BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76880.1
Length=2200
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927082 jgi|Araly1|927082|scaffold_202643.1 2425 0.0
Ahg473497 jgi|Araly1|473497|fgenesh2_kg.1__3451__AT1G33240.1 172 8e-42
> Ahg927082 jgi|Araly1|927082|scaffold_202643.1
Length=1837
Score = 2425 bits (1313), Expect = 0.0
Identities = 1704/1876 (91%), Gaps = 93/1876 (5%)
Strand=Plus/Plus
Query 90 AAACGATGATGCAACTGGGTGGTGGTACTCCGACCACTACAGCGGCGGCTACAACCGTCA 149
|||||||||||||||| | |||||||||||||||||||||||||||||||| | |
Sbjct 16 AAACGATGATGCAACT--G-GGTGGTACTCCGACCACTACAGCGGCGGCTAC-A-----A 66
Query 150 CAACTGCTACAGCACCACCGCCACAATCAAACAACAACGATTCAGCGGCAACAGAAGCAG 209
| | ||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 67 C--C-GCTACAG---CACCGCCACAATCAAACAACAACGATTCAGCGGCTACAGAAGCAG 120
Query 210 CGGCAGCAGCGGTTGGGGCGTTTGAGGTGTCGGAAGAGATGCACGACCGTGGGTTTGGAG 269
||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 121 CGGCAGCAGCGGTAGGGGCGTTTGAGGTGTCGGAAGAGATGAACGACCGTGGTTTTGGAG 180
Query 270 GAAATCGTTGGCCGCGGCAGGAAACGCTAGCGTTGTTGAAAATACGATCTGACATGGGAA 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAAATCGTTGGCCGCGGCAGGAAACGCTAGCGTTGTTGAAAATACGATCTGACATGGGAA 240
Query 330 TAGCGTTTCGAGACGCTAGCGTTAAAGGTCCCTTATGGGAAGAGGTTTCTAGGAAAATGG 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TAGCGTTTCGAGACGCTAGCGTTAAAGGTCCCTTATGGGAAGAGGTTTCTAGGAAAATGG 300
Query 390 CGGAGCATGGTTACATAAGAAACGCAAAGAAATGCAAAGAGAAATTCGAGAACGTTTACA 449
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 301 CGGAGCTTGGTTACATAAGAAACGCAAAGAAATGCAAAGAGAAATTCGAAAACGTTTACA 360
Query 450 AATACCACAAACGAACCAAAGAAGGTCGTACCGGAAAATCCGAAGGCAAAACTTATCGCT 509
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 361 AATACCACAAACGAACCAAAGAAGGCCGTACCGGAAAATCCGAAGGCAAAACTTATCGCT 420
Query 510 TCTTTGATCAATTAGAAGCTCTCGAGTCTCAATCTACAACCTCACTCCACCATCATcaac 569
|||||||||||||||||||||||||||||||||| || || ||||| |||||||| |
Sbjct 421 TCTTTGATCAATTAGAAGCTCTCGAGTCTCAATCAACCACATCACT---CCATCATC--C 475
Query 570 aacaaacgcctcttcgaccacagcaaaacaacaacaacaacaacaacaacaacaacaaca 629
||| || | ||| | || || || | | | | | ||| |||||| | |
Sbjct 476 -GCAACCG-C-AATCG-CAACCGC--GAC--C--C--C--C--C--CAA-AACAAC-A-A 514
Query 630 GCTCCATATTTTCAACTCCTCCTCCGGTAACGACAGTTATG-C--C----G---AC---- 675
|||||||||||||||||||||||||||||||||||||||| | | | ||
Sbjct 515 -CTCCATATTTTCAACTCCTCCTCCGGTAACGACAGTTATGCCGGCGGTAGCAAACATGA 573
Query 676 G----CTTCCTTCTTCATCAATTCCTCCGTATACTCAGCAGATTAATGTACCTTCGTTTC 731
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 574 GTACACTTCCTTCTTCATCAATTCCTCCGTATACTCAGCAGATTAATGTACCTTCGTTTC 633
