BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G77080.4 Length=884 Score E Sequences producing significant alignments: (Bits) Value Ahg476870 jgi|Araly1|476870|fgenesh2_kg.2__2000__AT1G77080.2 1127 0.0 Ahg497339 jgi|Araly1|497339|fgenesh2_kg.233__4__AT5G65050.3 791 0.0 Ahg496727 jgi|Araly1|496727|fgenesh2_kg.8__2543__AT5G65050.2 706 0.0 > Ahg476870 jgi|Araly1|476870|fgenesh2_kg.2__2000__AT1G77080.2 Length=848 Score = 1127 bits (610), Expect = 0.0 Identities = 787/868 (91%), Gaps = 29/868 (3%) Strand=Plus/Plus Query 1 AGGATTAAATTAGGGCATAACCCTTATCGGAGATTTGAAGCCATGGGAAGAAGAAAAATC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1 AGGATTAAATTAGGGCATAACCCTTATCGGAGA-TTGAAGCCATGGGAAGAAGAAAAATC 59 Query 61 GAGATCAAGCGAATCGAGAACAAAAGCAGTCGACAAGTCACTTTCTCCAAACGACGCAAT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 GAGATCAAGCGAATCGAGAACAAAAGCAGTCGACAAGTCACTTTCTCCAAACGACGCAAT 119 Query 121 GGTCTCATCGACAAAGCTCGACAACTTTCGATTCTCTGTGAATCCTCCGTCGCTGTTGTC 180 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 GGTCTCATAGACAAAGCTCGACAACTTTCGATTCTCTGTGAATCCTCCGTCGCTGTTGTC 179 Query 181 GTCGTATCTGCCTCCGGAAAACTCTATGACTCTTCCTCCGGTGACGACATTTCCAAGATC 240 ||||| |||||||||||||||||||| || ||||||||||||||||| | | ||| | Sbjct 180 GTCGTCTCTGCCTCCGGAAAACTCTACGAGTCTTCCTCCGGTGACGAGA--TAGAAG--C 235 Query 241 ATTGATC--GTTATGAAATACAACATGCTGATGAACTTAGAGCCTTAGATCTTGAAGAAA 298 || || | || || ||| | | ||| || || ||| ||||||| ||||| Sbjct 236 GCTGGTCAAG-CCGGAGAT--AAC-T-C-AATG--TTTTGA-ACTT-GATCTTGCAGAAA 285 Query 299 AAATTCAGAATTATCTTCCACACAAGGAGTTACTAGAAACAGTCCAAAGCAAGCTTGAAG 358 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 286 AAATTCAGAATTATCTTCCACACAAGGAGTTACTAGAGACAGTCCAAAGCAAGCTTGAAG 345 Query 359 AACCAAATGTCGATAATGTAAGTGTAGATTCTCTAATTTCTCTGGAGGAACAACTTGAGA 418 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 346 AACCAAATGTCGATAATGTAAGTGTAGATTCTCTAATTTCTCTGGAGGAACAACTCGAGA 405 Query 419 CTGCTCTGTCCGTAAGTAGAGCTAGGAAGGCAGAACTGATGATGGAGTATATCGA-GTCC 477 ||||||||||||||||||| |||||||||||||||||||||||||||||| | || |||| Sbjct 406 CTGCTCTGTCCGTAAGTAGGGCTAGGAAGGCAGAACTGATGATGGAGTATGT-GAAGTCC 464 Query 478 CTTAAA-GAAAAGGAGAAATTGCTGAGAGAAGAGAACCAGGTTCTGGCTAGCCAGATGGG 536 ||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 465 -TTAAAAGAAAAGGAGATGTTGCTGAGGGAAGAGAACCAGGTTCTGGCTAGCCAGATGGG 523 Query 537 AAAGAATACGTTGCTGGCAACAGATGATGAGAGAGGAATGTTTCCGGGAAGTAGCTCCGG 596 ||||||||||||||||||| ||| ||||||||||||||||| |||| |||||||||||| Sbjct 524 GAAGAATACGTTGCTGGCAATAGAGGATGAGAGAGGAATGTTGCCGGAAAGTAGCTCCGG 583 Query 597 CAACAAAATACCGGAGACTCTCCCGCTGCTCAATTAGCCACCATCATCAACGGCT-GAGT 655 ||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||| Sbjct 584 CAACAAAATACCGGAGACTCTCCCGCTGCTCAAGTAACCACCATCATCAACGGCTTGAGT 