BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76360.1
Length=1888
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476789 jgi|Araly1|476789|fgenesh2_kg.2__1919__AT1G76360.1 1358 0.0
Ahg491086 jgi|Araly1|491086|fgenesh2_kg.7__519__AT4G35600.1 139 7e-32
> Ahg476789 jgi|Araly1|476789|fgenesh2_kg.2__1919__AT1G76360.1
Length=1827
Score = 1358 bits (735), Expect = 0.0
Identities = 835/883 (95%), Gaps = 7/883 (1%)
Strand=Plus/Plus
Query 873 AGTGTGAAGTGAGATTCTTAGGGAAGTTTCATCATCCAAATTTGGTGAAGCTCTTGGGTT 932
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 861 AGTGTGAAGTGAGATTCCTAGGGAAGTTTCATCATCCAAATTTGGTGAAGCTCTTGGGTT 920
Query 933 ATTGCTGGGAAGAGAACCAGTTCCTTTTGGTCTATGAGTATTTGCCTAAAGGAAGCCTTG 992
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 921 ATTGCTGGGAAGAGAATCAGTTCCTCTTGGTCTATGAGTATTTGCCTAAAGGAAGCCTTG 980
Query 993 AAAATCACCTCTTCTCAAAAGGAGCAGAGGCATTACCTTGGGATACACGTTTGAAGATAG 1052
||||||||||||| |||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct 981 AAAATCACCTCTTTTCAAAAGGAGCAGAGGCATTGCCATGGGACACACGTTTGAAGATAG 1040
Query 1053 CCATTGAAGCAGCTCAAGGACTTACCTTTTTGCATAACTCCGAGAAGAGTGTTATCTATA 1112
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1041 CCATTGAAGCAGCTCAAGGACTTACCTTTTTGCATAACTCCGAAAAGAGTGTTATCTACA 1100
Query 1113 GAGACTTCAAAGCTTCCAATATTCTTCTCGATTCCAACTTCCACGCCAAGCTTTCAGACT 1172
|||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1101 GAGACTTCAAGGCTTCCAATATTCTTCTTGATTCCACCTTCCACGCCAAGCTTTCAGACT 1160
Query 1173 TCGGACTAGCTAAAAATGGGCCCATTAATGGATTCTCACACGTGACCACACGTGTCATGG 1232
| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1161 TTGGACTAGCCAAAAATGGCCCCATTAATGGATTCTCACACGTGACCACACGTGTCATGG 1220
Query 1233 GCACACAAGGCTATGCAGCTCCCGAGTACATGGCTACAGGTCATCTATATGTGAGGAGTG 1292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1221 GCACACAAGGCTATGCAGCTCCCGAGTACATGGCTACAGGTCATCTATATGTGAGGAGTG 1280
Query 1293 ATGTTTACGGGTTTGGAGTGGTACTCTTAGAGCTCTTAACCGGTTTAAGAGCATTAGACC 1352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1281 ATGTTTACGGGTTTGGAGTGGTACTCTTAGAGCTCTTAACCGGTTTAAGAGCATTAGACC 1340
Query 1353 CAAACCGACCATCTGCGCAACAAAATCTTGTGGAATGGGCTAAACCGGGGTTGAACCAGA 1412
|||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||
Sbjct 1341 CAAACCGACCATCTGCGCAACAGAATCTTGTGGAATGGGCTAAACCGGTGCTGAACCAGA 1400
Query 1413 AGAAGAAGGTTCAGAAAATGATGGATCCACGGCTCGAGCAGAAGTATCCACTTTTGGCGG 1472
|||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| |
Sbjct 1401 AGAAGAAGGTACAGAAAATGATGGACCCACGGCTCGAGCACAAATATCCACTTTTGGCAG 1460
Query 1473 TGACCAAAACCGCGGAGCTCATTCTTCGGTGTCTGGAGGCTGACCCGAAAAACCGACCGC 1532
|| ||||||||| ||||| |||||||||||||| ||||||||||| ||||||||||| |
Sbjct 1461 TGGTCAAAACCGCCGAGCTTATTCTTCGGTGTCTCGAGGCTGACCCAAAAAACCGACCAC 1520
Query 1533 CAATGGATGATGTGCTTAGAGAATTAGAAGTCGTAAGGACTATCAGAGACCAACCCCAAG 1592
