BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G76660.1 Length=1947 Score E Sequences producing significant alignments: (Bits) Value Ahg476825 jgi|Araly1|476825|fgenesh2_kg.2__1955__AT1G76660.1 2254 0.0 > Ahg476825 jgi|Araly1|476825|fgenesh2_kg.2__1955__AT1G76660.1 Length=1849 Score = 2254 bits (1220), Expect = 0.0 Identities = 1476/1590 (93%), Gaps = 55/1590 (3%) Strand=Plus/Plus Query 384 AGCAGGATCAGAGGAAAAGGTGGGGAGGTTGTTTAGGAGTGTTCTCTTGTTTCAAGTCAC 443 ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 283 AGCAGGAACAGAGGAAAAGGTGGGGAGGTTGTTTAGGAGTGTTCTCTTGTCTCAAGTCAC 342 Query 444 AAAAAGGTGGAAAAAGAATTGTACCTGCTTCTCGCATTCCTGAAGGTGGCAATGTCTCAG 503 ||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| | Sbjct 343 AAAAAGGTGGAAAAAGAATTGTACCAGCATCTCGCATTCCTGAAGGCGGCAATGTCTCGG 402 Query 504 CTTCACAACCTAATGGAGCTCATCAAGCTGGTGTCTTAAATAATCAAGCTGCAGGAGGGA 563 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 403 CCTCACAACCTAATGGAGCTCATCAAGCTGGTGTCTTAAATAATCAAGCTGCAGGAGGGA 462 Query 564 TTAATCTATCACTAT-TGGCTCCACCTTCCTCTCCTGCTTCCTTCACCAATTCAGCTCTT 622 |||||||||| || | ||||||||||||||||||||||||||||||||||||| |||||| Sbjct 463 TTAATCTATCTCT-TCTGGCTCCACCTTCCTCTCCTGCTTCCTTCACCAATTCGGCTCTT 521 Query 623 CCTTCAACTACTCAGTCTCCAAACTGCTACTTATCTCTGGCTGCAAATTCACCGGGAGGT 682 |||||||| ||||||| ||||||||||||||||| |||||||| ||||||||||||||| Sbjct 522 CCTTCAACCGCTCAGTCACCAAACTGCTACTTATCGCTGGCTGCGAATTCACCGGGAGGT 581 Query 683 CCTTCGTCGAGTATGTATGCCACTGGACCATATGCTCATGAAACCCAATTAGTCTCACCG 742 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 582 CCTTCGTCGAGTATGTATGCCACTGGACCATATGCTCATGAAACCCAATTGGTCTCACCG 641 Query 743 CCTGTTTTCTCTACTTTCACCACCGAGCCATCGACTGCTCCTTTCACTCCTCCTCCAGAG 802 |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 642 CCTGTTTTCTCTACATTCACCACCGAGCCTTCGACTGCTCCTTTCACTCCTCCTCCAGAG 701 Query 803 CTTGCACGTCTGACTGCCCCTTCTTCACCTGATGTACCTTATGCTCGTTTCTTGACTTCC 862 |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 702 CTTGCACGCCTGACTGCTCCTTCTTCACCTGATGTACCTTATGCTCGTTTCTTGACTTCC 761 Query 863 TCCATGGATCTCAAGAACTCTGGTAAAGGTCATTACAA----T-----GATCTTCAAGCT 913 |||||||||||||||||||||||||||||||||||||| | || ||||||||| Sbjct 762 TCCATGGATCTCAAGAACTCTGGTAAAGGTCATTACAATGTTTCAAGCGACCTTCAAGCT 821 Query 914 ACTTATTCTCTTTATCCCGGAAGTCCAGCCAGTGCTCTTAGATCACCAATCTCTCGGGCT 973 || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 822 ACATATTCTCTTTATCCCGGAAGTCCAGCCAGCGCTCTTAGATCACCAATCTCTCGGGCT 881 Query 974 TCGGGAGATGGGTTATTGTCGCCTCAAAATGGTAAATGCTCAAGGAGTGATTCTGGCAAC 1033 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 882 TCGGGAGATGGGTTATTATCGCCTCAAAATGGTAAATGCTCAAGGAGTGATTCTGGCAAC 941 Query 1034 ACATTCGGGTATGACACAAATGGAGTCTCAACACCTTTGCAGGAGTCAAACTTCTTCTGT 1093 || || ||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 942 ACCTTTGGGTATGACACAAATGGAGTCTCGACACCTTTGCAGGAGTCAAACTTCTTCTGT 1001 Query 1094 CCTGAAACTTTTGCCAAGTTTTACCTGGATCACGACCCTTCAGTTCCTCAAAACGGTGGA 1153 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 1002 CCTGAAACTTTTGCCAAGTTTTACCTGGATCACGATCCTTCGGTTCCTCAAAACGGTGGA 1061 Query 1154 AGATTAAGCGTGTCGAAGGATTCAGATGTGTATCCTACAAATGGATATGGAAACGGGAAC 1213 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1062 