BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G76900.1 Length=1609 Score E Sequences producing significant alignments: (Bits) Value Ahg476847 jgi|Araly1|476847|fgenesh2_kg.2__1977__AT1G76900.2 2368 0.0 > Ahg476847 jgi|Araly1|476847|fgenesh2_kg.2__1977__AT1G76900.2 Length=1768 Score = 2368 bits (1282), Expect = 0.0 Identities = 1476/1570 (94%), Gaps = 12/1570 (1%) Strand=Plus/Plus Query 48 TGTAACCTTTAGAGAGAGAAAAACAAATGTCGTTCCGTAGCATAGTTCGTGATGTGAGAG 107 ||||||||| ||||||||||| | ||||||||||||| |||||||||||||||||||||| Sbjct 175 TGTAACCTTGAGAGAGAGAAAGA-AAATGTCGTTCCGCAGCATAGTTCGTGATGTGAGAG 233 Query 108 ATAGTATAGGAAGTCTATCGAGGCGTAGTTTCGACTTTAAGTTAAGCAGCTTGAACAAAG 167 | ||||| |||||||| |||||||||||||||||||||||| |||||||| || |||||| Sbjct 234 ACAGTATTGGAAGTCTGTCGAGGCGTAGTTTCGACTTTAAGCTAAGCAGCATGCACAAAG 293 Query 168 AAGGTGGTAAATCCCGTGGTTCGGTTCAAGATTCTCATGAGGAACAACTTGTAGTAACGA 227 ||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 294 AAGGTGGGAAATCTCGTGGTTCGGTTCAAGATTCTCACGAGGAACAACTTGTAGTAACGA 353 Query 228 TTCAAGAAACACCGTGGGCGAATCTACCTCCAGAGTTATTACGTGATGTGATCAAAAGAC 287 |||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 354 TTCAAGAAACCCCGTGGGCGAATCTACCTCCAGAGTTATTGCGCGATGTGATCAAAAGAC 413 Query 288 TTGAAGAGAGTGAAAGTGTGTGGCCTGCTCGTAGACATGTTGTTGCTTGTGCTTCTGTTT 347 |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 414 TTGAAGAGAGCGAAAGTGTGTGGCCTGCTCGTAGACATGTGGTTGCTTGTGCTTCTGTTT 473 Query 348 GCAGGTCATGGAGAGATATGTGTAAAGAGATTGTTCAAAGTCCGGAGCTCTCAGGCAAAA 407 |||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||| Sbjct 474 GCAGGTCATGGAGAGATATGTGCAAAGAGATTGTTCAAAGTCCCGAGCTCTCGGGCAAAA 533 Query 408 TCACATTTCCTGTTTCG-TTGAAACAGCCTGGACCAAGAGATGCAACAATGCAATGCTTT 466 ||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||| Sbjct 534 TCACATTTCCTGTTTCGCTT-AAACAGCCGGGACCAAGAGATGCAACAATGCAATGCTTT 592 Query 467 ATCAAAAGGGATAAATCTAACTTGACTTATCATTTATATCTTTGTCTCAGTCCTGCTTTG 526 ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 593 ATCAAGAGGGATAAATCTAACTTGACTTATCATTTATACCTTTGTCTCAGTCCTGCTTTG 652 Query 527 TTGGTTGAGAATGGAAAGTTTCTTCTTTCTGCAAAACGCATAAGAAGAACTACATACACC 586 |||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||| Sbjct 653 TTGGTTGAGAATGGAAAGTTCCTTCTTTCCGCAAAACGCATAAGAAGAACTACCTACACC 712 Query 587 GAGTACGTGATCTCTATGCACGCCGACACCATTTCGAGATCAAGCAATACCTACATTGGC 646 |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| Sbjct 713 GAGTACGTGATCTCTATGCACGCCGACACCATTTCGAGATCAAGCAGTACTTACATTGGC 772 Query 647 AAAATCAGGTCTAATTTTCTGGGGACGAAGTTTATAATATACGATACACAACCAGCATAC 706 |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| Sbjct 773 AAAATCAGGTCTAATTTTCTGGGGACGAAGTTCGTAATATACGATACACAACCTGCATAC 832 Query 707 AACAGCAACATCGCTCGAGCGGTCCAACCGGTAGGTCTTAGCCGCAGATTCTACTCAAAG 766 |||||||||| |||||||| ||||||||||||||| |||||||||||||| ||||||||| Sbjct 833 AACAGCAACACCGCTCGAGTGGTCCAACCGGTAGGCCTTAGCCGCAGATTTTACTCAAAG 892 Query 767 AGAGTCTCTCCCAAAGTACCTAGTGGGAGCTACAAAATTGCGCAGGTTTCTTATGAGCTA 826 ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 893 