BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G75820.1 Length=3431 Score E Sequences producing significant alignments: (Bits) Value Ahg476729 jgi|Araly1|476729|fgenesh2_kg.2__1859__AT1G75820.1 5038 0.0 Ahg347425 jgi|Araly1|347425|fgenesh1_pg.C_scaffold_5000817 346 7e-94 Ahg344577 jgi|Araly1|344577|fgenesh1_pg.C_scaffold_4000919 346 7e-94 Ahg938283 jgi|Araly1|938283|scaffold_502474.1 335 1e-90 > Ahg476729 jgi|Araly1|476729|fgenesh2_kg.2__1859__AT1G75820.1 Length=3398 Score = 5038 bits (2728), Expect = 0.0 Identities = 3180/3394 (94%), Gaps = 47/3394 (1%) Strand=Plus/Plus Query 15 TTCACAAATGATAAATCTACTTAAGACAGTAACCATAACAAGATTTACAAGATAATTTGA 74 |||||||||||||||||||||| ||||| |||||| | ||| ||||||||||||| || Sbjct 1 TTCACAAATGATAAATCTACTT-AGACAATAACCACACCAAAATTTACAAGATAA-TT-- 56 Query 75 AAAATGAACACATAAAAGTATTTTGGCGCATTAT-TTTTAATAATAACAATATTTATGTA 133 || | |||| |||||||||||||||| |||| ||||||||||||| |||||| Sbjct 57 ----TG-----A-AAAA-TATTTTGGCGCATTATATTTTTATAATAACAATATATATGTA 105 Query 134 AAGTCACATAAAAGTATATATTCGCTCACAAAGTCTTACGGTATTTAGAACAGTAGTACC 193 ||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||| Sbjct 106 AAGTCACATAAAAGTATTTATTCTCTCACAAAGTCTTACGGTATTTAGAAC---AGTACC 162 Query 194 ACATCGATTCTCTTCATCTTCTTCTTCATAATATGCCATTGTTCATGTCTCTGTGTCCTA 253 | ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| Sbjct 163 AAATCGATTCTCTTCATCTTCCTCTTCATAATATGCCATTGTTGATGTCTCTGTGTCCTA 222 Query 254 TCGCATAACACTCACGCTATCTTATTATTTTCTCTCGCTCTTTCTCACTGAGAGGACA-C 312 ||||||||||||||||||| ||||||||| ||| || ||||||||| |||| |||||| | Sbjct 223 TCGCATAACACTCACGCTAACTTATTATTCTCTATCTCTCTTTCTCTCTGAAAGGACATC 282 Query 313 -T---aaaaaaaTGGCGATGAGACTTTTGAAGACTCATCTTCTGTTTCTGCATCTGTATC 368 | |||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 283 TTAAAAAAAAAATGGCGTTGAGACTTTTGAAGACTCATCTTCTGTTTCTGCATCTGTATC 342 Query 369 TATTTTTCTCACCATGTTTCGCTTACACTGACATGGAAGTTCTTCTCAATCTCAAATCCT 428 ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| Sbjct 343 TATTTTTCTCACCATGTTTCGCTAACACTGACATGGAAGTTCTCCTCAATCTCAAATCCT 402 Query 429 CCATGATTGGTCCTAAAGGACA-CGGTCTCCACGACTGGATTCAC-TCATCTTCTCCGGA 486 |||||||||||||||| || || |||||||||||||||||||| | || || ||||||| Sbjct 403 CCATGATTGGTCCTAACGG-CACCGGTCTCCACGACTGGATTC-CTTCCTCATCTCCGGC 460 Query 487 TGCTCACTGTTCTTTCTCCGGCGTCTCATGTGACGACGATGCTCGTGTTATCTCTCTCAA 546 |||||||||||||||||||| || |||||||||| |||||||||||||||||||||||| Sbjct 461 GGCTCACTGTTCTTTCTCCGGTGTTTCATGTGACGGCGATGCTCGTGTTATCTCTCTCAA 520 