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1521 CAATGGATGATGTGCTTAGAGAATTAGAAGTTGTAAGGACTATCAGAGACCAACCCAAAG 1580
Query 1593 AAGAGAGGCGTAAAAGGAGCAGTGGT-C----CA-GATACTAACCGGGTTCGTGGAAATG 1646
||||||| |||||||||||||||||| | || |||| ||||||||||||||||||||
Sbjct 1581 AAGAGAGACGTAAAAGGAGCAGTGGTTCTGATCATGATAATAACCGGGTTCGTGGAAATG 1640
Query 1647 ATTCACCATATGGCCGTAGAACCGGTCGAACCGGATAGTCAAAGAGTTCTTTTGGATCAG 1706
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1641 ATTCACCGTATGGCCGTAGAACCGGTAGAACCGGATAGTCAAAGAGTTCTTTTGGATCAG 1700
Query 1707 TCATACGTATATTACACAGTATATACAGACGAACAACCTTTAA 1749
||||| | ||| ||||| ||||||||||||||| ||||||||
Sbjct 1701 TCATATATGTAT-ACACACTATATACAGACGAACCACCTTTAA 1742
Score = 955 bits (517), Expect = 0.0
Identities = 739/837 (88%), Gaps = 52/837 (6%)
Strand=Plus/Plus
Query 70 AATCTTTCAATTaaaatcccc-----ag-aa-a-agaaaga-aaaaagggacagttggag 120
||||||||||||||||||||| || || | ||||| | ||||||||| ||||||||
Sbjct 1 AATCTTTCAATTAAAATCCCCAAAGGAGAAAGATAGAAAAAGAAAAAGGGAGAGTTGGAG 60
Query 121 aaaaagaTTCTCTC--AATCTTATGATCGTTAAGGGTGAAACAAAGATTACTAAAAACAG 178
||||| ||||||| |||||||||||||| ||||||||| ||||||||||| |||||||
Sbjct 61 -AAAAGTTTCTCTCTAAATCTTATGATCGTAAAGGGTGAAGCAAAGATTACTCAAAACAG 119
Query 179 AGGAAAAACAGAGTAAAGATTACTCAAGAGTCAAGAGCTGGTTTGATCTTAATGGGAAAC 238
||| ||||||||| | || |||||||||||||||| ||||||||||| |||
Sbjct 120 AGG-AAAACAGAG----G-------AA-AGTCAAGAGCTGGTTTTATCTTAATGGGGAAC 166
Query 239 ATCTGTCCTGGCTCTGGATCTTCCACTGTT-AAC---CAC-GA-ACCTGTCTCCACCAAA 292
||||||||||||||||||||||||||||| ||| || || |||| ||||||||||
Sbjct 167 TTCTGTCCTGGCTCTGGATCTTCCACTGTTCAACATGAACAGAGCCCTGCCTCCACCAAA 226
Query 293 CCCCTCCCAGTGAGACGTGTGCAGACCCCAGAGAATAAAAAGTTTCCTCCGCCGCTGGTG 352
|||||||||||||||||||| || | ||||||||||||||||||||| ||| |||| ||
Sbjct 227 CCCCTCCCAGTGAGACGTGTCCACAACCCAGAGAATAAAAAGTTTCCACCGGCGCTTGTA 286
Query 353 GCGATGCCGGCGTTACATCCCACGTTTCC-ACTGCCGGAAACAGGACAT-AAACTGAGAC 410
||||||||||||||| |||||| |||||| | |||||||||||||||| |||| |||||
Sbjct 287 GCGATGCCGGCGTTAAATCCCAAGTTTCCGGC-GCCGGAAACAGGACATAAAAC-GAGAC 344
Query 411 CCGCCGCTACCCCGCCTCGTGAAAAACCGCAACATAGGACGACGAGATCCGTCGAGAACC 470
| ||||||||||| ||||| ||||||||||||| | || |||||||||||||| | ||
Sbjct 345 CTGCCGCTACCCCACCTCGGGAAAAACCGCAAC--A-GAGGACGAGATCCGTCGCTACCC 401
Query 471 CACCTCGTGAAAAACCGCAGGAGAAGACAAGATCCGTCGAGAACCCGCCTCGTGAAAAAC 530
|||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 402 CACCTCGTGAAAAACCGCAGGAGAAGACAAGATCCGTCGAAAACCCACCTCGGGAAAAAC 461
Query 531 CGCAGGAGAAAACAAGATCCGTTG-AAA--C-CC-C-------ACCTCAGGAGAAGACGA 578
|||||||||| || |||||||| | ||| | || | ||| |||||||||||||
Sbjct 462 CGCAGGAGAAGACGAGATCCGTCGAAAACCCACCTCGAGAAGAACCGCAGGAGAAGACGA 521
Query 579 GACCCGTCGATAATCCGCCGTCAAAGCCGGTAGAAAAATTGGGTTTAGGAAGGAAAGCAG 638
