BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G75830.1

Length=428
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg476731 jgi|Araly1|476731|fgenesh2_kg.2__1861__AT1G75830.1         538    1e-152
  Ahg330953 jgi|Araly1|330953|fgenesh1_pm.C_scaffold_8000296           150    7e-36 


> Ahg476731 jgi|Araly1|476731|fgenesh2_kg.2__1861__AT1G75830.1
Length=420

 Score =  538 bits (291),  Expect = 1e-152
 Identities = 383/425 (90%), Gaps = 16/425 (4%)
 Strand=Plus/Plus

Query  4    CTAAAACATATATACATCGAAAACAACTAAG--T----A--TAAACAA-TAGTCATGGCT  54
            |||||||||||| |||| |||||||||||||  |    |  |||| || |||||||||||
Sbjct  1    CTAAAACATATACACATTGAAAACAACTAAGCATAAAAAGTTAAA-AACTAGTCATGGCT  59

Query  55   AAGTCTGCTACCATCGTTACTCTTTTCTTCGCTGCTCTTGTTTTCTTTGCTGCTCTTGAA  114
            |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct  60   AAGTCTGCTACCATCGTTACCCTTTTTTTCGCTGCTCTTGTTTTCTTTGCTGCTCTTGAA  119

Query  115  GCACCGATGGTGGTGGAAGCACAGAAGTTGTGCGAGAGGCCAAGTGGGACATGGTCCGGA  174
            || || |   |||||||||||||||| || ||||||||||||||||| |||||||| |||
Sbjct  120  GCGCCAACAATGGTGGAAGCACAGAAATTATGCGAGAGGCCAAGTGGAACATGGTCAGGA  179

Query  175  GTTTGCGGAAACAGTAACGCGTGCAAGAATCAGTGCATTA-ACCTTGAGAAAGCACGACA  233
            ||||||||||||| ||| || ||||||||||||||||||| | |||||||||||||||||
Sbjct  180  GTTTGCGGAAACAATAATGCATGCAAGAATCAGTGCATTAGA-CTTGAGAAAGCACGACA  238

Query  234  TGGATCTTGCAACTATGTCTTCCCAGCTCACAAATGTATCTGCTACTTCCCATGTTAATC  293
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  239  TGGATCTTGCAACTATGTCTTCCCAGCTCACAAATGTATCTGCTACTTCCCATGTTAATC  298

Query  294  TACCAAGAGCTCTTAATGCTTAATTATAAAGTGTGTATTTCTATTAAATAAGTATGTGTC  353
            |||||| | |||||| ||||||||||||| ||||  |||| ||| |||||||||||||||
Sbjct  299  TACCAAAAACTCTTAGTGCTTAATTATAA-GTGTA-ATTT-TATAAAATAAGTATGTGTC  355

Query  354  ACTCTATGAGAGGTCTTATGACATGTACCAGATATGTT-ATGTTGCTTTGTTTTAATAAG  412
            ||||||| || ||| |||||||||||||||| |||||| ||||||||||||| |||||||
Sbjct  356  ACTCTATAAGTGGTATTATGACATGTACCAGTTATGTTTATGTTGCTTTGTTATAATAAG  415

Query  413  ATAAA  417
            |||||
Sbjct  416  ATAAA  420


> Ahg330953 jgi|Araly1|330953|fgenesh1_pm.C_scaffold_8000296
Length=216

 Score =  150 bits (81),  Expect = 7e-36
 Identities = 106/118 (90%), Gaps = 2/118 (2%)
 Strand=Plus/Plus

Query  176  TTTGCG-GAA-ACAGTAACGCGTGCAAGAATCAGTGCATTAACCTTGAGAAAGCACGACA  233
            |||||| |||  || ||| ||||||||||||||||||||||||||||||   |||  |||
Sbjct  99   TTTGCGAGAAGCCAATAATGCGTGCAAGAATCAGTGCATTAACCTTGAGGGGGCAAAACA  158

Query  234  TGGATCTTGCAACTATGTCTTCCCAGCTCACAAATGTATCTGCTACTTCCCATGTTAA  291
            ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct  159  TGGATCTTGCAACTATGTCTTCCCAGCTCACAAGTGTATCTGTTACTTCCCATGTTAA  216



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15414857956


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5