Query 547 CGTCTCCTTCACTCCTTTGTTTGGTACAATCTCACCAGAGATTGGGATGTTGACTCATTT 606 |||||| || ||||||||||||||||| |||||||| |||||||||||||||| || ||| Sbjct 521 CGTCTCGTTTACTCCTTTGTTTGGTACTATCTCACCGGAGATTGGGATGTTGAATCGTTT 580 Query 607 GGTGAATCTAACTTTAGCTGCCAACAACTTCACCGGTGAATTACCATTGGAGATGAAGAG 666 |||||||||||||||||||||||| || ||| |||||| ||||||||||||||||||||| Sbjct 581 GGTGAATCTAACTTTAGCTGCCAATAATTTCTCCGGTGCATTACCATTGGAGATGAAGAG 640 Query 667 TCTAACTTCTCTCAAGGTTTTGAATATCTCCAACAATGGTAACCTTACTGGAA-CATTCC 725 ||||||||||||||||||||||||||||||||||||||| ||||||| ||||| | |||| Sbjct 641 TCTAACTTCTCTCAAGGTTTTGAATATCTCCAACAATGGAAACCTTAATGGAAGC-TTCC 699 Query 726 CTGGAGAGATT-TTAAAAGCTATGGTTGATCTTGAAGTTCTTGACACTTATAACAACAAT 784 ||||||||||| || |||||||||||||||||||||||||||||| ||||||||||| | Sbjct 700 CTGGAGAGATTGTT-AAAGCTATGGTTGATCTTGAAGTTCTTGACGCTTATAACAACGGT 758 Query 785 TTCAACGGTAAGTTACCACCGGAGATGT-CAGAGCTTAAGAAGCTTAAATACCTCTCTTT 843 |||| ||||| ||||||||||||||| | ||||||| ||||| || ||| ||||||| | Sbjct 759 TTCACCGGTACGTTACCACCGGAGAT-TCCAGAGCTGAAGAAACTCAAACACCTCTCCCT 817 Query 844 CGGTGGAAATTTCTTCAGCGGAGAGATTCCAGAGAGTTATGGAGATATTCAAAGCTTAGA 903 |||||| |||||||||| ||||||||||||||||||||| |||||||| ||||||||||| Sbjct 818 CGGTGGGAATTTCTTCAACGGAGAGATTCCAGAGAGTTACGGAGATATCCAAAGCTTAGA 877 Query 904 GTATCTTGGTCTCAACGGAGCTGGACTCTCCGGTAAATCTCCGGCGTTTCTTTCCCGCCT 963 |||||||||||||||||| |||||| ||||||||||||||||||||||||| || || || Sbjct 878 GTATCTTGGTCTCAACGGCGCTGGAATCTCCGGTAAATCTCCGGCGTTTCTATCTCGACT 937 Query 964 CAAGAA-CTTAAGAGAAATGTATATTGGCTACTACAACAGCTACACCGGTGGTGTTCCAC 1022 |||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 938 CAAGAACCTAAAG-GAAATGTATATTGGCTACTACAACAGCTACACCGGTGGTGTTCCAC 996 Query 1023 CGGAGTTCGGTGGTTTAACAAAGCTTGAGATCCTCGACATGGCGAGCTGTACACTCACCG 1082 |||||||||| |||||||||||||||||||| |||||||||||||| ||||| ||||||| Sbjct 997 CGGAGTTCGGCGGTTTAACAAAGCTTGAGATACTCGACATGGCGAGTTGTACTCTCACCG 1056 Query 1083 GAGAGATTCCGACGAGTTTAAGTAACCTGAAACATCTACATACTCTGTTTCTTCACATCA 1142 | ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| Sbjct 1057 GCGAGATTCCGACGAGTTTAAGTAACCTGAAACATTTACATACTCTGTTTCTTCATGTCA 1116 Query 1143 ACAACTTAACCGGTCATATACCACCGGAGCTTTCCGGTTTAGTCAGCTTGAAATCTCTCG 1202 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1117 ACAACTTAACCGGTCATATACCACCGGAGCTTTCCGGTTTAGTCAGCTTGAAATCTCTCG 1176 Query 1203 ATTTATCAATCAATCAGTTAACCGGAGAAATCCCTCAAAGCTTCATCAATCTCGGAAACA 1262 ||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||| Sbjct 