BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76240.1
Length=1119
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476776 jgi|Araly1|476776|fgenesh2_kg.2__1906__AT1G76240.1 1611 0.0
> Ahg476776 jgi|Araly1|476776|fgenesh2_kg.2__1906__AT1G76240.1
Length=1068
Score = 1611 bits (872), Expect = 0.0
Identities = 1023/1092 (94%), Gaps = 25/1092 (2%)
Strand=Plus/Plus
Query 27 ctctctcttctctctctctcCGCCGAGAATGGTTGGAGTTTTCCGACGATCACTCTCATT 86
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCTCTC-T-TCTCTCTCTCCGCCGAGAATGGTTGGAGTTTTCCGACGATCACTCTCATT 58
Query 87 CCCTAACAAACCTTGCGGCCGATCATCTCCATCGTCAAAGCCACGTGTCTCTCATCACAC 146
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 59 CCCTAACAAACCTTGCGGCCGATCATCTCCACCGTCAAAGCCACGTGTCTCTCACCACAC 118
Query 147 AAGATCCATCAGTCTACCCTGCCGGTCTCATCCCTTAATCTCCCACGTTAACCACGAGAT 206
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 119 AAGATCCATCAGTCTCCCCTGCCGATCTCATCCCTTAATCTCCCACGTTAACCACGAGAT 178
Query 207 CTCTCAGCTCAAATCCTGGTTCTCATTCGCCGGAGAAACTCACAGCCGCACCACCTCTTG 266
|||||||||||||||||||||||| |||| |||||||||||| ||||||||||||| ||
Sbjct 179 CTCTCAGCTCAAATCCTGGTTCTCTTTCGTAGGAGAAACTCACCGCCGCACCACCTCCTG 238
Query 267 GATCACCGACGGTCTCAGTCTCCTCAAGGACGTTCAAGAAACGCTCGCTGATATACTTCA 326
|||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 239 GATCACCGACGGTCTCAGCCTCCTTAAGGACGTTCAAGAAACGCTCGCCGATATACTCCA 298
Query 327 GCTCCCACAATCTCAAGAATCTCTACGAAACCGTCCTGTTTTCTTCGAGAATCTTCTAGA 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GCTCCCACAATCTCAAGAATCTCTACGAAACCGTCCTGTTTTCTTCGAGAATCTTCTAGA 358
Query 387 AGATCTTCTCCGATTCGTTGACGCTTACGGAATCTTCCGTACGTCGATCCTCTGCCTCCG 446
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 359 AGATCTTCTCCGATTCGTTGACGCTTACGGTATCTTCCGTACGTCGATCCTCTGCCTCCG 418
Query 447 TGAGCACCAGTCCGCCGCTCAAGTCGCTCTCCGTAAAAAAGACGACGAGAAAATCGCATC 506
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 419 TGAGCACCAGTCCGCCGCTCAAGTCGCTCTCCGTAAAAAAGACGACCAGAAAATCGCCTC 478
Query 507 TTACCTAAAATCTCGCCGATCTCTCGCAAGAGATATCGCGAAACTGACGTCATCGATCCG 566
|||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 479 TTACCTTAAATCTCGCCGATCTCTCGCGAGAGATATCGCGAAACTGACGTCATCTATCCG 538
Query 567 TGAGCCGAAGACAAAACACCAACACTGCCACGTAGACAACGTTAACGGAACGTACGGTGA 626
||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 539 CGAGCCGAAGACGAAACACCAGCACTGCCACGTGGACAACGTTAACGGAACGTACGGTGA 598
Query 627 CGCAGAGCTTGCGTCAGTTATAGGTGACGTCATTGAAGTAACTGTTTTGGTTTCCGTTGC 686
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 599 CGCAGAGCTTGCGTCAGTTATAGGTGACGTCATTGAAGTCACTGTTTTGGTTTCCGTCGC 658
Query 687 TCTCTTTAACGGCGTTTACTTATCTCTCAGAGCCACCAAAACAACGCCGTTTATAGGGTT 746
|||||||||||| ||| ||||||||||| || ||| |||||| |||||||||||||||||
Sbjct 659 TCTCTTTAACGGTGTTCACTTATCTCTCCGAACCAACAAAACGACGCCGTTTATAGGGTT 718
Query 747 TTTGAAACGATCCGa-aaaaaaGGAGAAACTAGACGAAGGAATCGTGGAGttgaagcaag 805
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 719 TTTGAAACGATCCGAGAAAAAAG-AGAAACTAGACGAAGGAATCGTGGAGTTGAAGCAAG 777
Query 806 ttgaagagaaaagcttgattggtttaagcaagaagaagaacgaagaagtaaagaGTTTGA 865
|||||||||| || ||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 778 TTGAAGAGAAGAGTTTGGTTGGTTTAAGCAAGAAGAAGAGCGAAGAAGTAAAGAGTTTGA 837
Query 866 TGAAGAGGATGATGGAATTGGAGAATTCGATCCGTGAAATCGAATGTGAGAGTGAGAAAG 925
|||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 838 TGAAGAAGATGATGGAATTGGAGAATTCTATCCAAGAAATCGAATGTGAGAGTGAGAAAG 897
Query 926 TGTTTAGGGGTTTGATTAGCACTCGAGTCTCATTGCTTAATGCCCTAACACATTAACTAA 985
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 TGTTTAGGGGTTTGATTAGCACTCGAGTCTCATTGCTTAATGCCCTAACACATTAACTA- 956
Query 986 TTATCACTCTCattctttttcttcttgtttcctgtctatttgcgttattttgtcacatta 1045
| || | || | |||| ||||| |||| | ||| ||| || || |||||||||
Sbjct 957 T-AT-A-TC--A--CTTTCA-TTCTT-TTTC-T-TCT-TTT---TT-TT--GTCACATTA 998
Query 1046 tttttattatttgtATGAGGTTAACTACATGAAAGAAAATAGAAAAACAAATAAATAAAC 1105
||||||||||||||||||| |||||||||||||| ||||||||||| ||| ||||||||
Sbjct 999 TTTTTATTATTTGTATGAG-TTAACTACATGAAACAAAATAGAAAA-CAATTAAATAAAA 1056
Query 1106 GATACTTTACAT 1117
||||||||||||
Sbjct 1057 GATACTTTACAT 1068
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41706471198
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5