BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G75810.1

Length=703
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg476728 jgi|Araly1|476728|fgenesh2_kg.2__1858__AT1G75810.1         649    0.0  


> Ahg476728 jgi|Araly1|476728|fgenesh2_kg.2__1858__AT1G75810.1
Length=546

 Score =  649 bits (351),  Expect = 0.0
 Identities = 377/390 (97%), Gaps = 0/390 (0%)
 Strand=Plus/Plus

Query  84   ATGTGTCTCATGGCGTTATCCGACGCGGTTCTCGGGAATCTCGCGACGATCTACGTGGCG  143
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  27   ATGTGTCTCATGGCGTTATCCGACGCGGTTCTCGGGAATCTCGCGACGATCTACGTGGCG  86

Query  144  GTGATTATCGCGATTAAAGCCTACGGATTAATCACCGGGAGGAGTTTCAGCGCTGGATTC  203
            ||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct  87   GTGATTATCGCGATTAAGGCCTACGGATTAATCACCGGGAGGAGTTTCAGTGCAGGATTC  146

Query  204  GTCGTCGTCGTTTCGATTACGGCAGTTGGTGTTTTGCTTGCAGTTACGCTTGCTTGGGAT  263
            ||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct  147  GTCGTCGTCGTTTCGATTACGGCGGTCGGTGTTTTGCTTGCGGTTACGCTTGCTTGGGAT  206

Query  264  GTGTCTCGTAGAGCAGCGGAGGCGGTTTCTCGGTACAATCGTGTTGGTGGTGAGGAAGAT  323
            |||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| |||
Sbjct  207  GTGTCTCGTAGAGCAGCGGATGCGGTTTCGCGGTACAATCGCGTTGGTGGTGAGGAGGAT  266

Query  324  CTTAGCCACCACCGTCACCATCACGACGGTGGTGCGATTTGTAAAGGAGGGATTTGCTGG  383
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  267  CTTAGCCACCACCGTCACCATCACGACGGTGGTGCGATTTGTAAAGGAGGGATTTGCTGG  326

Query  384  CACGGCGTTGCGGTTCGGTCTCCGGCTTCACAGGTTCGATTTAGGCTTCCACAACATATA  443
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  327  CACGGCGTTGCGGTTCGGTCACCGGCTTCACAGGTTCGATTTAGGCTTCCACAACATATA  386

Query  444  CCTTACGGTGCTTTCTGAGTATATAAACTT  473
            || ||||||||||||||||||||||| |||
Sbjct  387  CCCTACGGTGCTTTCTGAGTATATAATCTT  416


 Score =  158 bits (85),  Expect = 7e-38
 Identities = 100/107 (93%), Gaps = 2/107 (2%)
 Strand=Plus/Plus

Query  560  ATGATGATGAGGAATAAGGTAATGGTGTTCTTCTTCTTGTAAGTTGGAAGGTTTTTGTTT  619
            ||| ||||||||||||||||||||||||||||||||||||||||||||| |||| | || 
Sbjct  442  ATGTTGATGAGGAATAAGGTAATGGTGTTCTTCTTCTTGTAAGTTGGAAAGTTTCT-TT-  499

Query  620  GTATTGATATGTTGTAAAATCGGATAGTGATTGTGATGATTATAGAT  666
            ||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct  500  GTATTGATATGTTGTAAAATCTGATAGTGATTATGATGATTATAGAT  546


 Score = 54.7 bits (29),  Expect = 9e-07
 Identities = 29/29 (100%), Gaps = 0/29 (0%)
 Strand=Plus/Plus

Query  491  TTTTGACTTTTGTGAAGTAGATAACATGT  519
            |||||||||||||||||||||||||||||
Sbjct  417  TTTTGACTTTTGTGAAGTAGATAACATGT  445



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25847337726


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5