1177 ATTTATCAATCAACCAGTTAACCGGAGAAATTCCTCAAAGCTTCATCGATCTCGGAAACA 1236 Query 1263 TTACTCTAATCAATCTCTTCAGAAACAATCTCTACGGACAAATACCAGA-GGCCATCGGA 1321 | |||||||||||||||||| | |||||||||||||||||||||||||| | ||||||| Sbjct 1237 TCACTCTAATCAATCTCTTCCGGAACAATCTCTACGGACAAATACCAGACTG-CATCGGA 1295 Query 1322 GAATTACCAAAACTCGAAGTCTTCGAAGTATGGGAGAACAATTTCACGTTACAATTACCG 1381 ||||||||||| ||| ||||||| ||||| ||||||||||| ||||||||||| |||||| Sbjct 1296 GAATTACCAAAGCTCCAAGTCTTTGAAGTGTGGGAGAACAACTTCACGTTACAGTTACCG 1355 Query 1382 GCGAATCTTGGCCGGAACGGGAATCTAATAAAGCTTGATGTCTCTGATAATCATCTCACC 1441 |||||||||||||||||||||||||| || ||||| || || ||| |||||||||||||| Sbjct 1356 GCGAATCTTGGCCGGAACGGGAATCTGATGAAGCTGGACGTATCTTATAATCATCTCACC 1415 Query 1442 GGACTTATCCCCAAGGACTTATGCAGAGGTGAGAAATTAGAGATGTTAATTCTCTCTAAC 1501 ||||||||||||| ||| || ||||||||||||||||| |||||||| ||||||||||| Sbjct 1416 GGACTTATCCCCATGGATTTGTGCAGAGGTGAGAAATTGGAGATGTTGATTCTCTCTAAT 1475 Query 1502 AACTTCTTCTTTGGTCCAATTCCAGAAGAGCTTGGTAAATGCAAAT-CCTTAACCAAAAT 1560 ||||||||||||||||| |||||||||||||||||||||||||| | ||| || |||||| Sbjct 1476 AACTTCTTCTTTGGTCCGATTCCAGAAGAGCTTGGTAAATGCAAGTCCCTGAA-CAAAAT 1534 Query 1561 CAGAATCGTTAAGAATCTTCTCAACGGCACTGTTCCGGCGGGGCTTTTCAATCTACCGTT 1620 ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| Sbjct 1535 CAGAATCGTTAAGAATCTTCTCAACGGAACTATTCCGGCGGGGCTTTTCAATCTACCGTT 1594 Query 1621 AGTTACGATTATCGAACTCACTGATAATTTCTTCTCCGGTGAACTTCCGGTAACGATGTC 1680 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1595 AGTTACGATTATCGAACTCACTGATAATTTCTTCTCCGGTGAACTTCCGGCAACGATGTC 1654 Query 1681 CGGCGATGTTCTCGATCAGATTTACCTCTCTAACAACTGGTTTTCCGGCGAGATTCCACC 1740 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1655 CGGCGATGTTCTCGATCAGATTTACCTCTCAAACAACTGGTTTTCCGGCGAGATTCCACC 1714 Query 1741 TGCGATTGGTAATTTCCCCAATCTACAGACTCTATTCTTAGATCGGAACCGATTTCGCGG 1800 ||| || ||||||||||||||| |||||||||| |||||||||||||||||||||||||| Sbjct 1715 TGCAATCGGTAATTTCCCCAATTTACAGACTCTGTTCTTAGATCGGAACCGATTTCGCGG 1774 Query 1801 CAACATT-CCGAGAGAAATCTTCGAATTGAAGCATTTATCGAGGATCAACACAAGTGCGA 1859 || || |||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1775 GAA-TTTACCGAGAGAAATCTTCGAATTGAAGCATTTATCGAAGATCAACACAAGTGCGA 1833 Query 1860 ACAACATCACCGGCGGTATTCCAGATTCAATCTCTCGCTGCTCAACTTTAATCTCCGTCG 1919 ||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||| Sbjct 1834 ACAACATCACCGGCGCTATTCCAGATTCAATCTCTCGCTGCACTACTTTAATCTCCGTCG 1893 Query 1920 ATCTCAGCCGTAACCGAATCAACGGAGAAATCCCTAAAGGGATCAACAACGTGAAAAACT 