGCTTGGGAT 263 ||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||| Sbjct 147 GTCGTCGTCGTTTCGATTACGGCGGTCGGTGTTTTGCTTGCGGTTACGCTTGCTTGGGAT 206 Query 264 GTGTCTCGTAGAGCAGCGGAGGCGGTTTCTCGGTACAATCGTGTTGGTGGTGAGGAAGAT 323 |||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| ||| Sbjct 207 GTGTCTCGTAGAGCAGCGGATGCGGTTTCGCGGTACAATCGCGTTGGTGGTGAGGAGGAT 266 Query 324 CTTAGCCACCACCGTCACCATCACGACGGTGGTGCGATTTGTAAAGGAGGGATTTGCTGG 383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 267 CTTAGCCACCACCGTCACCATCACGACGGTGGTGCGATTTGTAAAGGAGGGATTTGCTGG 326 Query 384 CACGGCGTTGCGGTTCGGTCTCCGGCTTCACAGGTTCGATTTAGGCTTCCACAACATATA 443 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 327 CACGGCGTTGCGGTTCGGTCACCGGCTTCACAGGTTCGATTTAGGCTTCCACAACATATA 386 Query 444 CCTTACGGTGCTTTCTGAGTATATAAACTT 473 || ||||||||||||||||||||||| ||| Sbjct 387 CCCTACGGTGCTTTCTGAGTATATAATCTT 416 Score = 158 bits (85), Expect = 7e-38 Identities = 100/107 (93%), Gaps = 2/107 (2%) Strand=Plus/Plus Query 560 ATGATGATGAGGAATAAGGTAATGGTGTTCTTCTTCTTGTAAGTTGGAAGGTTTTTGTTT 619 ||| ||||||||||||||||||||||||||||||||||||||||||||| |||| | || Sbjct 442 ATGTTGATGAGGAATAAGGTAATGGTGTTCTTCTTCTTGTAAGTTGGAAAGTTTCT-TT- 499 Query 620 GTATTGATATGTTGTAAAATCGGATAGTGATTGTGATGATTATAGAT 666 ||||||||||||||||||||| |||||||||| |||||||||||||| Sbjct 500 GTATTGATATGTTGTAAAATCTGATAGTGATTATGATGATTATAGAT 546 Score = 54.7 bits (29), Expect = 9e-07 Identities = 29/29 (100%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 491 TTTTGACTTTTGTGAAGTAGATAACATGT 519 ||||||||||||||||||||||||||||| Sbjct 417 TTTTGACTTTTGTGAAGTAGATAACATGT 445 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25847337726 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5