BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76670.1
Length=1666
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476826 jgi|Araly1|476826|fgenesh2_kg.2__1956__AT1G76670.1 2316 0.0
Ahg921075 jgi|Araly1|921075|scaffold_102356.1 1131 0.0
> Ahg476826 jgi|Araly1|476826|fgenesh2_kg.2__1956__AT1G76670.1
Length=1615
Score = 2316 bits (1254), Expect = 0.0
Identities = 1529/1654 (92%), Gaps = 50/1654 (3%)
Strand=Plus/Plus
Query 24 AAGGAAAGCATCAATGGTGGGAGAAGAAGCTTGCTTGTGATAATATATTCAGCTACGTCG 83
||| |||||||||||||| | |||||||||||||||||| | |||||||||| ||||||
Sbjct 1 AAGAAAAGCATCAATGGT--G-GAAGAAGCTTGCTTGTGAGATTATATTCAGCGACGTCG 57
Query 84 AGTGAAGAACCAGTGAAGCATAAGTAGCAGAGAC--AGAGAG-AGATACGTGAGTGTGTG 140
||||||||| ||||||| ||||||||| |||||| |||||| |||||||| |||||||
Sbjct 58 AGTGAAGAAGCAGTGAACCATAAGTAGAAGAGACAGAGAGAGAAGATACGT--GTGTGTG 115
Query 141 TCTGTGTTTTTCGCTTTTTGGCTTTCTTCGCTGATTCCACGAACGGCGTGAATCGACTTT 200
| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 116 TGTGTG-TTTTCGCTTTTTGGCTTTCTTCGCCGATTCCACGAACGGCGTGAATCGACTTT 174
Query 201 TCTCCAGATCTCATCTCTTTCAGTGTTTGATTCTGTCAAAATCTGCAAGCGAATCGAGAT 260
||| ||||||||| || ||| |||||||||||| ||||||||||||
Sbjct 175 TCTGCAGATCTCA------TC----------TCT-TCAAAATCTGCAGGCGAATCGAGAT 217
Query 261 TTCTCAGATCTCGTTTTCGCTTGCACGAGA-TTCAGATCTGATAGTGTCGGTGTTCAATT 319
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 218 TTGTCAGATCTCGTTTTCGCTTGCACGAGATTTCAGATCTGATAGTGTCGGTGTTCAATT 277
Query 320 TTC-TCAAATCCAAATGGAGAAACCGGAGAGCGAGAAGAAATCGGCGGTGTCTGATGTCG 378
||| || ||| ||||||||||||||||||||||||||||||||||| || || || ||||
Sbjct 278 TTCTTC-AATTCAAATGGAGAAACCGGAGAGCGAGAAGAAATCGGCTGTTTCCGACGTCG 336
Query 379 GTGCATGGGCTATGAATGTAATCAGCTCCGTTGGAATCATCATGGCTAATAAACAGCTCA 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 GTGCATGGGCTATGAATGTAATCAGCTCCGTTGGAATCATCATGGCTAATAAACAGCTCA 396
Query 439 TGTCTTCCTCTGGTTTCGGTTTTGGCTTTGCTACAACG-TTAACGGGATTTCACTTTGCA 497
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||
Sbjct 397 TGTCTTCCTCTGGTTTCGGTTTTGGCTTTGCTACAACTCTTA-CGGGATTTCACTTCGCC 455
Query 498 TTCACTGCTCTTGTTGGTATGGTGTCAAACGCAACGGGACTATCAGCTTCTAAGCATGTT 557
||||||| |||||||||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct 456 GTCACTGCACTTGTTGGTATGGTTTCAAACGCTTCGGGATTATCAGCTTCTAAGCATGTT 515
Query 558 CCTCTTTGGGAGCTTCTCTGGTTCTCAATTGTTGCTAATATCTCTATCGCTGCTATGAAC 617
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 516 CCTCTTTGGGAGCTTCTCTGGTTCTCAATTGTTGCTAATATCTCCATTGCTGCTATGAAC 575
Query 618 TTTAGTCTTATGCTCAACTCTGTTGGCTTCTATCAGATTTCGAAATTGAGCATGATTCCG 677
