BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G75830.1 Length=428 Score E Sequences producing significant alignments: (Bits) Value Ahg476731 jgi|Araly1|476731|fgenesh2_kg.2__1861__AT1G75830.1 538 1e-152 Ahg330953 jgi|Araly1|330953|fgenesh1_pm.C_scaffold_8000296 150 7e-36 > Ahg476731 jgi|Araly1|476731|fgenesh2_kg.2__1861__AT1G75830.1 Length=420 Score = 538 bits (291), Expect = 1e-152 Identities = 383/425 (90%), Gaps = 16/425 (4%) Strand=Plus/Plus Query 4 CTAAAACATATATACATCGAAAACAACTAAG--T----A--TAAACAA-TAGTCATGGCT 54 |||||||||||| |||| ||||||||||||| | | |||| || ||||||||||| Sbjct 1 CTAAAACATATACACATTGAAAACAACTAAGCATAAAAAGTTAAA-AACTAGTCATGGCT 59 Query 55 AAGTCTGCTACCATCGTTACTCTTTTCTTCGCTGCTCTTGTTTTCTTTGCTGCTCTTGAA 114 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 60 AAGTCTGCTACCATCGTTACCCTTTTTTTCGCTGCTCTTGTTTTCTTTGCTGCTCTTGAA 119 Query 115 GCACCGATGGTGGTGGAAGCACAGAAGTTGTGCGAGAGGCCAAGTGGGACATGGTCCGGA 174 || || | |||||||||||||||| || ||||||||||||||||| |||||||| ||| Sbjct 120 GCGCCAACAATGGTGGAAGCACAGAAATTATGCGAGAGGCCAAGTGGAACATGGTCAGGA 179 Query 175 GTTTGCGGAAACAGTAACGCGTGCAAGAATCAGTGCATTA-ACCTTGAGAAAGCACGACA 233 ||||||||||||| ||| || ||||||||||||||||||| | ||||||||||||||||| Sbjct 180 GTTTGCGGAAACAATAATGCATGCAAGAATCAGTGCATTAGA-CTTGAGAAAGCACGACA 238 Query 234 TGGATCTTGCAACTATGTCTTCCCAGCTCACAAATGTATCTGCTACTTCCCATGTTAATC 293 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 TGGATCTTGCAACTATGTCTTCCCAGCTCACAAATGTATCTGCTACTTCCCATGTTAATC 298 Query 294 TACCAAGAGCTCTTAATGCTTAATTATAAAGTGTGTATTTCTATTAAATAAGTATGTGTC 353 |||||| | |||||| ||||||||||||| |||| |||| ||| ||||||||||||||| Sbjct 299 TACCAAAAACTCTTAGTGCTTAATTATAA-GTGTA-ATTT-TATAAAATAAGTATGTGTC 355 Query 354 ACTCTATGAGAGGTCTTATGACATGTACCAGATATGTT-ATGTTGCTTTGTTTTAATAAG 412 ||||||| || ||| |||||||||||||||| |||||| ||||||||||||| ||||||| Sbjct 356 ACTCTATAAGTGGTATTATGACATGTACCAGTTATGTTTATGTTGCTTTGTTATAATAAG 415 Query 413 ATAAA 417 ||||| Sbjct 416 ATAAA 420 > Ahg330953 jgi|Araly1|330953|fgenesh1_pm.C_scaffold_8000296 Length=216 Score = 150 bits (81), Expect = 7e-36 Identities = 106/118 (90%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 176 TTTGCG-GAA-ACAGTAACGCGTGCAAGAATCAGTGCATTAACCTTGAGAAAGCACGACA 233 |||||| ||| || ||| |||||||||||||||||||||||||||||| ||| ||| Sbjct 99 TTTGCGAGAAGCCAATAATGCGTGCAAGAATCAGTGCATTAACCTTGAGGGGGCAAAACA 158 Query 234 TGGATCTTGCAACTATGTCTTCCCAGCTCACAAATGTATCTGCTACTTCCCATGTTAA 291 ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 159 TGGATCTTGCAACTATGTCTTCCCAGCTCACAAGTGTATCTGTTACTTCCCATGTTAA 216 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 15414857956 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5