BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G75900.1 Length=1409 Score E Sequences producing significant alignments: (Bits) Value Ahg316515 jgi|Araly1|316515|fgenesh1_pm.C_scaffold_2001548 1605 0.0 > Ahg316515 jgi|Araly1|316515|fgenesh1_pm.C_scaffold_2001548 Length=2067 Score = 1605 bits (869), Expect = 0.0 Identities = 992/1051 (94%), Gaps = 10/1051 (1%) Strand=Plus/Plus Query 120 ATGAAAGACAATTCAAGCTGGTCTTGTTCTTGTTCTTGGTCTTCGTGGAAAATATGTTTG 179 ||||||||||||||||||| | | |||||||||||||| |||||||||||||||||| Sbjct 1 ATGAAAGACAATTCAAGCT-G----G-TCTTGTTCTTGGTCGTCGTGGAAAATATGTTTG 54 Query 180 TTGTCTGTTCTCTTTCTCACCGAGACGATCACCGCCGTGAAGCTGCCGCCAAAATTGATT 239 |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| || Sbjct 55 TTGTCTGTTCTCTTTCTCACCGAGACGATCACTGCCGTGAAGCTGCCGCCAAAGTTGGTT 114 Query 240 ATTCCGGCTG-TAATCGCTTTCGGAGACTCCATCGTCGACACAGGAATGAACAACAATGT 298 ||||||| | || ||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 115 GTTCCGGC-GCTATTCGCTTTTGGAGACTCCATCGTCGACACGGGAATGAACAACAATGT 173 Query 299 CAAAACCGTGGTTAAGTGTGATTTTCTTCCTTATGGTATCAATTTCCAAAGCGGAGTTGC 358 |||||||||||||||||||||||||| |||||| ||||| |||||||| |||||||||| Sbjct 174 CAAAACCGTGGTTAAGTGTGATTTTCATCCTTACGGTATTGATTTCCAAGGCGGAGTTGC 233 Query 359 CACGGGGAGATTCTGCGATGGACGAGTCCCTGCCGATTTGCTAGCCGAAGAACTGGGAAT 418 ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 234 CACGGGGAGGTTCTGCGACGGACGAGTCCCTGCCGATTTGCTAGCCGAAGAACTGGGAAT 293 Query 419 AAAATCAATTGTACCAGCATACCTAGATCCGAATCTAAAATCGAAAGATCTTTTAACCGG 478 |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| || Sbjct 294 AAAATCAATTGTACCAGCATACCTCGATCCGAATCTAAAATCCAAAGATCTTTTAACAGG 353 Query 479 TGTATCGTTTGCGTCCGGAGGTTCTGGTTATGATCCTATAACACCGAAACTTGTGGCAGT 538 |||||| |||||||| ||||||||||||||||||||||||||||||||| | |||||||| Sbjct 354 TGTATCATTTGCGTCAGGAGGTTCTGGTTATGATCCTATAACACCGAAAATCGTGGCAGT 413 Query 539 AATATCATTAGAAGATCAATTGAGTTATTTCGAGGAGTACATAGAGAAAGTGAAGAATAT 598 ||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||| Sbjct 414 AATATCATTAGAAGAGCAATTAACATATTTCGAGGAGTACATAGAGAAAGTGAAGAATAT 473 Query 599 AGTTGGGGAAGCAAGAAAAGACTTCATAGTAGCCAACAGCTTATTCTTATTGGTCGCAGG 658 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 474 AGTTGGGGAAGAAAGAAAAGACTTCATAGTAGCCAACAGCTTATTCTTATTGGTCGCAGG 533 Query 659 CAGCGACGACATAGCCAATACATACTATACTCTACGTGCAAGACCTGAATACGACGTCGA 718 ||||||||||||||||||||||||||| ||| | ||||||||||||||||||||| |||| Sbjct 534 CAGCGACGACATAGCCAATACATACTACACTATTCGTGCAAGACCTGAATACGACATCGA 593 Query 719 TTCATACACTACTCTTATGTCTGACTCTGCCTCAGAATTTGTGACTAAACTATATGGATA 778 ||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 594 TTCCTATACTACTCTTATGTCTGACTCTGCCTCAGAATTTGTGACTAAACTGTATGGATA 653 Query 779 TGGAGTGAGAAGAGTAGCTGTGTTTGGTGCACCACCAATTGGGTGTGTACCATCACAGAG 838 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 654 TGGAGTGAGAAGAGTAGCTGTGTTTGGTGCACCACCAATTGGGTGTGTACCATCACAGAG 713 Query 839 AACGTTAGGAGGAGGTATCT-TGAGAGATTGTGCTGATAATTACAACGAAGCAGCAAAAC 897 ||| |||||||||||||| | |||||||||||||||| | |||||||||||||||||| | Sbjct 714 AACCTTAGGAGGAGGTAT-TATGAGAGATTGTGCTGAGACTTACAACGAAGCAGCAAAGC 772 Query 898 TTTTTAATTCAAAGCTCTCCCCAAAATTGGATTCGTTGCGTAAAACCCTACCGGGCATCA 957 |||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 773 TTTTCAATTCAAAGCTCTCCCCAAAATTGGATTCGTTGCGTAAAACTCTACCGGGTATCA 832 Query 958 AACCGATCTACATTAATATCTATGATCCTCTTTTTGACATCATCCAGAATCCTGCAAATT 1017 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 833 AACCGATCTACATTAATATATATGATCCTCTTTTTGACATCATCCAGAATCCTGCTAATT 892 Query 1018 ATGGGTTTGAAGTGTCTAATAAAGGATGCTGTGGAACAGGAGCCATAGAAGTTGCTGTGT 1077 |||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 893 ATGGGTTTGAAGTGGCCAATAAAGGATGTTGTGGAACAGGAGCCATAGAAGTTGCTGTGT 952 Query 1078 TGTGCAATAAAATCACATCTTCTGTATGTCCCGACGTGTCTACTCATGTGTTTTGGGACA 1137 |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| Sbjct 953 TGTGCAATAAAATCACGTCTTCTGTATGTCCCGACGTGTCTAGTCATGTGTTTTGGGACA 1012 Query 1138 GTTATCATCCTACAGAGAAAACTTACAAAGT 1168 |||||||||||||||| |||||||||||||| Sbjct 1013 GTTATCATCCTACAGAAAAAACTTACAAAGT 1043 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52678808835 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5