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 576 TTCAGCCTTATGCTCAACTCTGTTGGCTTCTATCAGATTTCGAAATTGAGCATGATTCCG 635
Query 678 GTGGTATGCGTGTTGGAATGGATTCTACATAGCAAGCATTATTGTAAAGAAGTGAAAGCT 737
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 636 GTGGTATGCGTGTTGGAATGGATTATACATAGCAAGCATTACTGTAAAGAAGTGAAAGCT 695
Query 738 TCTGTAATGGTTGTGGTTATCGGTGTTGGGATTTGTACTGTGACTGATGTCAAAGTTAAT 797
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 696 TCTGTAATGGTTGTGGTTATTGGTGTTGGGATTTGTACTGTGACTGATGTCAAAGTTAAT 755
Query 798 GCCAAAGGTTTCATTTGTGCATGCACTGCCGTTTTCTCCACTTCTCTGCAGCAGATTTCT 857
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 756 GCTAAAGGTTTCATTTGTGCATGCACTGCCGTTTTCTCCACTTCTCTCCAGCAGATTTCT 815
Query 858 ATAGGCTCTCTGCAGAAGAAGTACTCAGTAGGATCCTTTGAATTGCTGAGCAAAACTGCA 917
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 816 ATAGGCTCTCTGCAGAAGAAATACTCAGTAGGATCTTTTGAATTGCTGAGCAAAACAGCC 875
Query 918 CCAATCCAAGCCATTTCACTTCTCATCTGTGGCCCCTTTGTTGACTATTTGTTGAGCGGC 977
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 876 CCAATCCAAGCCATTTCACTTCTCATCTTTGGCCCCTTTGTTGACTATTTCTTGAGCGGC 935
Query 978 AAATTCATATCTACTTACCAGATGACTTATGGTGCCATCTTCTGCATTCTTCTCTCCTGT 1037
|||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||
Sbjct 936 AAATTCATATCTACTTACAAGATGACTTACGGTGCCATCTTCTGCATTCTTCTTTCCTGC 995
Query 1038 GCATTAGCCGTTTTCTGTAACATAAGCCAATATCTCTGCATCGGAAGATTCTCAGCGACA 1097
||||| || ||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 996 GCATTGGCTGTTTTCTGTAACATAAGTCAATATCTCTGCATTGGAAGATTCTCAGCGACA 1055
Query 1098 TCTTTCCAAGTTCTAGGCCACATGAAAACAGTATGCGTCCTCACATTAGGATGGCTTCTC 1157
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1056 TCTTTCCAAGTTCTAGGCCACATGAAAACAGTATGCGTCCTCACATTAGGTTGGCTTCTC 1115
Query 1158 TTTGATTCCGAGATGACATTCAAGAACATCGCCGGGATGGCCATAGCCATTGTTGGAATG 1217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1116 TTTGATTCCGAGATGACATTCAAGAACATCGCCGGGATGGCCATAGCCATTGTTGGAATG 1175
Query 1218 GTGATCTATAGTTGGGCTGTTGATATAGAGAAACAGAGGAACGCAAAGTCAACGCCACAC 1277
||||||||||||||||| |||||| |||||||||||||||| ||||||| ||||||||||
Sbjct 1176 GTGATCTATAGTTGGGCAGTTGATCTAGAGAAACAGAGGAATGCAAAGTTAACGCCACAC 1235
Query 1278 GGCAAACACAGTATGACCGAAGATGAGATTAAGCTACTCAAAGAAGGAGTTGAGCATATC 1337
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1236 GGCAAAAACAGTATGACCGAAGATGAGATTAAGCTACTCAAGGAAGGAGTTGAGCATATC 1295
Query 1338 GACTTGAAAGACGTTGAACTCGGTGACACTAAACCATAAGTGG-GTGCTTATAACCCATT 1396
||||||||||||||||| |||||||||||||||||||||| || ||||||||| ||||||