AGATTAAGCGTGTCCAAGGATTCAGATGTGTATCCTACAAATGGATATGGAAACGGGAAC 1121 Query 1214 CAGAATAGGCAGAACAGAAGTCCCAAGCAAGACATGGAGGAGTTAGAAGCTTACAGGGCG 1273 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1122 CAGAATAGGCAAAACAGAAGTCCCAAGCAAGACATGGAGGAGTTAGAAGCTTACAGAGCT 1181 Query 1274 TCCTTTGGTTTTAGTGCAGATGAAATCATCACAACTAGTCAGTATGTAGAGATCACTGAT 1333 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1182 TCCTTTGGGTTCAGTGCAGATGAAATCATCACAACTAGTCAGTATGTAGAGATCACTGAT 1241 Query 1334 GTGATGGATGGGTCTTTTAACACATCAGCTTACTCTCCAAGCGATGGACAAAAGCTTCTC 1393 |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1242 GTGATGGATGATTCTTTTAACACAGCAGCTTACTCTCCAAGCGATGGACAAAAGCTTCTT 1301 Query 1394 AGAAGAGAAGCAAATTTGCTGAGTCAAACAAGCCCCAAATCAGAAGCCGATCTTGATTCA 1453 ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1302 AGAAGAGAAGCAAATCTGCTGAGTCAAACAAGCCCCAAATCAGAAGCAGATCTTGATTCA 1361 Query 1454 CAAGTTGTAGACTTCCAATCACCAAAGTCATCAAATAGCTACAAAGATCACAAACAAAGA 1513 ||||||||||||||||| ||||||||| |||||||| |||||||||||||||| |||||| Sbjct 1362 CAAGTTGTAGACTTCCATTCACCAAAGGCATCAAATGGCTACAAAGATCACAAGCAAAGA 1421 Query 1514 AACCGGATCCATGCGGATGAAGAGGCTTTATTGTCGAGAGTGGGGTCTGTAAAAGGAAGC 1573 |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| Sbjct 1422 AACCGGATCCATGCGGATGAAGAGGCCTTACTGTCGAGAGTGGGGTCTGTAAAAGGAAGC 1481 Query 1574 AGAAGCTATCATATTTCAAGCTCTGATGCAGAGGTCGAGTACAGAAGAGGAAGAAGCTTA 1633 |||||||||| ||| |||||||| |||||||||||||| ||| ||||||||||||||||| Sbjct 1482 AGAAGCTATCCTATATCAAGCTCGGATGCAGAGGTCGAATACCGAAGAGGAAGAAGCTTA 1541 Query 1634 AGGGAAAGCAGAGAGAACAGACACAGGAAAGCCTGATCAAGAACAACAACAACAAGAAGA 1693 |||||||||||||||||||||||||||| ||||||||||||||||| ||| | Sbjct 1542 AGGGAAAGCAGAGAGAACAGACACAGGATAGCCTGATCAAGAACAA---------GAA-A 1591 Query 1694 AGAAAGCCTGATCTGTTCTTAAAGTCTTCTAAGGTCTAAAAAGT-T-------G-ATCTT 1744 | ||| | |||||||||| |||||||||| |||||||||| | | ||||| Sbjct 1592 -GCCAGC-T---CTGTTCTTAAGGTCTTCTAAGTTCTAAAAAGTATTAAATATGGATCTT 1646 Query 1745 GTGATGCTAACTCTTGAGATAAGAAGTCTAGTTTTT---AA-Gtatatatagatatatat 1800 |||||||||||||| |||||| || |||||||||| || |||||||||||||||||| Sbjct 1647 GTGATGCTAACTCTCAAGATAATAA-TCTAGTTTTTTTTAAAGTATATATAGATATATAT 1705 Query 1801 a-a-atataA-T-TA-----CAGATGGTTTTTTAGTAGAATGATGTTATATATAAGAAGA 1851 | | |||||| | || |||||||||||| ||||||||| | | |||||||||| || Sbjct 1706 ATATATATAAATATAAATTACAGATGGTTTTT-AGTAGAATG-T-T-ATATATAAGA-GA 1760 Query 1852 GAGCAAGGGTGAGAAAGTGAATGCTTGTTTTTTAGTTTGACATGGCTTTTTTGTAAGACC 1911 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1761 GAGCAAGGGTGAGAAAGTGAATGCTTGTTTTT-AGTTTGACATGGCTTTTTTGTAAGACC 1819 Query 1912 CCATCTTTTATCTAATTGCACCAATCTGTT 1941 |||||||||||||||||||||||||||||| Sbjct 1820 CCATCTTTTATCTAATTGCACCAATCTGTT 1849 Score = 148 bits (80), Expect = 1e-34 Identities = 86/89 (97%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 1 ATTCTGATTAAAATAGAAATGCTTTTTCCTTGGTAAGGATCATCTTTTCATGCCGATTGC 60 ||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||| Sbjct 1 ATTCTGATTAAAATAGAAATGCTTTTTCCATCGTAAGGATCATCTTTCCATGCCGATTGC 60 Query 61 ATCAGTGCAGATTTCCTTATTTACTCTTT 89 ||||||||||||||||||||||||||||| Sbjct 61 ATCAGTGCAGATTTCCTTATTTACTCTTT 89 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73171360645 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5