BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G76100.1 Length=782 Score E Sequences producing significant alignments: (Bits) Value Ahg927000 jgi|Araly1|927000|scaffold_202561.1 769 0.0 > Ahg927000 jgi|Araly1|927000|scaffold_202561.1 Length=557 Score = 769 bits (416), Expect = 0.0 Identities = 509/554 (92%), Gaps = 5/554 (1%) Strand=Plus/Plus Query 20 CCCAAAAAGTAAAGAAAATGGCCGCAATTACATCAGCTACCGTCACCATCCCTTCTTTCA 79 |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| | Sbjct 5 CCCAAAAAATAAAGAAAATGGTCGCAATTACATCAGCTACCGTCACCATCCCTTCTTTAA 64 Query 80 CCGGCCTAAAGCTCGCCGTCAGCTCAAAACCTAAGACATTATCCACCATCAGTAGATCCA 139 ||||||| ||||||||||||||||||||||||| |||||||||||||| || ||||||| Sbjct 65 CCGGCCTCAAGCTCGCCGTCAGCTCAAAACCTACGACATTATCCACCACCATTAGATCCT 124 Query 140 CTTCCGCCACCAGGGCGCCACCTAAGCTCGCTTTGAAGTCCTCTTTGAAGGATTTCGGTG 199 | ||||| |||||| || ||||||||||| || ||||||||||||||||||||||||| | Sbjct 125 CCTCCGCTACCAGGACGGCACCTAAGCTCTCTGTGAAGTCCTCTTTGAAGGATTTCGGCG 184 Query 200 TCATCGCAGTGGCAACAGCAGCTTCGATCGTTTTAGCTGGAAATGCGATGGCCATGGAGG 259 ||||||| || ||||||||||||||||| |||||||| |||||||| ||||||||||||| Sbjct 185 TCATCGCCGTTGCAACAGCAGCTTCGATTGTTTTAGCCGGAAATGCAATGGCCATGGAGG 244 Query 260 TTCTTTTAGGATCCGACGACGGTTCCCTTGCTTTCGTACCATCTGAATTCACGGTGGCTA 319 ||||| ||||||||||||| ||||| |||| ||||||||||||||||||||| ||||||| Sbjct 245 TTCTTCTAGGATCCGACGATGGTTCTCTTGTTTTCGTACCATCTGAATTCACAGTGGCTA 304 Query 320 AAGGAGAGAAGATCGTGTTCAAGAACAACGCAGGGTTCCCACATAACGTGGTGTTCGACG 379 ||||||||||||||||||||||||||||||||||||||||||| || || |||||||||| Sbjct 305 AAGGAGAGAAGATCGTGTTCAAGAACAACGCAGGGTTCCCACACAATGTTGTGTTCGACG 364 Query 380 AAGACGAGATCCCTAGTGGTGTGGACGCAAGCAAGATCTCGATGGATGAGACAGCGCTTC 439 |||||||||||||||||||||||||||| | ||||||||||||||| ||||||| ||||| Sbjct 365 AAGACGAGATCCCTAGTGGTGTGGACGCGACCAAGATCTCGATGGACGAGACAGAGCTTC 424 Query 440 TAAATGGTGCAGGG-GAGACTTACGAGGTTACTTTGACAGAGCCAGGCTCTTACGGTTTC 498 | |||||||| ||| |||| |||||||||||||||||||||||| ||||||||| ||||| Sbjct 425 TTAATGGTGC-GGGAGAGAGTTACGAGGTTACTTTGACAGAGCCTGGCTCTTACAGTTTC 483 Query 499 TATTGTGCGCCGCACCAGGGTGCTGGTATGGTTGGGAAACTCACCGTCAAGTA--AA-TT 555 |||||||||||||||||||||||||||||||| |||||||||||||||||||| || || Sbjct 484 TATTGTGCGCCGCACCAGGGTGCTGGTATGGTCGGGAAACTCACCGTCAAGTAGTAAATT 543 Query 556 GTCTAGATATTCTC 569 |||| || | |||| Sbjct 544 GTCTCGAGAATCTC 557 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28859048169 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5