643 Query 656 TTTC-ACCTTAAACTCAAAGCCTGATTCATAATTAAGAGAATAAATTTGTATATT-ATAA 713 |||| | ||||||||||| |||||||||| ||| |||| || | ||||||| ||| |||| Sbjct 644 TTTCCAGCTTAAACTCAACGCCTGATTCAGAATGAAGAAAACATATTTGTAAATTTATAA 703 Query 714 AAAGCTGTGTAATCTCAAACCTTTTATCTTCCTCTAGTGTGGAATTTAAGGTCAAAAAGA 773 |||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||| | Sbjct 704 AAAGCTGTATAATCTCAAACCTTTTATCTTCCTCTAGTGTGGAATTAAAGGTTAAAAA-A 762 Query 774 AAACGAGAAAGTATGGATCAGT-GTTGTACCT-CCTTCGGAGACAAGATCAGAGTTTGTG 831 ||| |||||||||||| || ||||||||| ||||| |||||||||||||||| || Sbjct 763 CT-CGATAAAGTATGGATC-GTTGTTGTACCTTCCTTCAAAGACAAGATCAGAGTTCATG 820 Query 832 TGTTTGTGTCTGAATGTACGGATTGGAT 859 ||||||||| |||||||||||||||||| Sbjct 821 TGTTTGTGTTTGAATGTACGGATTGGAT 848 > Ahg497339 jgi|Araly1|497339|fgenesh2_kg.233__4__AT5G65050.3 Length=767 Score = 791 bits (428), Expect = 0.0 Identities = 593/672 (88%), Gaps = 13/672 (2%) Strand=Plus/Plus Query 7 AAATTAGGGCATAACCCTTATCGGAGATTTGAAGCCATGGGAAGAAGAAAAATCGAGATC 66 |||||||||||||| |||||||||||| |||||||||||||||||||| |||||||| Sbjct 100 AAATTAGGGCATAAGCCTTATCGGAGA-AAGAAGCCATGGGAAGAAGAAAGGTCGAGATC 158 Query 67 AAGCGAATCGAGAACAAAAGCAGTCGACAAGTCACTTTCTCCAAACGACGCAATGGTCTC 126 ||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 159 AAGCGAATCGAGAGCAAAAGCAGTCGACAAGTTACTTTCTCCAAACGACGCAAAGGTCTC 218 Query 127 ATCGACAAAGCTCGACAACTTTCGATTCTCTGTGAATCCTCCGTCGCTGTTGTCGTCGTA 186 ||||| ||||||||||||||||| ||||||| |||||| ||| |||||||| ||| ||| Sbjct 219 ATCGAGAAAGCTCGACAACTTTCAATTCTCTCTGAATCTTCCATCGCTGTTCTCGCCGTC 278 Query 187 TCTGCCTCCGGAAAACTCTATGACTCTTCCTCCGGTGACGACATTTCCAAGATCATTGAT 246 |||| ||| ||||||||||| || || ||||||||||| |||| || |||||||||||| Sbjct 279 TCTGGCTCTGGAAAACTCTACAACGCTGCCTCCGGTGACAACATGTCAAAGATCATTGAT 338 Query 247 CGTTATGAAATACAACATGCTGATGAACTTAGAGCCTTAGATCTTGAAGAAAAAATTCAG 306 |||||||||||||| |||||||||||||| | |||||||||||||| ||||||||||| | Sbjct 339 CGTTATGAAATACATCATGCTGATGAACTGAAAGCCTTAGATCTTGCAGAAAAAATTCGG 398 Query 307 AATTATCTTCCACACAAGGAGTTACTAGAAACAGTCCAAAGCAAGCTTGAAGAACCAAAT 366 ||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||| Sbjct 399 AATTATCTTCCACACAAGGAGATACTAGAAATAGTTCAAAGCAAGCTTGAAGAACCAAAT 458 Query 367 GTCGATAATGTAAGTGTAGATTCTCTAATTTCTCTGGAGGAACAACTTGAGACTGCTCTG 426 ||||||| ||||||||||||||||||||||||| |||||||||| || |||||| ||||| Sbjct 459 GTCGATACTGTAAGTGTAGATTCTCTAATTTCTATGGAGGAACAGCTCGAGACTACTCTG 518 Query 427 TCCGTAAGTAGAGCTAGGAAGGCAGAACTGATGATGGAGTATA-TCGA-GTCCCTTAAAG 484 ||||||| |||||||| |||| ||||||| ||||||||| | | | || ||||||| ||| Sbjct 519 TCCGTAATTAGAGCTAAGAAGACAGAACTAATGATGGAGGA-AGT-GAAGTCCCTTCAAG 576 Query 485 AAAAGGAGAAATTGCTGAGAGAAGAGAACCAGGTTCTGGCTAGCCAGA-----T-GGGAA 538 ||| ||||| ||||||||||||||||||||| ||||||||||||| | | ||| | Sbjct 577 AAACGGAGATGTTGCTGAGAGAAGAGAACCAGATTCTGGCTAGCCATACCCAGTTGGGGA 636 Query 539 AGAATACGTTGCTGGCAACAGATGATGAGAGAGGAATGTTTCCGGGAAG-TAGCTCCGGC 597 |||||||||| |||| |||||| | ||||||| |||||| | ||||| | |||||||| Sbjct 637 AGAATACGTTTCTGGTAACAGAAGGTGAGAGAAGAATGTCAC-GGGAAAATGGCTCCGGC 695 Query 598 AACAAAATACCGGAGACTCTCCCGCTGCTCAATTAGCCACCATCATCAACGGCTGAGTTT 657 |||||| |||| |||||||| ||||||||||| || ||||||||||||||||| ||||| Sbjct 696 AACAAAGTACCTGAGACTCTTCCGCTGCTCAAGTAATCACCATCATCAACGGCTCAGTTT 755 Query 658 TCACCTTAAACT 669 |||||||||||| Sbjct 756 TCACCTTAAACT 767 > Ahg496727 jgi|Araly1|496727|fgenesh2_kg.8__2543__AT5G65050.2 Length=704 Score = 706 bits (382), Expect = 0.0 Identities = 483/532 (91%), Gaps = 5/532 (1%) Strand=Plus/Plus Query 1 AGGATTAAATTAGGGCATAACCCTTATCGGAGATTTGAAGCCATGGGAAGAAGAAAAATC 60 ||||| |||||||||||| | ||||||||| || | |||||||||||||||||||| || Sbjct 66 AGGATCAAATTAGGGCATTATCCTTATCGGTGAAAT-AAGCCATGGGAAGAAGAAAAGTC 124 Query 61 GAGATCAAGCGAATCGAGAACAAAAGCAGTCGACAAGTCACTTTCTCCAAACGACGCAAT 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 125 GAGATCAAGCGAATCGAGAACAAAAGCAGTCGACAAGTCACTTTCTCCAAACGACGCAAA 184 Query 121 GGTCTCATCGACAAAGCTCGACAACTTTCGATTCTCTGTGAATCCTCCGTCGCTGTTGTC 180 ||||||||||| ||||||||||||||||| |||||||| ||||| ||| |||||||| || Sbjct 185 GGTCTCATCGAGAAAGCTCGACAACTTTCAATTCTCTGGGAATCTTCCATCGCTGTTCTC 244 Query 181 GTCGTATCTGCCTCCGGAAAACTCTATGACTCTTCCTCCGGTGACGACATTTCCAAGATC 240 ||||| || | ||||||||||||||| || || | ||||||||| |||| || |||||| Sbjct 245 GTCGTCTCCGGCTCCGGAAAACTCTACAACGCTGCTTCCGGTGACAACATGTCAAAGATC 304 Query 241 ATTGATCGTTATGAAATACAACATGCTGATGAACTTAGAGCCTTAGATCTTGAAGAAAAA 300 |||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 305 ATTGATCGCTATGAAATACAACATGCTGATGAACTTAAAGCCTTAGATCTTGCAGAAAAA 364 Query 301 ATTCAGAATTATCTTCCACACAAGGAGTTACTAGAAACAGTCCAAAGCAAGCTTGAAGAA 360 |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 365 ATTCGGAATTATCTTCCACACAAGGAGTTACTAGAAATAGTCCAAAGCAAGCTTGAAGAA 424 Query 361 CCAAATGTCGATAATGTAAGTGTAGATTCTCTAATTTCTCTGGAGGAACAACTTGAGACT 420 ||||||||||||| ||||||||||||||||||||||||| |||||||||| || |||||| Sbjct 425 CCAAATGTCGATACTGTAAGTGTAGATTCTCTAATTTCTATGGAGGAACAGCTCGAGACT 484 Query 421 GCTCTGTCCGTAAGTAGAGCTAGGAAGGCAGAACTGATGATGGAGTATA-TCGA-GTCCC 478 ||||||||||||| |||||||| |||| ||||||| ||||||||| | | | || ||||| Sbjct 485 GCTCTGTCCGTAATTAGAGCTAAGAAGTCAGAACTAATGATGGAGGA-AGT-GAAGTCCC 542 Query 479 TTAAAGAAAAGGAGAAATTGCTGAGAGAAGAGAACCAGGTTCTGGCTAGCCA 530 || |||||| ||||| ||||||||||||||||||||| ||||||||||||| Sbjct 543 TTCAAGAAACGGAGATGTTGCTGAGAGAAGAGAACCAGATTCTGGCTAGCCA 594 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32747585703 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5