BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76430.1
Length=1900
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476800 jgi|Araly1|476800|fgenesh2_kg.2__1930__AT1G76430.1 2427 0.0
Ahg335330 jgi|Araly1|335330|fgenesh1_pg.C_scaffold_1001895 878 0.0
> Ahg476800 jgi|Araly1|476800|fgenesh2_kg.2__1930__AT1G76430.1
Length=1749
Score = 2427 bits (1314), Expect = 0.0
Identities = 1554/1669 (93%), Gaps = 19/1669 (1%)
Strand=Plus/Plus
Query 69 TATTGTTCTCA-TTCTCCGTATCTTGAAAAAATTCTTAAAAAATCGACGAAACGATGCCG 127
||||||||||| || || ||||||||||||||| ||| ||||||||||||||||||||
Sbjct 28 TATTGTTCTCATTTTTCTGTATCTTGAAAAAATCCTT---AAATCGACGAAACGATGCCG 84
Query 128 GAGTTAAGTTTATTATCGGCGTTAGACGCAGCGAGGATACAGTGGTACCATTTCAAAGCG 187
| |||||| | |||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 85 GCGTTAAGAGTGTTATCGGCTTTAGATGCGGCGAGGATACAGTGGTACCATTTCAAAGCC 144
Query 188 ATAATAGTCGCCGGAATGGGACTTTTCACCGACGCATACGATCTTTTCTGTATAGCTCCG 247
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 145 ATAATAGTCGCCGGCATGGGACTTTTCACCGACGCTTACGATCTTTTCTGTATAGCTCCG 204
Query 248 ATCATGAAAATGATAAGTCAAATATATTACCACAAAGACTCAATCGGAACCGCTCTTCTC 307
|||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 205 ATCATGAAGATGATAAGTCAAATCTATTACCACAAAGACTCAATCGGAACCGCTATTCTC 264
Query 308 TCAACTTCTTACGCAATCGCTCTTCTTGGCACCGCGTTAGGTCAGCTCATCTTTGGTTAC 367
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 265 TCAACTTCTTACGCAATCGCTCTTCTTGGCACCGCTTTAGGTCAGCTCATCTTTGGTTAC 324
Query 368 TTAGGTGACCGAGTCGGACGTCGTAAAGTCTATGGACTTAGTCTCTTGATCATGGTGTTT 427
||||| |||||| |||||||||||||||||||||||||| ||||||| |||||| | |||
Sbjct 325 TTAGGCGACCGAATCGGACGTCGTAAAGTCTATGGACTTTGTCTCTTAATCATGATTTTT 384
Query 428 AGCTCCTTTGGTTGTGGCTTCTCTGTTTGCACGACTCGACGTTCTTGTGTTATGGTTAGT 487
||||| |||||||||||||||||||||||||||||||| |||||||| ||| ||||||||
Sbjct 385 AGCTCTTTTGGTTGTGGCTTCTCTGTTTGCACGACTCGGCGTTCTTGCGTTTTGGTTAGT 444
Query 488 CTTGGATTCTTTAGATTCGTTCTTGGACTTGGAATCGGTGGAGATTATCCTCTTTCGGCC 547
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 445 CTTGGATTCTTTAGATTCGTTCTTGGACTTGGAATCGGTGGAGATTATCCTCTTTCCGCC 504
Query 548 ACGATTATGTCGGAGTTTGCTAACAAAAGGACGCGTGGAGCTTTTATCGCTGCCGTGTTC 607
||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 505 ACGATTATGTCGGAGTTCGCTAATAAAAGGACGCGTGGAGCTTTTATAGCTGCCGTGTTC 564
Query 608 TCGATGCAAGGGTTAGGGATTTTGATGAGCTCTGCTGTGACTATGGTTGTGTGCT-TGGC 666
