BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77130.1
Length=2146
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476876 jgi|Araly1|476876|fgenesh2_kg.2__2006__AT1G77130.1 3288 0.0
> Ahg476876 jgi|Araly1|476876|fgenesh2_kg.2__2006__AT1G77130.1
Length=2105
Score = 3288 bits (1780), Expect = 0.0
Identities = 2006/2115 (95%), Gaps = 15/2115 (1%)
Strand=Plus/Plus
Query 37 AAATCCCTAAAATGTCTCGTCTTTTGTTGTTTACCAGGCGATTATGAAATTCTCGAAACC 96
|||||||||||||||||||||| || | | || ||||||| |||||||||||||||||
Sbjct 1 AAATCCCTAAAATGTCTCGTCTCATG-T-TATA--AGGCGATAATGAAATTCTCGAAACC 56
Query 97 GACCCTGGTCTTACGGAGACGATGATACCTTCCTCAAGTCCCATGGAGTCAAGACATCGA 156
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 57 GACCCTGATCTTACGGAGACAATGATACCTTCCTCAAGTCCCATGGAGTCAAGACATCGA 116
Query 157 CTCTCGTTCTCAAATGAGAAGACAAGTAGGAGGAGATTTCAAAGAATTGAGAAGGGTGTC 216
|||||||| |||||||||||| ||| |||||||||||||||||||||||| |||||||||
Sbjct 117 CTCTCGTTTTCAAATGAGAAGTCAACTAGGAGGAGATTTCAAAGAATTGAAAAGGGTGTC 176
Query 217 AAGTTCAACACTCTGAAACTTGTGTTGATTTGTATAATGCTTGGAGCTTTGTTCACGATC 276
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 177 AAGTTCAATACTCTGAAACTTGTGTTGATTTGTATTATGCTTGGAGCTTTGTTCACCATC 236
Query 277 TACCGTTTTCGTTATCCACCGCTACAAATTCCTGAAATTCCAACTAGTTTTGGTCTTACT 336
|||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||
Sbjct 237 TACCGTTTTCGTTATCCACCGCTACAAATTGCTGAGATTCCAACTAGTTTTGGTGTTACT 296
Query 337 ACTGATCCTCGCTATGTAGCTACAGCTGAGATCAACTGGAACCATATGTCAAATCTTGTT 396
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 297 ACTGATCCTCGCTATGTAGCTACAGCTGAGATCAACTGGAACCATGTGTCAAATCTTGTT 356
Query 397 GAGAAGCACGTATTTGGTAGAAGCGAGTATCAAGGAATTGGTCTTATAAATCTTAACGAT 456
||||||||| |||||||||||| |||||||||||||||||| |||||||||||| |||||
Sbjct 357 GAGAAGCACTTATTTGGTAGAACCGAGTATCAAGGAATTGGCCTTATAAATCTTCACGAT 416
Query 457 AACGAGATTGATCGATTCAAGGAGGTAACGAAATCTGACTGTGATCATGTAGCTTTGCAT 516
|||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 417 AACGAGATTGATCGGTTCAAGGAGGTTATGAAATCTGACTGTGATCATGTAGCTTTGCAT 476
Query 517 CTAGATTATGCTGCAAAGAACATAACATGGGAATCTTTATACCCGGAATGGATTGATGAA 576
||| | |||||||||||||| || |||||||||||| ||||||||||||||||||| |||
Sbjct 477 CTACACTATGCTGCAAAGAATATTACATGGGAATCTCTATACCCGGAATGGATTGACGAA 536
Query 577 GTTGAAGAATTCGAAGTCCCTACTTGTCCTTCTCTGCCTTTGATTCAAATTCCTGGCAAG 636
|| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 537 GTAGAAGAATTCGAAGTCCCTACTTGTCCTTCTCTTCCTTTGATTCAAGTTCCTGGCAAG 596
Query 637 CCTCGGATTGATCTTGTAATTGCCAAGCTTCCGTGTGATAAATCAGGAAAATGGTCTAGA 696
||||| || |||||||| |||||||||||||||||||| ||||||||||||||||| |||