Query 732 CAAACATCTCCGGTGATTTTCTATCGGATAATTCTACATCGTCTTCGTCTTCTTATTCGA 791
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 634 CAAACATCTCCGGTGATTTTCTATCGGATAATTCGACATCGTCTTCTTCTTCTTATTCGA 693
Query 792 CTTCTTCTGACATGGAGATGGGTGGTGGAACTGCGACTACAAGGAAGAAAAGGAAGAGGA 851
|||||||||| |||||||| ||||| |||||| |||||||||||||||||||||||||||
Sbjct 694 CTTCTTCTGATATGGAGATCGGTGGGGGAACTACGACTACAAGGAAGAAAAGGAAGAGGA 753
Query 852 AATGGAAGGTGTTTTTCGAGCGGTTGATGAAACAAGTAGTTGATAAACAGGAAGAGCTTC 911
||||||||| ||||||||||||||||||||||||||| ||||||||||| || ||||| |
Sbjct 754 AATGGAAGGAGTTTTTCGAGCGGTTGATGAAACAAGTTGTTGATAAACAAGAGGAGCTCC 813
Query 912 AACGCAAATTCTTGGAAGCTGTTGAAAAGCGAGAACACGAGAGATTGGTTAGAGAAGAGT 971
||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 814 AACGCAAGTTCTTGGAAGCTGTTGAAAAGCGAGAACATGAGAGATTGGTTAGAGAAGAAT 873
Query 972 CTTGGAGAGTTCAAGAGATTGCCAGAATCAACCGCGAGCACGAGATCTTAGCTCAAGAAC 1031
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 874 CTTGGAGAGTTCAAGAGATTGCAAGAATCAACCGCGAGCACGAGATCTTAGCTCAAGAAC 933
Query 1032 GCTCTATGTCCGCTGCAAAAGACGCTGCTGTTATGGCCTTTCTTCAAAAACTGTCAGAGA 1091
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 934 GCTCTATGTCCGCCGCTAAAGACGCTGCTGTTATGGCCTTTCTTCAAAAACTGTCAGAAA 993
Query 1092 AACAACCGAATCAGCC-ACAACCG--CAGCCTCAGCCGCAACAAGTTCGACCATC-AATG 1147
|||||||||||||||| || ||| || || || |||||||||||||||||| | ||||
Sbjct 994 AACAACCGAATCAGCCAACCGCCGCACAACCGCAACCGCAACAAGTTCGACCA-CAAATG 1052
Query 1148 CAGCT---TAATAACAACAATCAGCAGCAACCGCCTCAACGGTCTCCTCCACCGCAACCT 1204
||||| |||||||||||||||||||||| ||||||||| | | ||||||||| ||||
Sbjct 1053 CAGCTGAATAATAACAACAATCAGCAGCAAACGCCTCAACCG--T-CTCCACCGCCACCT 1109
Query 1205 CCTGCTCCGCTTCCGCAGCCAATTCAAGCGGTTGTGTCGACGT-TAGACACAACGAAAAC 1263
||| |||||||||||||| |||||||||| |||||| | || | ||||||| ||||||||
Sbjct 1110 CCTCCTCCGCTTCCGCAGGCAATTCAAGCCGTTGTGCCAAC-TCTAGACACTACGAAAAC 1168
Query 1264 GGACAATGGTGGTGATCAGAATATGACTCCTGCAGCTTCAGCGAGCTCGTCGCGGTGGCC 1323
|||||| |||||||||||||||||| | ||||||||||||| || || ||||||||
Sbjct 1169 GGACAA---CGGTGATCAGAATATGACT-C--CAGCTTCAGCGAGTTCCTCCCGGTGGCC 1222
Query 1324 GAAAGTGGAGATAGAAGCATTGATAAAGCTGAGGACGAATCTTGATTCGAAATATCAAGA 1383
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1223 CAAAGTGGAGATAGAAGCATTGATAAAGCTGAGGACGAATCTTGATTCAAAATATCAAGA 1282
Query 1384 AAACGGACCAAAAGGACCATTGTGGGAAGAGATATCAGCGGGAATGAGAAGGTTAGGATT 1443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1283 AAACGGACCAAAAGGACCATTGTGGGAAGAGATATCAGCGGGAATGAGAAGGTTAGGATT 1342
Query 1444 CAACAGGAACTCAAAGAGATGCAAAGAGAAATGGGAAAACATAAACAAATACTTCAAGAA 1503