|| |||||||||||||||| | |||||||||||||||| ||||||||||||| |||||||
Sbjct 522 GATCCGTCGATAATCCGCCATTAAAGCCGGTAGAAAAACTGGGTTTAGGAAGAAAAGCAG 581
Query 639 TGCCACCGAGTGGGAAGATAGTGACACCTAATCTAAAGATGTTTACATTAGTGGAGCTTA 698
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 582 TGCCACCGAGCGGGAAGATAGTGACACCAAATCTAAAGATGTTTACATTAGTGGAGCTTA 641
Query 699 AGACGGCTACAAAGAACTTT-CGACCAGAATCTGTGATCGGAGAAGGTGGATTCGGACAG 757
|||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 642 AGACGGCTACAAAGAA-TTTCCGACCAGAGTCTGTGATCGGAGAAGGTGGATTCGGACAG 700
Query 758 GTTTTTAAAGGATGGGTGGATGAGAAAACATTAGCTCCGTCGAGAGCTGGCGTCGGAATA 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 701 GTTTTTAAAGGATGGGTGGATGAGAAAACATTAGCTCCGTCGAGAGCTGGCGTCGGAATA 760
Query 818 CCAGTCGCCGTCAAGAAATCAAACCCTGATAGTGAGCAAGGCTTACATGAATGGCAG 874
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 761 CCAGTCGCCGTTAAGAAATCAAATCCTGATAGTGAGCAAGGCTTACATGAATGGCAG 817
> Ahg491086 jgi|Araly1|491086|fgenesh2_kg.7__519__AT4G35600.1
Length=1476
Score = 139 bits (75), Expect = 7e-32
Identities = 327/444 (74%), Gaps = 35/444 (8%)
Strand=Plus/Plus
Query 887 TTCTTAGGG-AAG-TTTCATCATCC-AAATTTGGTGAAGCTCTTGGGTTATTGCT-GGGA 942
||||| ||| | | ||||| || || |||| |||||||| | |||||||| || | | ||
Sbjct 609 TTCTT-GGGTATGCTTTCA-CA-CCGAAATCTGGTGAAGTTGTTGGGTTACTG-TCGTGA 664
Query 943 AGAGAACCAG-TTCCT-TTTGGTCTATGAGTAT-TTGCCTAAAGGAAGCCTTGAAAATCA 999
||| || || || || || |||||||||| | |||| |||||||||||||| | |||
Sbjct 665 AGACAAAGAGCTT-CTCCTT-GTCTATGAGT-TCATGCCCAAAGGAAGCCTTGAGAGTCA 721
Query 1000 CCTCTTCTCAAAAGGAGCAGAGGCATTACCTTGGGA--TACACGTTTGAAGATAGCCATT 1057
|||| | | | | | | || | || |||||||| || | | | ||||| | ||
Sbjct 722 --TCTTTTTAGACGAAAC-GATCCTTTTCCTTGGGACTTA-A-GGATCAAGATTGTGATC 776
Query 1058 GAAGCAGCTCAAGGACTTACCTTTTTGCATAAC-TCCGAGAAGAG-TGTTATCTATAGAG 1115
| ||||||| || ||| | ||| | || | | | | | ||||| || ||||||||||
Sbjct 777 GGTGCAGCTCGTGGGCTTGCGTTTCTACACAGCTTAC-A-AAGAGAAGTCATCTATAGAG 834
Query 1116 ACTTCAAAGCTTCCAATATTCTTCTCGATTCCAACT-TCCACGCCAAGCTTTCAGACTTC 1174
||||||||||||||||||| ||||| ||||| |||| | |||| ||||||||||| |||
Sbjct 835 ACTTCAAAGCTTCCAATATACTTCTTGATTCGAACTATG-ACGCAAAGCTTTCAGATTTC 893
Query 1175 GGACTAGCTAAAAATGGGCCCATTA-ATG-GATTCTCACACGTGACCAC-ACGTGTCATG 1231
||| |||| ||| | || ||| | | | || |||||||| || || | | |||||
Sbjct 894 GGATTAGC-AAAGCTAGGACCAGCAGACGAGAAG-TCACACGTTACAACTAGGA-TCATG 950
Query 1232 GGCACACAAGGCTATGCAGCTCCCGAGTACATGGCTACAGGTCATCTATATGTGAGGAGT 1291
|||||| | || ||||| ||||| || || ||||| ||||| ||| |||| || | ||||
Sbjct 951 GGCACATATGGTTATGCTGCTCCTGAATATATGGCAACAGGCCATTTATACGTTAAGAGT 1010
Query 1292 GATGT-TTACGGGTTTGGAGTGGT 1314
|| || || || ||||| |||||
Sbjct 1011 GACGTATT-CGCCTTTGGTGTGGT 1033
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70924036190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5