Sbjct 597 CCTCGCATCGATCTTGTCATTGCCAAGCTTCCGTGTGACAAATCAGGAAAATGGTCAAGA 656
Query 697 GATGTGGCTCGCTTGCATTTACAACTTGCAGCAGCTCGAGTGGCGGCTTCTTCTAAAGGA 756
||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 657 GATGTGGCTCGATTGCATTTACAACTTTCTGCAGCTCGAGTGGCGGCTTCTTCTAAAGGG 716
Query 757 CTTCATAATGTTCATGTGATTTTGGTATCTGATTGCTTTCCAATACCGAATCTTTTTACG 816
|||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 717 CTTCATGATGTTCATGTGATTTTGGTATCTGATTGCTTTCCAATTCCAAATCTTTTTACC 776
Query 817 GGTCAAGAACTTGTTGCCCGTCAAGGAAACATATGGCTGTATAAGCCTAATCTTCACCAG 876
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 777 GGTCAAGAACTTGTTGCCCGTCAAGGAAACATATGGCTGTATAAGCCTAACCTACACCAG 836
Query 877 CTAAGACAAAAGTTACAGCTTCCTGTTGGTTCCTGTGAACTTTCTGTTCCTCTTCAAGCT 936
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 837 CTAAGACAAAAGTTACAGCTTCCTGTTGGTTCATGTGAACTTTCTGTTCCTCTTCAAGCT 896
Query 937 AAAGATAATTTCTACTCCGCAGGTGCAAAGAAAGAAGCTTACGCGACTATCTTGCATTCT 996
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 897 AAAGATAATTTCTACTCCGCAAGTGCAAAGAAAGAAGCTTATGCGACTATCTTGCATTCT 956
Query 997 GCCCAATTTTATGTCTGTGGAGCCATTGCAGCTGCACAGAGCATTCGAATGTCAGGCTCT 1056
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 957 GCTCAATTTTATGTCTGTGGAGCCATTGCAGCTGCGCAGAGCATTCGAATGTCAGGCTCT 1016
Query 1057 ACTCGTGATCTGGTCATACTTGTTGATGAAACGATAAGCGAATACCATAAAAGTGGCTTG 1116
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1017 ACTCGTGATCTGGTCATACTTGTTGATGATACGATAAGCGAATACCATAAAAGTGGCTTG 1076
Query 1117 GTAGCTGCTGGATGGAAGATTCAAATGTTTCAAAGAATCAGGAACCCGAATGCTGTACCA 1176
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1077 GTAGCTGCTGGATGGAAGATTCACATGTTTCAAAGAATCAGGAACCCGAATGCTATACCA 1136
Query 1177 AATGCCTACAACGAATGGAACTACAGCAAGTTTCGTCTTTGGCAACTGACTGAATACAGT 1236
||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 1137 AATGCATACAACGAATGGAACTACAGCAAGTTCCGTCTTTGGCAATTGACTGAATACAGT 1196
Query 1237 AAGATCATCTTCATCGATGCAGACATGCTTATCCTGAGAAACATTGATTTCCTCTTCGAG 1296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 AAGATCATCTTCATCGATGCAGACATGCTTATCCTGAGAAACATTGATTTCCTCTTCGAG 1256
Query 1297 TTCCCTGAGATATCAGCAACTGGAAACAATGCTACGCTCTTCAACTCTGGTCTAATGGTG 1356
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1257 TTCCCTGAGATATCTGCAACTGGAAACAATGCTACGCTCTTCAACTCCGGTCTAATGGTG 1316
Query 1357 GTTGAGCCATCTAATTCAACATTCCAGTTACTAATGGATAACATTAATGAAGTTGTGTCT 1416
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1317 GTTGAGCCATCTAATTCAACATTCCAGTTACTAATGGACAACATTAATGAAGTTGTGTCT 1376
Query 1417 TACAACGGAGGAGACCAAGGTTACCTTAACGAGATATTCACATGGTGGCATCGGATTCCA 1476