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 565 TCGATGCAAGGGTTAGGGATTTTGATGAGCTCTGCTGTGACTATGGTTGTGTG-TGTGGC 623
Query 667 GTTCAAGAACGCTG--G-AGAGGGGAG-TTCGGAGAAGACGAACGTGGCGGGGTTAGAGA 722
||| |||||||| | | ||||||||| || ||||||||||||||||||||||||||| |
Sbjct 624 GTTTAAGAACGCAGCCGGAGAGGGGAGCTT-GGAGAAGACGAACGTGGCGGGGTTAGAAA 682
Query 723 CTTTGGCTCCGCCGGAATCGGATATAGCGTGGAGGTTGATTCTTATGATCGGAGCTCTTC 782
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 683 CTGTGGCTCCCCCGGAATCGGATATAGCGTGGAGGTTGATTCTTATGATCGGAGCTCTTC 742
Query 783 CCGCCGCGTTAACGTTTTACTGGCGAATGCTCATGCCTGAAACCGCCAGATACACAGCAT 842
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 743 CCGCTGCGTTAACGTTTTACTGGCGAATGCTCATGCCTGAAACCGCCAGATACACAGCAT 802
Query 843 TGGTTGAGAACAATGTAGTCCAAGCAGCAAAAGACATGCAAAGAGTCATGTCCGTATCAA 902
|||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
Sbjct 803 TGGTGGAGAACAATGTAGTCGAAGCAGCAAAAGACATGCAAAGAGTCATGACCGTATCCA 862
Query 903 TGATATCTCAAATAACCGAAGATTCATCATCGGAGCTAGAACAACCACCGTCTTCTTCCT 962
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 863 TGATATCTCAAATAGCCGAAGATTCATCATCGGAGCTAGAACAACCACCGACTTCCTCCT 922
Query 963 CATACAAACTCTTCTCTCGCCGTTTCCTCAGTCTCCACGGTCGAGACCTCTTCGCAGCCT 1022
| |||||||||||||||||||||||||| || ||||| |||||||||||||||||||
Sbjct 923 -A--CAAACTCTTCTCTCGCCGTTTCCTCAACCTTCACGGCCGAGACCTCTTCGCAGCCT 979
Query 1023 CAGCCAATTGGTTCCTAGTGGACGTCGTCTTCTATACAAGCAATCTCCTTCTCTCTCAAA 1082
|||| |||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||
Sbjct 980 CAGCTAATTGGTTCCTAGTCGACGTCGTCTTCTATACAAGCAACCTCCTCCTCTCTCAAA 1039
Query 1083 TCTTTAACTTCTCCAACAAACC-CCTCAACTCCACAAACGTCTACGACTCTGCCTTTGAA 1141
|||| || || ||||||||||| || ||| ||||||||||||||||| || ||||| |||
Sbjct 1040 TCTTCAATTTATCCAACAAACCTCC-CAATTCCACAAACGTCTACGAGTCCGCCTTCGAA 1098
Query 1142 GTAGCTAAGCTTGCAGCCATTGTAGCCGCTTGCTCCACCATCCCTGGTTACTGGTTCACG 1201
||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1099 GTATCTAAGCTCGCAGCCATTGTAGCCGCTTGCTCCACCATCCCCGGTTACTGGTTCACC 1158
Query 1202 GTCTATTTCATCGATAAAATCGGTAGAGTCAAGATTCAGATGATGGGGTTTTTCCTTATG 1261
|| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 1159 GTTTATTTCATCGATAAAATCGGTCGAGTCAAGATTCAGATGATGGGTTTTTTCCTTATG 1218
Query 1262 GCGGTCGTTTACTTAGTCGCTGGGATTCCGTATAGTTGGTATTGGTCTAAGCATGAGAAG 1321
|| || ||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1219 GCCGTTGTTTACTTAGTCGCTGGGATTCCATACAGTTGGTATTGGTCTAAGCATGAGAAG 1278
Query 1322 ACTAATAAAGGCTTTATGGTTCTCTACGGATTGATTTTCTTCTTTAGCAACTTTGGCCCT 1381
