BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G76010.1 Length=1636 Score E Sequences producing significant alignments: (Bits) Value Ahg476750 jgi|Araly1|476750|fgenesh2_kg.2__1880__AT1G76010.1 2145 0.0 Ahg312946 jgi|Araly1|312946|fgenesh1_pm.C_scaffold_1001726 532 2e-150 > Ahg476750 jgi|Araly1|476750|fgenesh2_kg.2__1880__AT1G76010.1 Length=1595 Score = 2145 bits (1161), Expect = 0.0 Identities = 1508/1659 (91%), Gaps = 90/1659 (5%) Strand=Plus/Plus Query 4 GCTTTGCATCAAATTCTTCTTCCCTTAGGGCGTATCAAGGAGAAGAAACAAAGCCGTACA 63 ||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||| Sbjct 1 GCTTTGCATCAAAAGCTTCTT--CTTAGGGCGTATAAAGGAGAAGAAACAAAGCCGTACA 58 Query 64 ACGAGGGCTCTTCCTGGG--C-AAC-AAAACCACCATTTTCGTTTTATCTCAATCTTCGT 119 | |||||||||||||||| | ||| |||||||||||||||||||||||| ||||||||| Sbjct 59 AAGAGGGCTCTTCCTGGGCACAAACAAAAACCACCATTTTCGTTTTATCTGAATCTTCGT 118 Query 120 CTCTTTCGAAAGATCTAACCACAACAACTCCTTAAGATGGATAAGTATCAACGAGTGGTG 179 |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 119 CTCTCTCGAAAGATCTAACCACAACTCCTCCTTAAGATGGATAAGTATCAACGAGTGGTG 178 Query 180 AAGCCGAAAGCGGATACGCCGATTGATGCGAATGAGATTCGTATCACTAGTCAAGGCAGG 239 |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 179 AAGCCGAAAGCGGATACGCCGATTGATGCGAACGAGATTCGTATCACTAGTCAGGGCAGG 238 Query 240 GCACGAAACTACATCACCTATGCGATGACTCTTCTTCAGGATAAAGGGTCAACTGAAGTT 299 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 239 GCACGAAACTACATCACCTATGCGATGACTCTTCTTCAGGAGAAAGGGTCAACTGAAGTT 298 Query 300 GTATTCAAGGCAATGGGAAGAGCTATCAACAAGACTGTGACCATTGTAGAGCTGATTAAG 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 299 GTATTCAAGGCAATGGGAAGAGCTATCAACAAGACTGTGACCATTGTAGAGCTGATTAAG 358 Query 360 AGAAGGATCCCTGATCTTCATCAGAACACATCTATTGGATCCACAGACATCACAGACACA 419 |||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 359 AGAAGGATTCCTGATCTTCATCAGAACACATCTATCGGATCCACAGACATAACAGACACA 418 Query 420 TGGGAACCAACAGAGGAAGGCCTTCTACCTTTGGAGACTACAAGGCATGTGTCAATGATA 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 TGGGAACCAACAGAGGAAGGCCTTCTACCTTTGGAGACTACAAGGCATGTGTCAATGATA 478 Query 480 ACCATTACCCTATCCAAGATTGAGCTTAATACCTCCTCTGTTGGGTACCAGTGCCCAATT 539 ||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||| Sbjct 479 ACCATTATCCTATCCAAGGTTGAGCTTAATACATCCTCTGTTGGGTACCAGTGCCCAATT 538 Query 540 CCTATTGAGTTGGTGAAGCCAATGGGCGATATTGATTATGAAGGACGAGAGGGTTCACCT 599 ||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||| Sbjct 539 CCTATTGAGATGGTGAAGCCAATGGGCGATATCAATTATGAAGGGCGAGAGGGTTCACCT 598 Query 600 GGTGGCagagggaggggaagaggaagaggaaggggaagaggaagggggcgaggtggcaga 659 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 599 GGTGGCAGAGGGAGGGGAAGAGGAAGAGGAAGGGGAAGAGGAAGGGGGCGAGGCGGCAGA 658 Query 660 ggaaATGCTTATGTGAACGTTGAGCATGAAGATGGAGGTTGGGAACGTGAGCAGTCCTAT 719 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 659 