Sbjct 1296 GACTTGAAAGACGTTGAGCTCGGTGACACTAAACCATAAG-GGTGTGCTTATA-CCCATT 1353
Query 1397 TGAAATT-ACTCGTCGCTACTGATTCGAATTCTTTATACAAATATTTCCTTTGTGTGCCA 1455
||||||| || ||||| | ||||| |||||||||||||||||||||||||||||||||
Sbjct 1354 TGAAATTTACACGTCGAAAGTGATTTTAATTCTTTATACAAATATTTCCTTTGTGTGCCA 1413
Query 1456 TTTACTTTGTTCTTTCCACTTCCTA-TATATGTCTTAGAACATTTTGGGCTTTTCAGAAA 1514
||||||| ||||||||||| | | || |||||| ||| |||||||||||| |||||||
Sbjct 1414 TTTACTT-GTTCTTTCCACCACATTCTACATGTCTGAGACCATTTTGGGCTTCTCAGAAA 1472
Query 1515 GCCCATAAATCCTTCTTTGCTTGAGAAGAAGGCCCGTCCTTGAATAGT-AAGTGTCCTAT 1573
|||||||||||||||||||||| || ||||||||| |||||||||||| || ||||||||
Sbjct 1473 GCCCATAAATCCTTCTTTGCTTAAGGAGAAGGCCCATCCTTGAATAGTGAA-TGTCCTAT 1531
Query 1574 ATAGTAAAGTAA-ACAGAAATGTCAACTGAAGCATGTGATTTTATTCATTTGATTATATA 1632
||||||| |||| |||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1532 ATAGTAA-GTAATACAGAAATGTCAACTGAAGCATGTGATTTTATTCATTT--TC-TATA 1587
Query 1633 TGTCTATGAACTACCAAAACAGATCTCTTGTATC 1666
|| | | ||||||||||||||||||||||||
Sbjct 1588 TG---A--A-CTACCAAAACAGATCTCTTGTATC 1615
> Ahg921075 jgi|Araly1|921075|scaffold_102356.1
Length=1087
Score = 1131 bits (612), Expect = 0.0
Identities = 908/1050 (86%), Gaps = 23/1050 (2%)
Strand=Plus/Plus
Query 313 TTCAATTTTC-TCAAATCCAAATGGAGAA-ACCGGAGAGCGAGAAGAA---ATCGGCGGT 367
||||| |||| | |||||||||||||||| | | |||| ||||||||| |||||||||
Sbjct 1 TTCAA-TTTCGTAAAATCCAAATGGAGAAGA-CAGAGAACGAGAAGAAGCCATCGGCGGT 58
Query 368 GTCTGATGTCGGTGCATGGGCTATGAATGTAATC-AGCTCCGTTGGAATCATCATGGCTA 426
||||| ||||| |||||||||||||| |||| | ||||||||||| ||||||||||| |
Sbjct 59 ATCTGACGTCGGAGCATGGGCTATGAACGTAA-CGAGCTCCGTTGGGATCATCATGGCGA 117
Query 427 ATAAACAGCTCATGTCTTCCTCTGGTTTCGGTTTTGGCTTTGCTACAACGT-TAACGGGA 485
||||||| || ||||| || ||||||||||| ||| |||| || ||||| | | ||||||
Sbjct 118 ATAAACAACTAATGTCATCATCTGGTTTCGGCTTTAGCTTCGCGACAAC-TCTCACGGGA 176
Query 486 TTTCACTTTGCAT-TCACTGCTCTTGTTGGTATGGTGTCAAACGCAACGGGACTATCAGC 544
||||||||||| | |||||||||| |||||||||||||||||||| || || |||| ||
Sbjct 177 TTTCACTTTGC-TCTCACTGCTCTCGTTGGTATGGTGTCAAACGCGACTGGTTTATCTGC 235
Query 545 TTCTAAGCATGTTCCTCTTTGGGAGCTTCTCTGGTTCTCAATTGTTGCTAATATCTCTAT 604
||||||||||||||||||||||||||||| ||||||||| | |||||||||||||| ||
Sbjct 236 ATCTAAGCATGTTCCTCTTTGGGAGCTTCTTTGGTTCTCACTCGTTGCTAATATCTCAAT 295
Query 605 CGCTGCTATGAACTTTAGTCTTATGCTCAACTCTGTTGGCTTCTATCAGATTTCGAAATT 664
|||||||||||| |||||||| ||| | ||||||||||| ||||| ||||||||||||||
Sbjct 296 CGCTGCTATGAATTTTAGTCTCATGTTGAACTCTGTTGGTTTCTACCAGATTTCGAAATT 355
Query 665 GAGCATGATTCCGGTGGTATGCGTGTTGGAATGGATTCTACATAGCAAGCATTA-TTGTA 723
