BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G77090.1 Length=1019 Score E Sequences producing significant alignments: (Bits) Value Ahg927108 jgi|Araly1|927108|scaffold_202669.1 1031 0.0 > Ahg927108 jgi|Araly1|927108|scaffold_202669.1 Length=821 Score = 1031 bits (558), Expect = 0.0 Identities = 637/675 (94%), Gaps = 5/675 (1%) Strand=Plus/Plus Query 161 AGACGAGTGGTGTGCTAGGGTTTTGAGTAGAAGATCGGTAATGGCGTCAGGGTTGGTC-- 218 ||||||| |||| |||| || ||||||||||||||||||| ||||||| || || || Sbjct 122 AGACGAGAGGTGCGCTACGGCTTTGAGTAGAAGATCGGTACTGGCGTCTGGATT-CTCTT 180 Query 219 T--CCTCGACGACGGCTTTAGCATTTCCAAGGGAAGGATTGGCTGTCGTTAAACAAGGTC 276 | |||| ||||| ||||| |||||| ||||||||||||||||||| ||||| |||| Sbjct 181 TAGTCTCGTCGACGTCTTTAATGTTTCCAGGGGAAGGATTGGCTGTCGTGAAACAGGGTC 240 Query 277 TTCTCGCTGGGAGAGTTCCTGGTCTGTCCGAACCTGATGAAGAAGGTTGGAGAACATACC 336 |||| || ||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 241 TTCTTGCCGGGAGAGTTCCTGGTCTATCCGAACCTGATGATGAAGGTTGGAGAACATACC 300 Query 337 GTAGACCAGACGAGAAGTCAGGAGGGCATGGTGTTGGTTGGAGTCCTATTATCCCTTACG 396 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GTAGACCAGACGAGAAGTCAGGAGGGCATGGTGTTGGTTGGAGTCCTATTATCCCTTACG 360 Query 397 CCTTTTCGGTTCCTCAAGATTGGAATGAGGTACCTGTATCGATCGCTGATCTTGGTGGCA 456 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 361 CCTTTTCGGTTCCTCAAGATTGGAATGAGGTACCTGTATCCATCGCTGATCTTGGTGGCA 420 Query 457 CCGAGATTGACTTGAGATTTGCTAGTCCTAAAGAAGGCCGTTTGTCTGTTATTGTAGCTC 516 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 CCGAGATTGACTTGCGATTTGCTAGTCCTAAAGAAGGCCGTTTGTCTGTTATTGTAGCTC 480 Query 517 CTGTTCTTAGATTTGCAGATAACCTCGGGGACGATGTTAAGATTGAAAATATTGGACAAC 576 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 481 CTGTTCTAAGATTTGCAGATAACCTCGGGGACGATGTTAAGATTGAAAATATTGGACCAC 540 Query 577 CAGCGAAGGTGATTAACGCGTTTGGACCAGAAGTTATTGGAGAAAACGTAGAAGGGAAGG 636 ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 541 CAGCGAAGGTGATCAACGCGTTTGGACCAGAAGTTATTGGAGAAAACGTTGAAGGGAAGG 600 Query 637 TGTTAAGTTCCAATGTTGCAGAACACGATGGTAGACTCTATTACCAATTCGAGCTAGAGC 696 ||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||| Sbjct 601 TGTTAAGTTCCAATGTTTCAGAACACGAAGGTAGACTCTATTACCAATTTGAGCTAGAGC 660 Query 697 CGCCTCATGTACTGATAACTGCAACAGCTGCCGGAAACCGCCTTTACTTGTTCAGTGTCA 756 | |||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 661 CACCTCATGTACTGATCACAGCAACAGCTGCCGGAAACCGCCTTTACTTGTTCAGTGTCA 720 Query 757 CCGGAAACGGTCTTCAATGGAAGAGACACTACAAGGATCTGAAGAGGATAGCTAGTTCAT 816 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 CCGGAAACGGTCTTCAATGGAAGAGACACTACAAGGATCTGAAGAGGATAGCTAGTTCAT 780 Query 817 TCCGCATTGTTTAGA 831 ||||||||||||||| Sbjct 781 TCCGCATTGTTTAGA 795 Score = 84.2 bits (45), Expect = 2e-15 Identities = 60/67 (90%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 28 TTCTCGAACTTCGCCGGAGAATGATGGAAACAGCTCTGCTCCGGTACTGCGTCAACTTTT 87 |||||||| |||||||| || |||||||||||||||||||||||||||||||| |||| Sbjct 2 TTCTCGAA-GTCGCCGGACAAACATGGAAACAGCTCTGCTCCGGTACTGCGTCAATTTTT 60 Query 88 CCGGTCA 94 || |||| Sbjct 61 CCAGTCA 67 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37894179498 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5