GGAAATGCTTATGTGAACGTTGAGCATGAAGATGGAGGTTGGGAACGTGACCAGTCCTAT 718 Query 720 GGTAGAGGAAGAGGACGTGGCAGAGGACGCAGCAGTCGTGGTCGTGGAAGAGGAGGATAC 779 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 719 GGTAGAGGAAGAGGACGTGGCAGAGGACGCAGCAGTCGTGGTCGGGGAAGAGGAGGATAC 778 Query 780 AATGGTCCTCCGAATGAGTATGATGCACCACAAGATGGAGGTTACGGTTACGATGCTCCT 839 ||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 779 AATGGTCCTCCAAACGAGTATGATGCACCGCAAGATGGAGGTTACGGTTACGATGCTCCT 838 Query 840 C---ATGAACACCGTGGATATGATGACCGTGGTGGTTATGATGCCCCTCCTCAGGGCCGT 896 | |||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 839 CCTCATGAACACCGTGGATATGATGACCGTGGTGGTTACGATGCCCCTCCTCAGGGCCGC 898 Query 897 GGTGGTTACGATGGTCC---TCAGGGTCGCGGTGGTTACGATGGTCCTC---AGGGTCGC 950 |||||||| |||||||| |||||| ||||| ||||| |||||||||| |||| ||| Sbjct 899 GGTGGTTATGATGGTCCCACTCAGGGCCGCGGCGGTTATGATGGTCCTCCTCAGGGCCGC 958 Query 951 CGTGGTTATGATGGTCCTCCTCAGGGCCGTGGTGGTTATGATGGTCCTTCTCAAGGCCGT 1010 | |||||||||||||||||||||||||| || ||||||||||||||| |||| ||||| Sbjct 959 GGCGGTTATGATGGTCCTCCTCAGGGCCGCGGCGGTTATGATGGTCCTCCTCAGGGCCGC 1018 Query 1011 GGTGGTTATGATGGTCCTTCTCAGGGCCGTGGTGGTTATGATGGTCCTTCTCAGGGCCGT 1070 || |||||||||||||||||||||||||| || ||||||||||||||| |||| |||||| Sbjct 1019 GGCGGTTATGATGGTCCTTCTCAGGGCCGCGGCGGTTATGATGGTCCTCCTCAAGGCCGT 1078 Query 1071 GGTGGTTATGATGGTCCTCAGGGTcgtgggcgtggacgtggacgtggaaggggaggacgt 1130 || | | ||| | || || | ||| || | ||||||||| ||| Sbjct 1079 GG-GC----G-TGG-----A----CG----CG-G-ACG----CG-G-AAGGGGAGGTCGT 1111 Query 1131 ggaagaggaggaggacgtggtggtgatggtggtTTCAACAACAGATCAGATGGACCACCA 1190 |||||||||||||| |||||||||| ||| || ||||||||||||||||||||||||||| Sbjct 1112 GGAAGAGGAGGAGGTCGTGGTGGTGGTGGAGGATTCAACAACAGATCAGATGGACCACCA 1171 Query 1191 GTCCAGGCAGCTGCTTGAGAGTGAGGTTTCTCTTACACAAACATAAAAAGAAGAAAAAAG 1250 |||||||||||||||||||||||||||||| |||||||||||||||||||| |||| | Sbjct 1172 ATCCAGGCAGCTGCTTGAGAGTGAGGTTTCTTTTACACAAACATAAAAAGAA-AAAA--G 1228 Query 1251 CCCAAGTCGTTGGATGtttttttt--CTATCTCCTTGTTCTCTCACTTTCTTTCTATGTT 1308 |||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||| Sbjct 1229 CCCAAGTCGTTGGATGTTTTTTTTTTCTATCTCCTTGTTCACTCTCTTTCTTTCTATGTT 1288 Query 1309 TGCTTCTTCTGTCCATCAAGAAGACATGTTTGCCATAAGTGTATCTCATTCCCCTTCttt 1368 |||||||||||||||||||||||||||||||| |||||||||||||| ||||| || || Sbjct 1289 TGCTTCTTCTGTCCATCAAGAAGACATGTTTGTCATAAGTGTATCTCTTTCCC-TT-TTC 1346 Query 1369 tttttttACTATCCATTGATTGACAGTGTTTTAGCTTGTGGTCTGTTTTGTTTAGAGTCG 1428 ||| | | ||||||||| ||||| || | |||| |||||||||||||||||| Sbjct 1347 TTT----A-T--CCATTGATTCACAGT-TT---G-TTGT---CTGTTTTGTTTAGAGTCG 1391 Query 1429 CTTAGG--A-A-TATATGTTCAATTTATTTTATGGTTGGTCGTCGTCTTGGGTTTTTGTT 1484 |||||| | | |||||||||||||||||| |||||||| || | || | ||| Sbjct 1392 CTTAGGGTATAATATATGTTCAATTTATTT-ATGGTTGG--GT--T-TT---T----GTT 1438 Query 1485 