||||||||||||||| || |||||| |||||||| | |||||||| |||||||| | | |
Sbjct 356 GAGCATGATTCCGGTTGTTTGCGTGATGGAATGGGTACTACATAGTAAGCATTACTCG-A 414
Query 724 AAGAAGTGAAAGCTTCTGTAATGGTTGTGGTTATCGGTGTTGGGATTTGTACTGTGACTG 783
||||||||| || ||||| |||||||||||| | || ||||||||||||||||||||||
Sbjct 415 GAGAAGTGAAGGCATCTGTCATGGTTGTGGTTGTAGGAGTTGGGATTTGTACTGTGACTG 474
Query 784 ATGTCAAAGTTAATGCCAAAGGTTTCATTTGTGCATGCACTGCCGTTTTCTCCACTTCTC 843
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 475 ATGTCAAAGTTAATGCCAAAGGTTTCATTTGTGCTTGCACTGCCGTTTTCTCCACTTCTC 534
Query 844 TGCAGCAGATTTCTATAGGCTCTCTGCAGAAGAAGTACTCAGTAGGATCCTTTGAATTGC 903
| |||||||| || ||||| || ||||||||||| |||||| | ||||| ||||| ||||
Sbjct 535 TCCAGCAGATCTCAATAGGTTCACTGCAGAAGAAATACTCAATCGGATCTTTTGAGTTGC 594
Query 904 TGAGCAAAACTGCACCAATCCAAGCCATTTCACTTCTCATCTGTGGCCCCTTTGTTGACT 963
|||||||||| || |||||||||||||||||||| ||||||| ||| || ||||||||||
Sbjct 595 TGAGCAAAACAGCTCCAATCCAAGCCATTTCACTCCTCATCTTTGGTCCATTTGTTGACT 654
Query 964 ATTTGTTGAGCGGCAAATTCATATCTACTTACCAGATGACTTATGGTGCCATCTTCTGCA 1023
|||| ||||| |||| |||||| ||||||||| ||||||||||||| || || || ||||
Sbjct 655 ATTTCTTGAGTGGCAGATTCATTTCTACTTACAAGATGACTTATGGCGCAATGTTATGCA 714
Query 1024 TTCTTCTCTCCTGTGCATTAGCCGTTTTCTGTAACATAAGCCAATATCTCTGCATCGGAA 1083
||||||||||||| ||| | || |||||||| ||||| |||||||||||||||||||| |
Sbjct 715 TTCTTCTCTCCTGCGCACTGGCGGTTTTCTGCAACATTAGCCAATATCTCTGCATCGGCA 774
Query 1084 GATTCTCAGCGACATCTTTCCAAGTTCTAGGCCACATGAAAACAGTATGCGTCCTCACAT 1143
||||||| || || || ||||||||||| ||||||||||||||||| || ||| | |||
Sbjct 775 GATTCTCCGCTACTTCCTTCCAAGTTCTTGGCCACATGAAAACAGTCTGTGTCTTAACAC 834
Query 1144 TAGGATGGCTTCTCTTTGATTCCGAGATGACATTCAAGAACATCGCCGGGATGGCCATAG 1203
| ||||||||| ||||||||||||||||||||||||||||||| || ||||||| | |||
Sbjct 835 TGGGATGGCTTATCTTTGATTCCGAGATGACATTCAAGAACATAGCAGGGATGGTCTTAG 894
Query 1204 CCATTGTTGGAATGGTGATCTATAGTTGGGCTGTTGA-TATAGAGAAACAGAGGAA--CG 1260
| | || ||||||||||| || |||||||| || || | ||||||||||||| || ||
Sbjct 895 CTGTGGTGGGAATGGTGATATACAGTTGGGCAGTCGAGT-TAGAGAAACAGAGAAAGTCG 953
Query 1261 CAAAGTCAACGCCACACGGCAAACACAGTATGACCGAAGATGAGATTAAGCTACTCAAAG 1320
||||| | | || || || |||||||||||||| |||||||||||||| || |||||||
Sbjct 954 -AAAGTGA-CACCGCATGGTAAACACAGTATGACAGAAGATGAGATTAAACTTCTCAAAG 1011
Query 1321 AAGG-AGTTGAGCATATCGACTTGAAAGAC 1349
|||| | | || ||||| || |||||||||
Sbjct 1012 AAGGTA-TAGAACATATGGATTTGAAAGAC 1040
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62468001800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5