AGAGTATCTCCCAAAGTACCGAGTGGGAGCTACAAAATTGCGCAGGTTTCTTATGAGCTA 952 Query 827 AACGTTCTTGGTACCCGTGGTCCGAGGAGAATGCATTGTGCGATGAACTCAATTCCCGCC 886 |||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||| Sbjct 953 AACGTTCTTGGTACTCGCGGTCCAAGGAGAATGCATTGTGCGATGAACTCAATTCCCGCC 1012 Query 887 TCTTCCCTTGCGGAAGGCGGAACTGTGCCTGGACAGCCCGATATCATTGTCCCGCGCTCT 946 |||||||| || ||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 1013 TCTTCCCTCGCTGAAGGCGGAACCGTGCCTGGACAGCCTGATATCATTGTCCCGCGCTCT 1072 Query 947 ATTCTCGACGAATCGTTCCGCAGCATTACCTCTTCGTCATCGAGAAAAATCACTTACGAT 1006 |||||||||||||||||||||||||||||||| || || ||||||||||||||||||||| Sbjct 1073 ATTCTCGACGAATCGTTCCGCAGCATTACCTCCTCTTCGTCGAGAAAAATCACTTACGAT 1132 Query 1007 TACTCGAATGATTTTAGCAGTGCACGGTTTTCCGACATTCTTGGCCCGTTAAGCGAAGAC 1066 |||||||| |||||||| || |||||||||||||||||||| ||||||||| |||| ||| Sbjct 1133 TACTCGAACGATTTTAGTAGCGCACGGTTTTCCGACATTCTCGGCCCGTTAGGCGAGGAC 1192 Query 1067 CAAGAAGTGGTATTAGAAGAAGGGAAAGAGCGGAATTCGCCACCACTTGTGCTTAAGAAC 1126 |||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1193 GAAGAAGCGGCATTAGAAGAAGGGAAAGAGCGGAATTTGCCACCACTTGTGCTTAAGAAC 1252 Query 1127 AAGCCGCCGAGGTGGCATGAACAGCTTCAGTGTTGGTGTTTAAACTTCAGGGGACGTGTA 1186 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||| Sbjct 1253 AAGCCGCCGAGGTGGCATGAACAGCTTCAATGCTGGTGTTTAAACTTCAGGGGACGCGTA 1312 Query 1187 ACAGTCGCATCAGTTAAGAACTTTCAGCTCATTGCAGCAAACCAACCACAGCCTCAGCCT 1246 || |||||||||||||||||||||||||| ||||| ||||||||||| ||||| |||||| Sbjct 1313 ACTGTCGCATCAGTTAAGAACTTTCAGCTGATTGCTGCAAACCAACCTCAGCCCCAGCCT 1372 Query 1247 CAGCCTCAACCGCAACCTC-AA--C--CC-CTAACTCAGCCGCAACCGTCTGGTCAGACC 1300 || || ||||||||||||| || | || |||||||||||||||||||| ||||||||| Sbjct 1373 CAACCGCAACCGCAACCTCAAATTCAGCCTCTAACTCAGCCGCAACCGTCGGGTCAGACC 1432 Query 1301 GATGGTCCCGACAAGATCATATTGCAGTTTGGGAAAGTGGGAAAAGACATGTTCACGATG 1360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1433 GATGGTCCCGACAAGATCATATTGCAGTTTGGGAAAGTGGGAAAAGACATGTTCACGATG 1492 Query 1361 GATTTCCGGTATCCGCTCTCTGCGTTTCAGGCTTTCGCTATCTGTTTGAGCAGTTTCGAC 1420 |||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 1493 GATTTCCGGTATCCACTCTCAGCGTTTCAAGCTTTCGCTATCTGTTTGAGCAGTTTCGAT 1552 Query 1421 ACAAAACTTGCTTGCGAATAAGTCAAAAACTCAGCTTTGTATGTAATGTTATCAGATTTG 1480 || ||||| || ||||||||||| ||||| |||||||||||||||||||| ||||||||| Sbjct 1553 ACGAAACTCGCGTGCGAATAAGTAAAAAAGTCAGCTTTGTATGTAATGTTTTCAGATTTG 1612 Query 1481 CTTTGGAGATTCTTGTTTTGTGGTGTTTTATTTT-CACCGAGAATCTCATAATTAGATTT 1539 |||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||| Sbjct 1613 CTTTGGAGATTCTTGTTTCGTGGTGTTTTATTTTTCACCGAGAATCTCAGAATTAGATTT 1672 Query 1540 GTTT-CAAGCTTTCATTGCTTATGCTGTTTATTGGTGCAACCAAAAAGTTTATTC-GAGT 1597 |||| ||||||||||||||||||| ||||||||||||||||||||||||| |||| |||| Sbjct 1673 GTTTTCAAGCTTTCATTGCTTATGTTGTTTATTGGTGCAACCAAAAAGTTAATTCTGAGT 1732 Query 1598 TTGGTTTTTC 1607 |||||||||| Sbjct 1733 TTGGTTTTTC 1742 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60296857835 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5