1979 ||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||| Sbjct 1894 ATCTCAGCCGTAACCGAATCACCGGAGAAATCCCTAAAGATATCAACAACGTGATTAACC 1953 Query 1980 TAGGAACTCTAAATATCTCCGGTAATCAATTAACCGGTTCAATCCCTACCGGAATCGGAA 2039 |||||||||| ||| ||||||| |||||| | |||||||||||||||||| ||||||||| Sbjct 1954 TAGGAACTCTGAATCTCTCCGGCAATCAACTCACCGGTTCAATCCCTACCAGAATCGGAA 2013 Query 2040 ACATGACGAGTTTAACAACTCTCGATCTCTCTTTCAACGATCTCTCCGGTAGAGTACCAC 2099 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 2014 ACATGACGAGTTTAACAACTCTCGATCTCTCTTTCAACGATCTCTCCGGAAGAGTACCAC 2073 Query 2100 TCGGTGGTCAATTCTTGGTGTTCAACGAAACTTCCTTCGCCGGAAACACTTACCTCTGTC 2159 |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 2074 TCGGTGGTCAATTCATGGTGTTCAACGAAACTTCCTTCGCTGGAAACACTTACCTCTGTC 2133 Query 2160 TCCCTCACCGTGTCTCTTGTCCAACACGGCCAGGACAAACCTCCGATCACAATCACACGG 2219 |||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 2134 TCCCTCACCGCGTCTCATGTCCAACACGGCCAGGACAAACCTCCGATCACAACCACACGG 2193 Query 2220 CGTTGTTCTCACCGTCAAGGATCGTAATCACGGTTATCGCAGCGATCACCGGTTTGATCC 2279 |||| ||||||||||| |||||||||||||||||||||||||||||||| | ||||||| Sbjct 2194 CGTTATTCTCACCGTCGAGGATCGTAATCACGGTTATCGCAGCGATCACAGCTTTGATCT 2253 Query 2280 TAATCAGTGTAGCGATTCGTCAGATGAATAAGAAGAAGAACCAGAAATCTCTCGCCTGGA 2339 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 2254 TAATCAGTGTAGCGATTCGTCAGATGAAGAAGAAGAAGAACCAGAAATCTCTCGCCTGGA 2313 Query 2340 AACTAACCGCCTTCCAGAAACTAGATTTCAAATCTGAAGACGTTCTCGAGTGTCTTAAAG 2399 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 2314 AACTAACCGCCTTCCAGAAACTAGATTTCAAATCCGAAGACGTTCTCGAGTGTCTTAAAG 2373 Query 2400 AAGAGAACATAATCGGTAAAGGCGGAGCTGGAATTGTCTACCGTGGATCAATGCCAAACA 2459 |||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||| Sbjct 2374 AAGAGAACATAATCGGCAAAGGCGGAGCTGGAATCGTCTACCGTGGATCCATGCCAAACA 2433 Query 2460 ACGTAGACGTCGCGATTAAACGACTCGTTGGCCGTGGGACCGGGAGGAGCGATCATGGAT 2519 |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 2434 ACGTAGACGTCGCGATCAAACGACTCGTTGGCCGTGGAACCGGGAGGAGCGATCATGGAT 2493 Query 2520 TCACGGCGGAGATTCAAACTTTGGGGAGAATCCGCCACCGTCACATAGTGAGACTTCTTG 2579 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2494 TCACGGCGGAGATTCAAACTTTGGGAAGAATCCGCCACCGTCACATAGTGAGACTTCTTG 2553 Query 2580 GTTACGTAGCGAACAAGGATACGAATCTCCTTCTTTATGAGTACATGCCTAATGGAAGCC 2639 |||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||| Sbjct 2554 GTTACGTAGCGAACAAGGATACGAATCTTCTTCTCTATGAGTACATGCCTAACGGAAGCC 2613 Query 