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1279 ACTAAAAAAGGCTTTATGGTTCTCTACGGATTGATTTTCTTCTTTAGCAACTTTGGTCCT 1338
Query 1382 AACACGACGACGTTTATCATCCCGGCGGAGCTTTTTCCGGCTAGGTTTAGGTCCACGTGT 1441
|||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1339 AACACGACAACGTTTATTATCCCGGCGGAGCTTTTTCCGGCAAGGTTTAGGTCCACATGT 1398
Query 1442 CACGGGATATCTGGAGCTGCAGGGAAGTTTGGTGCGATTGTTGGCACTGTCGGTTTCTTG 1501
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1399 CACGGGATATCTGGAGCTGCCGGGAAGTTTGGTGCGATTGTTGGCACTGTTGGTTTCTTG 1458
Query 1502 TGGGCCACGAGACACCATGAAGAGGACGGTTTTCCAGATGTGAAACGTGTGAGAATCGCG 1561
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1459 TGGGCCACGAAACACCATGAAGAGGACGGTTTTCCAGACGTGAAACGTGTGAGAATCGCG 1518
Query 1562 TTTTTGATCCTTGGCGGCGTTTGTATCGCGGGAATGATCGTAACGTATTTGTTCACGCGT 1621
|||||||||||||||||||||||||| || ||||||||||| |||||||| ||||| |||
Sbjct 1519 TTTTTGATCCTTGGCGGCGTTTGTATAGCTGGAATGATCGTTACGTATTTCTTCACTCGT 1578
Query 1622 GAAACTATGGGAAGATCGTTAGAAGAGAACGAAGACGAGATTGTTTCCACGTCAGCAGGG 1681
||||| ||||||||||| |||||||||||||||||| |||||| | | ||||||| |
Sbjct 1579 GAAACGATGGGAAGATCATTAGAAGAGAACGAAGACAAGATTGGTACAACGTCAGGA--- 1635
Query 1682 TCGTCTCCTGCGAATGAGTTACTTCGGAGACAATACTAATTTCAAGATC 1730
|||||| |||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 1636 TCGTCTTCTGCGAATGAGTTACTTCCGAGACAATACTGATTTCGAGATC 1684
> Ahg335330 jgi|Araly1|335330|fgenesh1_pg.C_scaffold_1001895
Length=1611
Score = 878 bits (475), Expect = 0.0
Identities = 1218/1564 (78%), Gaps = 102/1564 (7%)
Strand=Plus/Plus
Query 138 TATTATCGGCG-TTAGACGCAGCGAGGATACAGTGGTACCATTTCAAAGCGATAATAGTC 196
|||| ||| || || || ||||| | ||||| |||||||||||||||||||| |||||
Sbjct 14 TATTGTCGTCGCTT-GATGCAGCTCGAATACAATGGTACCATTTCAAAGCGATCATAGTA 72
Query 197 GCCGGAATGGGACTTTTCACCGACGCATACGATCTTTTCTGTATAGCTCCGATCATGAAA 256
|| |||||||| || ||||| |||||||||||||||||||| || || ||| || |||||
Sbjct 73 GCAGGAATGGGTCTATTCACTGACGCATACGATCTTTTCTGCATCGCACCGGTCTTGAAA 132
Query 257 ATGATAAGTCAAATATATTACCACAAAGACTCAATCGGAAC-C-GCTCTTCTCTCAACTT 314
||||| || || | |||||| || ||||||||| ||| | || |||| || ||||
Sbjct 133 ATGATTAGCCATGTTTATTACAACGGTGACTCAATC--AACACGGCGGTTCTTTCGACTT 190
Query 315 CTTACGCAATCGCTCTTCTTGGCACCGCGTTAGGTCAGCTCATCTTTGGTTACTTAGGTG 374
||||||| |||||||| || ||||| || ||||| ||| |||| |||||| | ||||
Sbjct 191 CTTACGCCATCGCTCTACTCGGCACAGCCACGGGTCAACTCCTCTTCGGTTACCTCGGTG 250
