BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76110.1
Length=1383
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476761 jgi|Araly1|476761|fgenesh2_kg.2__1891__AT1G76110.1 1700 0.0
> Ahg476761 jgi|Araly1|476761|fgenesh2_kg.2__1891__AT1G76110.1
Length=1216
Score = 1700 bits (920), Expect = 0.0
Identities = 1073/1146 (94%), Gaps = 13/1146 (1%)
Strand=Plus/Plus
Query 1 GAATCGTTATCTTTCTCTTCTTTCCTTaaaccaaaacccaaaaaagagagaccagacaaa 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 GAATCGTTATCTTTCTCTTCTTTCCTTAAACCAAAA-CCAAAAAAGAGAGACCAGACAAA 59
Query 61 aaaaaaaaaactccccaa-caaaaaaaaGATATCTGTCTCTACTAAAAGTCTCTCTATAG 119
|||||||| || | ||| | | || | | | | |||| ||||||| ||
Sbjct 60 AAAAAAAACAC-ACACAACCCCTCACAACA-A-------C-A-AAAAAATCTCTCTTTAA 108
Query 120 CGATGTCATCGGACAACGAATCGACACCGTCTCAAGCGACGGTAGAAATGATGGCGACTT 179
|||||||||||||||||||||||||||||||||| |||||||||||||||| || || |
Sbjct 109 CGATGTCATCGGACAACGAATCGACACCGTCTCAGGCGACGGTAGAAATGACCGCAACGT 168
Query 180 CGCCGGCGAAGATTAAAGAGTATCCAGAACCATTGGCTTTACATGAAGTTGTCGTCAAGG 239
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
Sbjct 169 CGCCGGCGAAGATTAAAGAGTATCCAGAACCATTGGCTTCACATGAAGTTGTCGTTAAAG 228
Query 240 ATTCTTCTGTCTTCTGGGATACTCTCAGGCGGTTTCACTCAATTATGTCCACTAAGTTCA 299
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 229 ATTCTTCTGTCTTCTGGGATACTCTCAGGCGATTTCACTCAATTATGTCCACTAAGTTCA 288
Query 300 TGATTCCTGTGATTGGAGGAAAAGAACTAGATTTGCATGTTTTGTATGTGGAAGTCACGA 359
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 289 TGATTCCTGTGATTGGAGGAAAAGAACTGGATTTGCATGTTTTGTATGTGGAAGTCACGA 348
Query 360 GGAGGGGAGGTTACGAAAAGGTAGTCGTAGAGAAAAAATGGAGGGAAGTTGGAGGAGTGT 419
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 349 GGAGGGGAGGTTACGAAAAGGTAGTCGCAGAGAAAAAATGGAGGGAAGTTGGAGGAGTGT 408
Query 420 TTAGATTCTCTGCGACAACAACAAGTGCTTCGTTTGTCTTAAGGAAACATTATCTCAATC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 TTAGATTCTCTGCGACAACAACAAGTGCTTCGTTTGTCTTAAGGAAACATTATCTCAATC 468
Query 480 TTCTCTTCCATTACGAACAAGTTCATCTCTTCACTGCTCGTGGTCCTCTTCTTCATCCCA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 TTCTCTTCCATTACGAACAAGTTCATCTCTTCACTGCTCGTGGTCCTCTTCTTCATCCCA 528
Query 540 TAGCTACATTTCATGCAAATCCCTCAACGAGCAAAGAAATGGCGCTCGTCGAATATACTC 599
||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 529 CAGCTACATTTCATGCCAATCCATCAACGAGCAAAGAAATGGCTCTCGTCGAATATACTC 588
Query 600 CTCCGAGTATAAGATATCATAATACTCATCCTCCTTCTCAAGGTTCGTCGAGTTTCACAG 659
||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||
Sbjct 589 CTCCGAGTATAAGATATAACAATACTCATCATCCTTCTCAAGGTTCGTCGAGTTTCACAG 648
Query 660 CCATAGGTACAATAGAAGGCAAATTCGATTGTGGTTATCTGGTAAAAGTTAAGTTGGGCT 719
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 649 CCATAGGTACAATAGAAGGCAAATTCGATTGTGGTTATCTGGTAAAAGTAAAGTTGGGCT 708
Query 720 CAGAGATTCTTAACGGCGTTCTTTATCATTCGGCCCAGCCCGGCCCATCATCATCTCCAA 779
|||| |||||||||||||| |||||||| ||||||||||| |||||||||||||||||||
Sbjct 709 CAGAAATTCTTAACGGCGTGCTTTATCACTCGGCCCAGCCAGGCCCATCATCATCTCCAA 768
Query 780 CCGCTGTTCTAAACAATGCCGTTGTACCTTATGTTGAAACTGGGAGGAGACGGCGTCGTT 839
||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 769 GCGCTGATCTAAACGGTGCCGTTGTACCTTATGTTGAAACTGGGAGGAGACGACGTCGTT 828
Query 840 TAGGTAAAAGACGAAGAAGCAGACGCAGAGAAGATCCGAATTACCCGAAACCGAACCGGA 899
|||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct 829 TAGGTAAAAGACGAAGAAGCAGACGCAGAGAAGACCCAAATTACCCGAAACCAAACCGGA 888
Query 900 GCGGTTACAATTTCTTCTTTGCTGAGAAACATTGCAAGCTCAAATCACTTTATCCCAACA 959
|||||||||||||||||||||||||||| |||||||| ||||| || |||||||||||||
Sbjct 889 GCGGTTACAATTTCTTCTTTGCTGAGAAGCATTGCAAACTCAAGTCTCTTTATCCCAACA 948
Query 960 AGGAGAGAGAGTTTACGAAACTTATCGGAGAATCGTGGAGCAATCTCTCTACCGAAGAAC 1019
|||| ||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||
Sbjct 949 AGGAAAGAGAGTTTACGAAAATTATCGGAGAATCGTGGAGTAATCTCTCAACCGAAGAAC 1008
Query 1020 GAATGGTTTATCAAGACATTGGATTGAAGGATAAGGAAAGGTATCAGAGGGAGTTGAATG 1079
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1009 GAATGGTTTATCAGGACATTGGATTGAAGGATAAGGAGAGGTATCAGAGGGAGTTGAATG 1068
Query 1080 AGTACAGAGAAACGTTGAGACTTAGGGATGGTGACATGACAAACGGCAAGGCTTTTTAGG 1139
|||||||||||||||| || || ||||||| ||||||||||||||||||| | |||||||
Sbjct 1069 AGTACAGAGAAACGTTAAGGCTCAGGGATGCTGACATGACAAACGGCAAGTCGTTTTAGG 1128
Query 1140 TGATTT 1145
||||||
Sbjct 1129 TGATTT 1134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51770921286
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5