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1343 CAACAGGAACTCAAAGAGATGCAAAGAGAAATGGGAGAACATAAACAAATACTTCAAGAA 1402
Query 1504 AGTCAAAGAGAGCAACAAGAAACGTCCCGAAGATTCCAAGACTTGCCCTTACTTTCACCA 1563
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1403 AGTCAAAGAGAGCAACAAGAAACGACCCGAAGATTCCAAGACTTGTCCTTACTTTCACCA 1462
Query 1564 GCTTGATGCTTTATATAGAGAGAGGAACAAATTCCACAGCAACAAC---AACATTGCAGC 1620
||| |||||||| ||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1463 GCTCGATGCTTTGTATAGAGAGAGGAACAAATTCCACAGCAACAACGTCAACATCGCAGC 1522
Query 1621 T--T-CTTCTTCATCTTCCGGTCTTGTTAAACCGGATAATTCTGTTCCCTTGATGGTCCA 1677
| | |||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1523 TGCTTCTTCTTCAGCTTCCGGTCTTGTTAAACCGGATAATTCTGTTCCGTTGATGGTCCA 1582
Query 1678 ACCAGAGCAGCAATGGCCTCCGGCTGTAACGACTGCGACAACTACT-CC-C-G---CAGC 1731
|||||||||||||||||||||||| ||||| || || |||||||| || | | ||||
Sbjct 1583 ACCAGAGCAGCAATGGCCTCCGGCAGTAACAACGGCAACAACTACGGCCGCAGTTGCAGC 1642
Query 1732 GGCTCAGCCTGATCAGCAATC-TCAGCCGTCGGAGCAGAACTTtgatgatgaagaaggta 1790
|||||||||||||||||| || |||||||||||| || |||||||| |||||||||||||
Sbjct 1643 GGCTCAGCCTGATCAGCA-TCCTCAGCCGTCGGATCAAAACTTTGACGATGAAGAAGGTA 1701
Query 1791 cagatgaagagtacgacgatgaagatgaggaagaggagaatgaagaagaggaaggAGGTG 1850
|||||||||| |||||||||| ||| ||||| ||||||||||||||||||||||||||||
Sbjct 1702 CAGATGAAGAATACGACGATGGAGAAGAGGACGAGGAGAATGAAGAAGAGGAAGGAGGTG 1761
Query 1851 AGTTCGAGCTTGTGCCTAGCAATAACAACAACAACAAGACGACGAATAATCTGTAATGAT 1910
|||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1762 AGTTTGAGCTTGTGCCTAGCAACAATAACAACAACAAGACGACGAATAATCTGTAATGAT 1821
Query 1911 GATGATTCGAGTTCGA 1926
|||||||| |||||||
Sbjct 1822 GATGATTCCAGTTCGA 1837
> Ahg473497 jgi|Araly1|473497|fgenesh2_kg.1__3451__AT1G33240.1
Length=2568
Score = 172 bits (93), Expect = 8e-42
Identities = 147/172 (85%), Gaps = 7/172 (4%)
Strand=Plus/Plus
Query 1406 TGGGAAGAGATATCAGCGGGAATG-AGAAGGTTAGGATTCAACAGGAACTCAAAGAGATG 1464
||||||||||| ||| || |||| || || | |||| |||||| ||| | ||||||||
Sbjct 1586 TGGGAAGAGATCTCAACGTCAATGAAG-AGAATGGGATACAACAGAAACGCTAAGAGATG 1644
Query 1465 CAAAGAGAAATGGGAAAACATAAACAAATACTTCAAGAAAGTCAAAGAGAGCAACAAGAA 1524
||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||
Sbjct 1645 TAAAGAGAAATGGGAAAACATAAACAAATACTACAAGAAAGTTAAAGAAAGCAACAAGAA 1704
Query 1525 ACGTCC-CGAAGATTCCAAGACTTGCCCTTACTTTCACCAG-CTTGATGCTT 1574
|||||| | ||||| | |||||||| ||||||||||||| | |||||| |||
Sbjct 1705 ACGTCCTC-AAGATGCTAAGACTTGTCCTTACTTTCACC-GTCTTGAT-CTT 1753
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82808192630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5