Query 375 ACCGAGTCGGACGTCGTAAAGTCTATGGACTTAGTCT-CTTGATCATGGTGTTTAGCTCC 433
|||||||||| ||||| |||||| |||||| || | || || ||| | |||||||
Sbjct 251 ACCGAGTCGGTCGTCGCCGAGTCTACGGACTTTGTTTGATT-ATTATGATCCTTAGCTCT 309
Query 434 TTTGGTTGTGGCTTCTCTGTTTGCACGACTCGACGTTCTTGTGTTATGGTTAGTCTTGGA 493
||||| |||||||| || || ||||| ||||| || ||||||||||||||||| || ||
Sbjct 310 TTTGGCTGTGGCTTTTCCGTGTGCACCACTCGTCGGTCTTGTGTTATGGTTAGCCTCGG- 368
Query 494 TTCTTT-AGATTCGTTCTTGGACTT-GGAATCGGTGGAGATTATCCTCTTTCGGCCACGA 551
|| ||| | || ||||||| || || |||||||| ||||| || |||||||| || |
Sbjct 369 TTTTTTCCGGTTTATTCTTGG-TTTGGGTATCGGTGGTGATTACCCGCTTTCGGCTACCA 427
Query 552 TTATGTCGGAGTTTGCTAACAA-AAGGACGCGTGGAGCTTTTATCGCTGCCGTGTTCTCG 610
||||||| ||||||||||| || || ||| ||||| || ||||| ||||| ||||||||
Sbjct 428 TTATGTCAGAGTTTGCTAATAAGAA-GACACGTGGCGCGTTTATTGCTGCGGTGTTCTCC 486
Query 611 ATGCAAGGGTTAGGGATTTTGATGAGCTCTGCTGTGACTATGGTTGTGTGCTTGGCGTTC 670
||||||||||| ||||||||| | |||||||| ||||| |||| ||| ||| |||||||
Sbjct 487 ATGCAAGGGTTGGGGATTTTGGTTAGCTCTGCCGTGACCATGGCTGTTTGCGTGGCGTTT 546
Query 671 AAGAACGCTGGAGAGGGGAGTTCGGAGAAGACGAACGTGGCGGGGTTAGAGACTTTGGCT 730
|||| || | | | || | ||| |||| | | | | || | | | ||||
Sbjct 547 AAGAGCGGT-G-GTGGTG-GTTTGGAG--G-TGGA--T-GC-------G-G-C---GGCT 585
Query 731 CCGCCGGAATCGGATATAGCGTGGAG-GTTGATTCTTATGATCGGAGCTCTTCCCGCCGC 789
||| | ||| | || | |||||||| || || ||||||||||| |||||||| || ||
Sbjct 586 CCGACAGAAGCCGACGTGGCGTGGAGACTT-ATACTTATGATCGGTGCTCTTCCTGCTGC 644
Query 790 GTTAACGTTTTACTGGCGAATGCTCATGCCTGAAACCGCCAGATACACAGCA-TTGGTTG 848
|| || || || ||||||||||| |||||||||||||| |||||||||||| || || |
Sbjct 645 ATTGACATTCTATTGGCGAATGCTGATGCCTGAAACCGCAAGATACACAGCACTT-GTGG 703
Query 849 AGAACAATGTAGTCCAAGCAGCAAAAGACATGCAAAGAGTCATGTCCGTATCAATGATAT 908
| |||||| | ||||||||||||||||||||||||||||||||||| |||| | ||||
Sbjct 704 AAAACAATATCGTCCAAGCAGCAAAAGACATGCAAAGAGTCATGTCAATATC--TCATAT 761
Query 909 CTCAAATAACCGAAGATTCATC-ATCGGAGCTAGAACAACCACCGTCTTCTTCC---T-C 963
||| | | |||| || | | |||||| | | || || || || || | |
Sbjct 762 CTCCGA---C-GAAGC--CA-CGA-CGGAGCCACCTCCTCCTCC-TCCTCCGCCCCCTTC 812
Query 964 ATACAAACTCTTCTCTCGCCGTTTCCTCAGTCTCCACGGTCGAGACCTCTTCGCAGCCTC 1023
|||||||||||||| ||| | ||| || ||||||| || || ||||||||||| |||||
Sbjct 813 CTACAAACTCTTCTCCCGCTGCTTCTTCCGTCTCCATGGCCGCGACCTCTTCGCCGCCTC 872
Query 1024 AGCCAATTGGTTCCTAGTGGACGTCGTCTTCTATACAAGCAATCTCCTTCTCTCTCAAAT 1083
||||||||| || | ||| | |||||||| |||||||| ||||| ||||| || ||