2640 TTGGAGAGCTTTTGCATGGATCTAAAGGTGGTCATCTTCAATGGGAGACGAGACATAGAG 2699 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2614 TTGGAGAGCTTTTGCATGGATCTAAAGGTGGTCATCTTCAATGGGAGACGAGACATAGAG 2673 Query 2700 TAGCCGTGGAAGCTGCAAAGGGCTTGTGTTATCTTCACCATGATTGTTCACCATTGATCT 2759 ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 2674 TAGCCGTGGAAGCTGCAAAGGGCTTGTGTTATCTTCATCATGACTGTTCACCATTGATCT 2733 Query 2760 TGCATAGAGATGTTAAGTCCAATAACATTCTTTTGGACTCTGATTTTGAAGCCCATGTTG 2819 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2734 TGCATAGAGATGTTAAGTCCAATAACATTCTTTTGGACTCTGATTTTGAAGCCCATGTTG 2793 Query 2820 CTGATTTTGGGCTTGCTAAGTTCTTAGTTGATGGTGCTGCTTCTGAGTGTATGTCTTCAA 2879 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 2794 CTGATTTTGGGCTTGCTAAGTTCTTAGTGGATGGTGCTGCTTCTGAGTGTATGTCTTCTA 2853 Query 2880 TTGCTGGCTCTTATGGATACATCGCCCCAGAGTATGCATATACCTTGAAAGTGGACGAGA 2939 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2854 TTGCTGGCTCTTATGGATACATCGCCCCAGAGTATGCATATACCTTGAAAGTGGACGAGA 2913 Query 2940 AGAGTGATGTGTATAGTTTCGGAGTGGTTTTGTTGGAGTTAATAGCTGGGAAGAAACCTG 2999 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 2914 AGAGTGATGTGTATAGTTTCGGAGTGGTTTTGTTGGAGTTAATCGCTGGGAAGAAACCTG 2973 Query 3000 TTGGTGAATTTGGAGAAGGAGTGGATATAGTTAGGTGGGTGAGGAACACGGAAGAGGAGA 3059 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2974 TTGGTGAATTTGGAGAAGGAGTGGATATAGTTAGGTGGGTGAGGAACACGGAAGAGGAGA 3033 Query 3060 TAACTCAGCCATCGGATGCTGCTATTGTTGTTGCGATTGTTGACCCGAGGTTGACTGGTT 3119 |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 3034 TAACTCAGCCGTCGGATGCTGCTATTGTTGTTGCGATCGTTGACCCGAGGTTGACTGGTT 3093 Query 3120 ACCCGTTGACAAGTGTGATTCATGTGTTCAAGATCGCAATGATGTGTGTGGAGGAAGAAG 3179 ||||| |||| ||||||||||||||||||||||| || ||||||||||||||||| |||| Sbjct 3094 ACCCGCTGACCAGTGTGATTCATGTGTTCAAGATAGCGATGATGTGTGTGGAGGATGAAG 3153 Query 3180 CCGCGGCAAGGCCTACGATGAGGGAAGTTGTGCACATGCTCACTAACCCTCCTAAATCCG 3239 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 3154 CCGCGGCAAGGCCTACAATGAGGGAAGTTGTGCACATGCTCACTAACCCTCCTAAATCTG 3213 Query 3240 TGGCGAACTTGATCGCGTTCTGACCCAAGCAA--GATAAATATGAAAATAAGATGCGAAA 3297 |||| ||| |||||||||||||||| |||||| |||||| |||||||||||||| | || Sbjct 3214 TGGCTAACATGATCGCGTTCTGACCAAAGCAAAAGATAAA-ATGAAAATAAGATGTGTAA 3272 Query 3298 TGTGGTGATCATTTTTT-GGGTGTTCTTATTTATGGTTTCTAATACTTTCGGGTTTGTAT 3356 ||||||||| ||||||| ||||| |||||||||||||||| |||||||||||||| |||| Sbjct 3273 TGTGGTGATAATTTTTTTGGGTGCTCTTATTTATGGTTTCAAATACTTTCGGGTT-GTAT 