BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G76570.1 Length=1055 Score E Sequences producing significant alignments: (Bits) Value Ahg476815 jgi|Araly1|476815|fgenesh2_kg.2__1945__AT1G76570.1 1541 0.0 > Ahg476815 jgi|Araly1|476815|fgenesh2_kg.2__1945__AT1G76570.1 Length=1022 Score = 1541 bits (834), Expect = 0.0 Identities = 945/998 (95%), Gaps = 10/998 (1%) Strand=Plus/Plus Query 8 TGTTTCAGGAGAAGC-TT--TCATCACTTTCCTCAAGTTATTCGTCAATTCATTCTCTTC 64 ||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||| Sbjct 11 TGTTTCAGGAGAAGCTTTCATCATCACTTTCCTCAAGTTATTCGTCATTTCATTCTCTTC 70 Query 65 CGAGGATTCTCGTGTCC-AAG---CCTCGTAATAGAATTGCCGTGACAAAGTCCCGTTCG 120 |||||| | |||| || || |||||| |||||| || ||||||| |||||||||| Sbjct 71 AGAGGATACACGTG-CCGGAGCCTCCTCGTTGTAGAATCGCTGTGACAAGGTCCCGTTCG 129 Query 121 ATTTGCAGAGCTTCGTGGCAAGAGCTCGCCGGAGTGTTGGTTTTCTCGGCGATTCCATTC 180 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 130 ATCTGCAGAGCTTCGTGGCAAGAGCTCGCCGGAGTGTTGGTTTTCTCGGCGATTCCATTC 189 Query 181 ACTGCGGTTAAAGCAATTGCAAATAGCTCAATAGGAGTTTCTCTACGGCGGAGATTAGAA 240 || |||||||||||||| |||||||||||| |||| | ||| ||||||||||||| ||| Sbjct 190 ACGGCGGTTAAAGCAATAGCAAATAGCTCACTAGGCGAATCTTTACGGCGGAGATTGGAA 249 Query 241 GAGAAAAAGAAGGAAGCCGTAGAGAATTCTTCAAGATTCAAGTCTAAAGCTCAGGAAGCT 300 |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||| Sbjct 250 GAGAAAAAGAAGGAAGCCGTTGAGAATTCTTCAAGATTCAAGGCTAAAGCTCAGGAGGCT 309 Query 301 AGAAACGACAGCAAGTGGTATGGAAAAGAACGTCCCCGTTGGTTTGGTCCAATCCCATAT 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 310 AGAAACGACAGCAAGTGGTATGGAAAAGAACGTCCCCGTTGGTTTGGTCCAATCCCATAT 369 Query 361 GATTATCCTCCATACCTTACAGGAGAACTTCCAGGGGATTATGG-TTTCGACATTGCAGG 419 |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct 370 GATTATCCTCCATACCTTACAGGAGAACTTCCAGGGGATTATGGATTT-GACATTGCAGG 428 Query 420 ACTTGGCAAAGATCGTTTGACCTTTGATAAGTATTTCAACTTTGAAATACTTCATGCTCG 479 ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 429 ACTTGGCAAGGATCGTTTGACCTTTGATAAGTACTTCAACTTTGAAATACTTCATGCTCG 488 Query 480 TTGGGCCATGCTTGCAGCATTGGGTGCTCTAATCCCGGAAGTATTTGATCTCACTGGAAC 539 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| | Sbjct 489 TTGGGCCATGCTTGCAGCATTGGGTGCTCTAATCCCAGAAGTATTTGATCTCACCGGAGC 548 Query 540 TTTCCATTTTGCTGAACCCGTATGGTGGCGAGTCGGTTACTCCAAGCTTCAGGGAGAGAC 599 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 549 TTTCCATTTTGCTGAACCCGTATGGTGGCGAGTCGGTTACTCGAAGCTTCAGGGAGAGAC 608 Query 600 ATTGGAGTACCTCGGCATCCCAGGGCTTCATGTAGCTGGAAGCCAAGGTGTCATTGTAAT 659 |||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| Sbjct 609 ATTGGACTACCTCGGCATTCCAGGGCTTCACGTAGCTGGAAGCCAAGGTGTCATCGTAAT 668 Query 660 TGCCATTTGCCAAGTACTCTTGATGGTAGGACCGGAATACGCAAGATACTGTGGCATTGA 719 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 669 TGCCATTTGCCAAGTACTCTTGATGGTAGGACCGGAATATGCAAGATACTGTGGCATTGA 728 Query 720 GGCCTTAGAGCCACTGGGAATATACTTGCCAGGAGACATTAACTATCCTGGAGGGACGCT 779 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 729 GGCCTTAGAGCCACTGGGAATATACTTGCCAGGAGACATCAACTATCCTGGAGGGACGCT 788 Query 780 TTTTGATCCCTTGAATCTTTCCGAGGATCCTGTAGCTTTTGAAGATCTTAAGGTTAAAGA 839 ||||||||||||||| || || |||||||| ||||||||||||||||||||||||||||| Sbjct 789 TTTTGATCCCTTGAACCTCTCTGAGGATCCGGTAGCTTTTGAAGATCTTAAGGTTAAAGA 848 Query 840 GATTAAAAATGGACGATTGGCGATGGTCGCGTGGCTTGGATTTTATGCACAGGCTGCTTT 899 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| | Sbjct 849 GATTAAAAACGGACGATTGGCGATGGTCGCTTGGCTTGGATTTTATGCACAGGCTGCTGT 908 Query 900 CACTGGAAAAGGTCCTGTACAAAATCTTGTTGACCATGTCTCGGATCCATTACATAACAA 959 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 909 CACTGGAAAAGGTCCTGTACAAAATCTTGTTGACCATGTCTCTGATCCATTACATAACAA 968 Query 960 TCTGATTGCCATGCTTCAGACATGACAATGTGTGAATA 997 |||| ||||||||||||||||||||||||||||||||| Sbjct 969 TCTGCTTGCCATGCTTCAGACATGACAATGTGTGAATA 1006 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39266604510 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5