Sbjct 873 CTTTAATTGGTTCTTAATAGACATTGTCTTCTACACAAGCAACCTCCTCCTCTCCCATAT 932
Query 1084 CTTTA---ACTTCTCCAACAAACC--C--C-TCAACTC-CACAAA-CGTCTACGACT-CT 1132
||| | ||| |||||||||||| | | || || | || ||| |||||| || | |
Sbjct 933 CTTCAGTCACTACTCCAACAAACCTTCTTCCTCCAC-CGCAGAAAACGTCTATGA-TGCA 990
Query 1133 GCCTTTGAAGTAGCT-AAGCTT-GCAGCCATTGTAGCCGCTTGCTCCACCAT-CCCTGGT 1189
||||| ||||| || || || | |||||| | ||||||||||| ||||| ||| |||
Sbjct 991 GCCTTCGAAGTGGCGGAA--TTAGGAGCCATCATTGCCGCTTGCTCAACCATTCCC-GGT 1047
Query 1190 TACTGGTTCACGGTCTATTTCATCGATAAAATCGGTAGAGTCAAGATTCA-GATGATGGG 1248
|| |||||||| || || |||||||| || || ||| | ||||| || || | | |||||
Sbjct 1048 TATTGGTTCACAGTTTACTTCATCGACAAGATAGGTCGTGTCAAAATCCAAGTT-ATGGG 1106
Query 1249 GTTTTTCCTT-ATGGCGGTCGTTTACTTAGTCGCTGGGATTCCGTATAGTTGGTATTGGT 1307
||||||| || ||||| || |||| ||||| |||||||||||||| |||||||||||||
Sbjct 1107 GTTTTTC-TTCATGGCCGTTATTTATTTAGTTGCTGGGATTCCGTACAGTTGGTATTGGT 1165
Query 1308 CTAAGCATGAGAAGACTAATAAAGGCTTTATGGTTCTCTACGGATTGATTTTCTTCTTTA 1367
| ||||| ||| ||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1166 CAAAGCACGAGCAGAATAATAAAGGCTTTATGGTTCTCTACGGTTTGATTTTCTTCTTTT 1225
Query 1368 GCAACTTTGG-CCCTAACACGACGACGTTTATCAT-CCCGGCGGAGCTTTTTCCGGCTAG 1425
|||||||||| ||| ||||| || || ||||| || |||| | |||||||||||||||||
Sbjct 1226 GCAACTTTGGTCCC-AACACTACAACTTTTATTATTCCCG-CAGAGCTTTTTCCGGCTAG 1283
Query 1426 GTTTAGGTCCACGTGTCACGGGATATCTGGAGCTGCAGGGAAGTTTGGTGCGATTGTTGG 1485
||||||||| || || |||||||| ||||| || || || ||| |||| || ||||| ||
Sbjct 1284 GTTTAGGTCTACTTGCCACGGGATCTCTGGCGCCGCTGGTAAGCTTGGGGCTATTGTGGG 1343
Query 1486 CACTGTCGGTTTCTTGTGGGCCAC---GA-GAC--AC--C-ATGA-AGAGGAC--GGTTT 1533
|||||| || ||||||||||| || || || | | |||| | | || |||||
Sbjct 1344 CACTGTTGGGTTCTTGTGGGCTACCAAGAAGATGGAAGGCGATGATAAAA-ACCAGGTTT 1402
Query 1534 -T-CCAGATGTGAAACGTGTGAGAATCGCGTTT-TTGATCCTTGGCGGCGTTTGTATCGC 1590
| || || ||||| ||| ||||| | || ||| ||||| ||||| ||||||||||| ||
Sbjct 1403 ATACC-GAAGTGAACCGTATGAGAGTTGC-TTTCTTGATTCTTGGTGGCGTTTGTATTGC 1460
Query 1591 GGGAATGATCGTAACGTATTTGTTCACGC-GTGAAACTATGGGAAGATCGTTAGAAGAGA 1649
||||| | || |||||||| ||||| | ||||||||||||||||||||||| ||||
Sbjct 1461 CGGAATCTTTGTGACGTATTTCTTCACTAAG-GAAACTATGGGAAGATCGTTAGAGGAGA 1519
Query 1650 ACGA 1653
||||
Sbjct 1520 ACGA 1523
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71381119130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5