BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G76080.1 Length=1257 Score E Sequences producing significant alignments: (Bits) Value Ahg926998 jgi|Araly1|926998|scaffold_202559.1 1447 0.0 > Ahg926998 jgi|Araly1|926998|scaffold_202559.1 Length=949 Score = 1447 bits (783), Expect = 0.0 Identities = 895/949 (94%), Gaps = 8/949 (1%) Strand=Plus/Plus Query 48 ATCCCACACACACTACCACAAACAATGGCCACCGTCGCTAACTTCTTAGCCAAACCAATC 107 |||| ||||||||| | | || |||||||||||||||||||||||||||||||||||| Sbjct 1 ATCCTACACACACT--CTC--ACGATGGCCACCGTCGCTAACTTCTTAGCCAAACCAATC 56 Query 108 TCCACCGTAGTCCCACGGCCATCCTCCGCCGTTGCTTCGACCTCCTCCTTCGTATTCTTT 167 ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 57 GCCACCGTAGTCCCACGGCCTTCCTCCGCCGTTGCTTCAACCTCCTCCTTCGTATTCTTT 116 Query 168 AACCATAAAACTAATC-CTCTGTTCCGGAGGAAAAACCTCCCGAAAAGATTATTCTCCGC 226 ||||||||||| || | |||||||||||||| ||||||||||||||||| ||||||| || Sbjct 117 AACCATAAAACCAA-CTCTCTGTTCCGGAGGGAAAACCTCCCGAAAAGACTATTCTCGGC 175 Query 227 CGTGAAAATAAAGGCTGGAGCGGCGTCTCCGGGAAAGGTGGGTACACCACCGGCGAATGA 286 |||||| | ||||| ||||||||||||||||| |||||||||||||| |||||||| || Sbjct 176 TGTGAAAGTGAAGGCCGGAGCGGCGTCTCCGGGGAAGGTGGGTACACCCCCGGCGAAAGA 235 Query 287 CGAGAAGGTACAAAAGATTCACAGCGGAGAGGAATTCGACGTA-GCGTTGAAAAATGCGA 345 ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| | Sbjct 236 CGAGAAGGTACAAAAGATTCACAGCGGAGAGGAATTCGACG-AGGCGTTGAAAAATGCAA 294 Query 346 AGAGCAAACTCGTGGTTGCAGAGTTTGCTACGAGTAAGAGTGATCAGAGTAATAAGATAT 405 |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 295 AGAGCAAACTTGTGGTTGCGGAGTTTGCTACGAGTAAGAGTGATCAGAGTAATAAGATAT 354 Query 406 ATCCGTTTATGGTGGAACTGAGCAGGACCTGTAACGACGTCGTTTTCTTGCTCGTCATGG 465 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 355 ATCCGTTTATGGTGGAACTGAGCAGGACCTGTAACGACGTCGTTTTCTTGCTCGTCATGG 414 Query 466 GTGATGAATCTGACAAGACCAGAGAACTCTGTCGGAGAGAGAAGATTGAGAAAGTTCCTC 525 ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 415 GTGATGAGTCTGACAAAACCAGAGAACTCTGTCGGAGAGAGAAGATTGAGAAAGTTCCTC 474 Query 526 ACTTTAGCTTTTATAAGAGCATGGAGAAAATACACGAGGAAGAAGGTATTGAACCGGACC 585 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 475 ACTTTAGCTTTTATAAGAGCATGGAGAAAATACACGAGGAAGAAGGTATTGAACCGGACC 534 Query 586 AGTTAATGGGAGACGTTCTATACTACGGAGACAACCACTCTGCGGTGGTGCAGCTGCACG 645 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 535 AGTTAATGGGAGACGTTCTATACTACGGAGACAACCACTCAGCGGTGGTGCAGCTGCACG 594 Query 646 GCCGACCTGACGTGGAAAAGCTGATCGACGAGAATCGCACTGGAGGCAAGCTGATCGTGC 705 | ||| |||||||||| ||||| ||||||||||||||||| |||||||||||||| |||| Sbjct 595 GTCGAGCTGACGTGGAGAAGCTAATCGACGAGAATCGCACCGGAGGCAAGCTGATTGTGC 654 Query 706 TTGACGTTGGTCTAAAACATTGTGGTCCTTGCGTTAAAGTGTATCCGACCGTGCTGAAAC 765 | || || ||||| ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 655 TCGATGTCGGTCTGAAACATTGTGGTCCTTGCGTTAAGGTGTATCCGACCGTGCTGAAAC 714 Query 766 TGTCCCGGTCAATGTCCGAGACAGTCGTATTCGCTAGAATGAACGGTGACGAGAACGATA 825 |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 715 TGTCCCGGTCAATGTCGGAGACAGTCGTATTCGCTAGAATGAATGGTGACGAGAACGATA 774 Query 826 GTTGTATGGAGTTTCTCAAGGACATGAATGTTATCGAAGTTCCAACTTTCTTGTTCATTA 885 ||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||| Sbjct 775 GTTGTATGGAGTTTCTCAAGGACATGAATGTGATTGAAGTTCCAACTTTCTTATTCATTA 834 Query 886 GAGACGGCGAGATTCGTGGCCGTTATGTTGGTTCCGGTAAAGGAGAACTCATTGGAGAGA 945 |||| || || ||| ||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 835 GAGATGGAGATATTTGTGGCCGATATGTTGGTTCCGGTAAAGGAGAACTCATCGGAGAGA 894 Query 946 TTCTTCGGTACTCAGGCGTTCGTGTCACTTATTAATTTGTATCAAAACT 994 |||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 895 TTCTTCGGTACTCAGGTGTTCGTGTCACTTATTAATTTGTATCAAAACT 943 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46967433744 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5