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1377 TACAACGGAGGAGACCAAGGTTACCTTAACGAGATATTCACATGGTGGCATCGCATCCCG 1436
Query 1477 AAACACATGAATTTCTTGAAGCATTTCTGGGAAGGAGACGAACCTGAGATTaaa-aaaaT 1535
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1437 AAACACATGAATTTCTTGAAGCATTTCTGGGAAGGAGACGAACCTGAGAT-AAAGAAAAT 1495
Query 1536 GAAGACGAGTCTATTTGGAGCTGATCCTCCGATCCTATACGTTCTTCATTACCTAGGTTA 1595
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||
Sbjct 1496 GAAGACGAGTCTATTTGGAGCTGATCCTCCTATCCTCTACGTTCTTCATTACCTTGGTTA 1555
Query 1596 TAACAAACCCTGGTTATGCTTCAGAGACTATGACTGCAATTGGAATGTCGATATTTTCCA 1655
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1556 TAACAAACCCTGGTTATGCTTCAGAGACTATGATTGCAACTGGAATGTCGATATTTTCCA 1615
Query 1656 GGAATTTGCTAGTGACGAGGCTCATAAAACCTGGTGGAGAGTGCACGACGCAATGCCTGA 1715
|||||| || |||||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct 1616 GGAATTCGCAAGTGACGAAGCACATAAAACATGGTGGAGAGTGCACGACGCAATGCCTGA 1675
Query 1716 AAACTTGCATAAGTTCTGTCTACTAAGATCGAAACAGAAGGCGCAACTTGAATGGGATAG 1775
|||||||| ||||||||||| || ||||||||||||||||||||||||||||||||| |
Sbjct 1676 GAACTTGCACAAGTTCTGTCTTCTGAGATCGAAACAGAAGGCGCAACTTGAATGGGATCG 1735
Query 1776 GAGACAAGCAGAGAAAGGGAACTACAAAGATGGACATTGGAAGATAAAGATCAAAGAC-A 1834
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 1736 GAGACAAGCAGAGAAAGGGAATTACAAAGATGGACACTGGAAGATAAAGATCAAAGATGA 1795
Query 1835 AGAGACTTAAGACTTGTTTCGAAGATTTCTGCTTTTGGGAGAGTATGCTTTGGCATTGGG 1894
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1796 A-AGACTTAAGACTTGTTTCGAAGATTTCTGTTTTTGGGAGAGTATGCTTTGGCATTGGG 1854
Query 1895 GTGAGACGAACT-CTACCAACAATTCTTCCACCACCACCACTTCATCACCGCCGCATAAA 1953
|||||||||| | ||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1855 GTGAGACGAA-TGCTACCAATAATTCTTCCACCACCACCACTTCATCACCACCGCATAAA 1913
Query 1954 ACCGCTCTCCCTTCCCTGTGAATTCTTTTGGCTTTCTGGTTTGGTACAAA-TTACTCTGC 2012
||||||||| |||||||||||||||||||||||||| | ||| ||||||| ||||||| |
Sbjct 1914 ACCGCTCTCTCTTCCCTGTGAATTCTTTTGGCTTTC-G-TTTAGTACAAAATTACTCTTC 1971
Query 2013 CTTTCGCCAACCAAATGTGGGTTGGATATGTTCTTTTGtttttt-tATTATCAGCTTGAA 2071
|||| ||||||||||||||||||| |||||||||||||||||| | |||||||||||||
Sbjct 1972 -TTTCACCAACCAAATGTGGGTTGGTTATGTTCTTTTGTTTTTTGTTTTATCAGCTTGAA 2030
Query 2072 ACCTGTATACGAATCCCAGAAACAATGTAATCATGAGGGGATAAAGGAATGAAAGACAAA 2131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2031 ACCTGTATACGAATCCCAGAAACAATGTAATCATGAGGGGATAAAGGAATGAAAGACAAA 2090
Query 2132 TAAAGAATTTACAGG 2146
| ||||||||||||
Sbjct 2091 TGCAGAATTTACAGG 2105
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80751319400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5