AGAGAAGAACTACTGAGGCATCCtcttttcttttcttttttcct--ctgttttgtagttt 1542 ||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||| Sbjct 1439 AGAGAAGAACTACTGAGGCATCCTCTTTTCTTT-CTTTTT-CCTTTCTGTTTTGTAGTTT 1496 Query 1543 tgtttAG-G-TGAGAGTGAGACACAGTTTGGACAAATTACCTCTTTTCTT-T--GGTTAT 1597 ||||||| | ||||||||||||||||||||||||||||| |||||||||| | |||||| Sbjct 1497 TGTTTAGAGGTGAGAGTGAGACACAGTTTGGACAAATTAACTCTTTTCTTCTTTGGTTAT 1556 Query 1598 CAGTTTTAATGTGATGGAACAGTTGATTCTTTTATTTCC 1636 ||||||||||||||||||||||||||||||||||||||| Sbjct 1557 CAGTTTTAATGTGATGGAACAGTTGATTCTTTTATTTCC 1595 > Ahg312946 jgi|Araly1|312946|fgenesh1_pm.C_scaffold_1001726 Length=1590 Score = 532 bits (288), Expect = 2e-150 Identities = 469/554 (85%), Gaps = 22/554 (4%) Strand=Plus/Plus Query 155 GATGGATAAGTATCA-ACGAGTGGTGAAGCCGAAAGCGGATACGCCGATTGATGCGAATG 213 ||||||||||||||| | |||||| ||||||||| |||||||||||||||| || ||||| Sbjct 636 GATGGATAAGTATCAGA-GAGTGGAGAAGCCGAAGGCGGATACGCCGATTGCTGAGAATG 694 Query 214 AGATTCGTATCACTAGTCA-AGGCAGGGCACGAAACTACATCACCTATGCGATGACTCTT 272 ||||||||||||| ||| | || |||||||||||||||||||||||||||||| ||||| Sbjct 695 AGATTCGTATCACCAGT-ATGGGTAGGGCACGAAACTACATCACCTATGCGATGGCTCTT 753 Query 273 CTTCAGGATAA-AGGGTC-AACTGAAGTTGTATTCAAGGCAATGGGAAGAGCTATCAACA 330 |||||||| || | || || ||||||| | |||||||| ||||||||||||||||||| Sbjct 754 CTTCAGGAAAACAAA-TCGAA-TGAAGTTATTTTCAAGGCTATGGGAAGAGCTATCAACA 811 Query 331 AGACTGTGACCATTGTAGAGCTGATTAAGAGAAGGATCCCTGATCTTCATCAGAACACAT 390 ||| ||||| ||| || |||||||||||||||||||| |||| ||||||||||| | ||| Sbjct 812 AGAGTGTGAACATAGTTGAGCTGATTAAGAGAAGGATTCCTGGTCTTCATCAGATCTCAT 871 Query 391 CTATTGGATCCACAGACATCACAGACACATGGGAACCAACAGAGGAAGGCCTTCTACCT- 449 ||||||||||||| | ||| ||||| || |||||||| ||||||||||||||||| || Sbjct 872 CTATTGGATCCACGGCCATAACAGATACCTGGGAACCTACAGAGGAAGGCCTTCTTCCAA 931 Query 450 TTGGAGACTACAAGGCATGTGTCAATGATAACCATTACCCTATCCAAG-ATTGAGCTT-A 507 ||| |||| |||||||||||||| ||||||||||| || || || ||| | ||| || | Sbjct 932 TTG-AGACCACAAGGCATGTGTCGATGATAACCATAACACTTTCGAAGGAG-GAG-TTGA 988 Query 508 ATACCTCCTCTGTTGGGTACCAGTGCCCAATTCCTATTGAGTTGGTGAAGCCAATGGGC- 566 | || ||||| |||||||||||||| || |||||||||||| ||||||||||| | | | Sbjct 989 ACACATCCTCGGTTGGGTACCAGTGTCCTATTCCTATTGAGATGGTGAAGCCATTCG-CT 1047 Query 567 GATATTGATTATGAAGGACGAGAGGGTTCACCTGGTGGCagagggaggggaagagg-a-a 624 || ||||||| ||||||| |||||| || ||| | |||||||| ||| |||||| | | Sbjct 1048 GAGGTTGATTACGAAGGACAAGAGGGATCTCCTAGAGGCAGAGG-AGG--AAGAGGCAGA 1104 Query 625 g-aggaaggggaagaggaagggggcgaggtggcagaggaaATGCTTATGTGAACGTTGAG 683 | |||||| |||||||||||||| |||| ||||||||||||| |||||||| | |||| Sbjct 1105 GGAGGAAGAGGAAGAGGAAGGGGAAGAGGCGGCAGAGGAAATGGATATGTGAATGCTGAG 1164 Query 684 CATGAAGATGGAGG 697 |||| |||||||| Sbjct 1165 TATGATGATGGAGG 1178 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61325294450 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5