BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77120.1
Length=1456
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927111 jgi|Araly1|927111|scaffold_202672.1 1871 0.0
> Ahg927111 jgi|Araly1|927111|scaffold_202672.1
Length=1181
Score = 1871 bits (1013), Expect = 0.0
Identities = 1126/1182 (95%), Gaps = 2/1182 (0%)
Strand=Plus/Plus
Query 96 CAAGTTCTTCACTGTTGATAATGTCTACCACCGGACAGATTATTCGATGCAAAGCTGCTG 155
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CAAGTTCTTCTCTGTTGATAATGTCTACCACCGGACAGATTATTCGATGCAAAGCTGCTG 60
Query 156 TGGCATGGGAAGCCGGAAAGCCACTGGTGATCGAGGAAGTGGAGGTTGCTCCACCGCAGA 215
|||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||
Sbjct 61 TGGCATGGGAAGCCGGAAAGCCACTGGTTATGGAGGAAGTGGAGGTTGCTCCGCCGCAGA 120
Query 216 AACACGAAGTTCGTATCAAGATTCTCTTCACTTCTCTCTGTCACACCGATGTTTACTTCT 275
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 121 AACACGAAGTTCGTATCAAGATTCTCTTCACTTCTCTCTGTCACACTGATGTTTACTTCT 180
Query 276 GGGAAGCTAAGGGACAAACACCGTTGTTTCCACGTATCTTCGGCCATGAAGCTGGAGGGA 335
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 181 GGGAAGCTAAGGGACAAACACCGCTGTTTCCTCGTATCTTCGGCCATGAAGCTGGAGGGA 240
Query 336 TTGTTGAGAGTGTTGGAGAAGGAGTGACTGATCTTCAGCCAGGAGATCATGTGTTGCCGA 395
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 241 TTGTTGAGAGTGTTGGAGAAGGAGTGACTGATCTTCAGCCAGGAGATCATGTGTTGCCCA 300
Query 396 TCTTTACCGGAGAATGTGGGGAGTGTCGTCATTGCCACTCGGAGGAATCAAACATGTGTG 455
|||| |||||||||||||| || |||| |||||| |||||||||||||||||||||||||
Sbjct 301 TCTTCACCGGAGAATGTGGAGATTGTCCTCATTGTCACTCGGAGGAATCAAACATGTGTG 360
Query 456 ATCTTCTCAGGATCAACACCGAGCGAGGAGGGATGATTCACGATGGTGAATCAAGATTCT 515
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 361 ATCTTCTCAGGATCAACACCGAGCGAGGAGGGATGATTCACGATGGTGAATCGAGATTCT 420
Query 516 CCATTAATGGCAAACCAATTTACCATTTCCTTGGGACTTCCACGTTCAGTGAGTACACAG 575
|||| ||||||||||| ||| | ||||||||||||||||||||||| ||||||||||| |
Sbjct 421 CCATCAATGGCAAACCGATTCATCATTTCCTTGGGACTTCCACGTTTAGTGAGTACACTG 480
Query 576 TGGTTCACTCTGGTCAGGTTGCTAAGATCAATCCGGATGCTCCTCTTGACAAGGTCTGTA 635
|||||||||| |||||||| |||||||||||||||||||||||||||||||| || || |
Sbjct 481 TGGTTCACTCCGGTCAGGTCGCTAAGATCAATCCGGATGCTCCTCTTGACAAAGTTTGCA 540
Query 636 TTGTCAGTTGTGGTTTGTCTACTGGGTTAGGAGCAACTTTGAATGTGGCTAAACCCAAGA 695
|||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTGTTAGTTGTGGTTTATCCACTGGGTTAGGAGCAACTTTGAATGTGGCTAAACCCAAGA 600
Query 696 AAGGTCAAAGTGTTGCCATTTTTGGTCTTGGTGCTGTTGGTTTAGGC-GCTGCAGAAGGT 754
|||||||||||||||||||||| || |||||||||||||||||| || ||||||||||||
Sbjct 601 AAGGTCAAAGTGTTGCCATTTTCGGACTTGGTGCTGTTGGTTTA-GCTGCTGCAGAAGGT 659
Query 755 GCTAGAATCGCTGGTGCTTCTAGGATCATCGGTGTTGATTTTAACTCTAAAAGATTCGAC 814
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 660 GCTAGAATCGCTGGTGCTTCTAGGATCATCGGTGTTGATCTTAACTCTCAAAGATTCGAC 719
Query 815 CAAGCTAAGGAATTCGGTGTGACCGAGTGTGTGAACCCGAAAGACCATGACAAGCCAATT 874
|||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||| ||
Sbjct 720 CAAGCTAAGGAATTCGGTGTGACCGAGTTTGTGAACCCGAGAGACCATGACAAACCAGTT 779
Query 875 CAACAGGTGATCGCTGAGATGACGGATGGTGGGGTGGACAGGAGTGTGGAATGCACCGGA 934
|||||||||||||||||||||||| |||| || ||||||||||||||||| ||||| |||
Sbjct 780 CAACAGGTGATCGCTGAGATGACGAATGGAGGAGTGGACAGGAGTGTGGAGTGCACTGGA 839
Query 935 AGCGTTCAGGCCATGATTCAAGCATTTGAATGTGTCCACGATGGCTGGGGTGTTGCAGTG 994
||||||||||||||||||||||||||||||||||| || ||||| ||||||||||| |||
Sbjct 840 AGCGTTCAGGCCATGATTCAAGCATTTGAATGTGTTCATGATGGTTGGGGTGTTGCGGTG 899
Query 995 CTGGTGGGTGTGCCAAGCAAAGACGATGCCTTCAAGACTCATCCGATGAATTTCTTGAAT 1054
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 CTGGTCGGTGTGCCAAGCAAAGACGATGCCTTCAAGACTCATCCGATGAATTTCTTGAAT 959
Query 1055 GAGAGGACTCTTAAGGGTACTTTCTTCGGGAACTACAAACCCAAAACTGACATTCCCGGG 1114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GAGAGGACTCTTAAGGGTACTTTCTTCGGGAACTACAAACCCAAAACTGACATTCCCGGG 1019
Query 1115 GTTGTGGAAAAGTACATGAACAAGGAGCTGGAGCTTGAGAAATTCATCACTCACACAGTG 1174
||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1020 GTTGTAGAAAAGTACATGAACAAGGAGCTGGAGCTTGAGAAATTCATCACCCATACAGTG 1079
Query 1175 CCATTCTCGGAAATCAACAAGGCCTTTGATTACATGCTGAAGGGAGAGAGTATTCGTTGC 1234
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1080 CCATTCTCGGAGATCAACAAGGCCTTTGATTACATGTTGAAGGGAGAGAGTATTCGTTGC 1139
Query 1235 ATCATCACCATGGGTGCTTGAAGCCATTCTCTCGCAGATGAT 1276
|||||||||||||||||||||||||||||| | || ||||||
Sbjct 1140 ATCATCACCATGGGTGCTTGAAGCCATTCTGTTGCCGATGAT 1181
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54469050350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5