3331 Query 3357 ATTTGTTGTGTTTCAATTTGTATATTACCTCTTT 3390 |||||||||||||||||||||||||||||||||| Sbjct 3332 ATTTGTTGTGTTTCAATTTGTATATTACCTCTTT 3365 > Ahg347425 jgi|Araly1|347425|fgenesh1_pg.C_scaffold_5000817 Length=1389 Score = 346 bits (187), Expect = 7e-94 Identities = 223/240 (93%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 1634 GAACTCACTGATAATTTCTTCTCCGGTGAACTTCCGGTAACGATGTCCGGCGATGTTCTC 1693 |||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||| Sbjct 261 GAACTCACTGATAATTTCTTCTCCGGTGAACTTCCGACAACGAT--CCGTCGATGTTCTC 318 Query 1694 GATCAGATTTACCTCTCTAACAACTGGTTTTCCGGCGAGATTCCACCTGCGATTGGTAAT 1753 ||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||| Sbjct 319 GATCAGATTTACCTCTCAAACAACTGGTTTTCTGGCGAGATTCCACCTGCGATCGGTAAT 378 Query 1754 TTCCCCAATCTACAGACTCTATTCTTAGATCGGAACCGATTTCGCGGCAACATT-CCGAG 1812 ||||||||| |||||||||| |||||||||||||||||||||||||| || || ||||| Sbjct 379 TTCCCCAATTTACAGACTCTGTTCTTAGATCGGAACCGATTTCGCGGGAAT-TTACCGAG 437 Query 1813 AGAAATCTTCGAATTGAAGCATTTATCGAGGATCAACACAAGTGCGAACAACATCACCGG 1872 |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| Sbjct 438 GGAAATCTTCGAATTGAAGCATTTATCGAAGATCAACACAAGTGCGAACAATATCACCGG 497 Score = 180 bits (97), Expect = 7e-44 Identities = 115/123 (93%), Gaps = 3/123 (2%) Strand=Plus/Plus Query 2006 CAAT-TAACCGGTTCAATCCCTACCGGAATCGGAAACATGACGAGTTTAACAACTCTCGA 2064 |||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 486 CAATATCACCGGTTCAATCCCTACCAGAATCGGAAACATGACGAGTTTAACAACTCTCGA 545 Query 2065 TCTCTCTTTCAACGATCTCTCCGGTAGAGTACCACTCGGTGGTCAATTCTTGGTGTTCAA 2124 |||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||| Sbjct 546 TCTCTCTTTCAAAGATCTCTCCGGAAGAGTACCACTCGGTGGTCAATTCATGGT-TTCA- 603 Query 2125 CGA 2127 ||| Sbjct 604 CGA 606 > Ahg344577 jgi|Araly1|344577|fgenesh1_pg.C_scaffold_4000919 Length=822 Score = 346 bits (187), Expect = 7e-94 Identities = 223/240 (93%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 1634 GAACTCACTGATAATTTCTTCTCCGGTGAACTTCCGGTAACGATGTCCGGCGATGTTCTC 1693 |||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||| Sbjct 261 GAACTCACTGATAATTTCTTCTCCGGTGAACTTCCGACAACGAT--CCGTCGATGTTCTC 318 Query 1694 GATCAGATTTACCTCTCTAACAACTGGTTTTCCGGCGAGATTCCACCTGCGATTGGTAAT 1753 ||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||| Sbjct 319 GATCAGATTTACCTCTCAAACAACTGGTTTTCTGGCGAGATTCCACCTGCGATCGGTAAT 378 Query 1754 TTCCCCAATCTACAGACTCTATTCTTAGATCGGAACCGATTTCGCGGCAACATT-CCGAG 1812 ||||||||| |||||||||| |||||||||||||||||||||||||| || || ||||| Sbjct 379 TTCCCCAATTTACAGACTCTGTTCTTAGATCGGAACCGATTTCGCGGGAAT-TTACCGAG 437 Query 1813 AGAAATCTTCGAATTGAAGCATTTATCGAGGATCAACACAAGTGCGAACAACATCACCGG 1872 |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| Sbjct 438 GGAAATCTTCGAATTGAAGCATTTATCGAAGATCAACACAAGTGCGAACAATATCACCGG 497 Score = 180 bits (97), Expect = 7e-44 Identities = 115/123 (93%), Gaps = 3/123 (2%) Strand=Plus/Plus Query 2006 CAAT-TAACCGGTTCAATCCCTACCGGAATCGGAAACATGACGAGTTTAACAACTCTCGA 2064 |||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 486 CAATATCACCGGTTCAATCCCTACCAGAATCGGAAACATGACGAGTTTAACAACTCTCGA 545 Query 2065 TCTCTCTTTCAACGATCTCTCCGGTAGAGTACCACTCGGTGGTCAATTCTTGGTGTTCAA 2124 |||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||| Sbjct 546 TCTCTCTTTCAAAGATCTCTCCGGAAGAGTACCACTCGGTGGTCAATTCATGGT-TTCA- 603 Query 2125 CGA 2127 ||| Sbjct 604 CGA 606 > Ahg938283 jgi|Araly1|938283|scaffold_502474.1 Length=400 Score = 335 bits (181), Expect = 1e-90 Identities = 206/218 (94%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 1656 CCGGTGAACTTCCGGTAACGATGTCCGGCGATGTTCTCGATCAGATTTACCTCTCTAACA 1715 |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1 CCGGTGAACTTCCGACAACGATGTCCGGCGATGTTCTCGATCAGATTTACCTCTCAAACA 60 Query 1716 ACTGGTTTTCCGGCGAGATTCCACCTGCGATTGGTAATTTCCCCAATCTACAGACTCTAT 1775 ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| | Sbjct 61 ACTGGTTTTCCGGCGAGATTCCACCTGCGATCGGTAATTTCCCCAATTTACAGACTCTGT 120 Query 1776 TCTTAGATCGGAACCGATTTCGCGGCAACATT-CCGAGAGAAATCTTCGAATTGAAGCAT 1834 ||||||||||||||||||||||||| || || ||||| ||||||||||||||||||||| Sbjct 121 TCTTAGATCGGAACCGATTTCGCGGGAAT-TTACCGAGGGAAATCTTCGAATTGAAGCAT 179 Query 1835 TTATCGAGGATCAACACAAGTGCGAACAACATCACCGG 1872 ||||||| |||||||||||||||||||||||||||||| Sbjct 180 TTATCGAAGATCAACACAAGTGCGAACAACATCACCGG 217 Score = 174 bits (94), Expect = 3e-42 Identities = 109/116 (94%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 2012 ACCGGTTCAATCCCTACCGGAATCGGAAACATGACGAGTTTAACAACTCTCGATCTCTCT 2071 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 213 ACCGGTTCAATCCCTACCAGAATCGGAAACATGACGAGTTTAACAACTCTCTATCTCTCT 272 Query 2072 TTCAACGATCTCTCCGGTAGAGTACCACTCGGTGGTCAATTCTTGGTGTTCAACGA 2127 ||||| ||||||||||| |||||||||||||||||||||||| |||| |||| ||| Sbjct 273 TTCAAAGATCTCTCCGGAAGAGTACCACTCGGTGGTCAATTCATGGT-TTCA-CGA 326 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 129547978492 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5