BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77180.1
Length=2229
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476882 jgi|Araly1|476882|fgenesh2_kg.2__2012__AT1G77180.1 3206 0.0
> Ahg476882 jgi|Araly1|476882|fgenesh2_kg.2__2012__AT1G77180.1
Length=2189
Score = 3206 bits (1736), Expect = 0.0
Identities = 2052/2202 (93%), Gaps = 32/2202 (1%)
Strand=Plus/Plus
Query 35 AAAGGCTTCACGCCCGATTTCTTT-TTTCCCCAGAAA-AAGGCTTCACTTCCGTTCGTTG 92
|||||||||||||| ||||||||| |||||||||||| || ||||||| |||||| ||||
Sbjct 1 AAAGGCTTCACGCCTGATTTCTTTCTTTCCCCAGAAAGAA-GCTTCACCTCCGTTGGTTG 59
Query 93 TTCTTCATCGGTCTGCGCCGCCTCGCACATCGTTTCACCTTTCTCAGAATCTCTCTTCCC 152
|||| ||||| |||||||||| |||||||||||| || ||||||||||||| ||||||||
Sbjct 60 TTCTCCATCGCTCTGCGCCGCGTCGCACATCGTTACATCTTTCTCAGAATCCCTCTTCCC 119
Query 153 GTCGATTAGTTTCCTCAGAGGTT-G------CGATTTGTTGAAAACCTTGATTTAGACTA 205
|||||||||||||||| |||||| | ||||||| |||||| ||||||||||| ||
Sbjct 120 GTCGATTAGTTTCCTCGGAGGTTAGCTTCTTCGATTTGCTGAAAATCTTGATTTAGAGTA 179
Query 206 TGAAGTCTCTTAATGATCTTCCTGCGCCCAAATCAACCACTACCACGTATTATGATCATT 265
||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||
Sbjct 180 TGAAGTCTCTTAATGATCTCCCAGCGCCCAAATCAACCACTACCACGTTTTATGATCATT 239
Query 266 CTAATGATGCTTGGTTCAAAAACCGAGTCACTGAATCCGAGACGGTGAAATCCTCCAGTA 325
|||||||| | |||||||||||||| ||||||||||||||||| || |||||||||||||
Sbjct 240 CTAATGATCCATGGTTCAAAAACCGTGTCACTGAATCCGAGACTGTAAAATCCTCCAGTA 299
Query 326 TCAAATTTAAAGTGGTGCCTGCTTACCTGAATCGTCAAGGTTTACGTCCGAAGAATCCAG 385
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 300 TCAAATTTAAACCCGTGCCTGCTTACCTGAATCGTCAAGGTTTACGTCCCAAGAATCCCG 359
Query 386 AGGATTTTGGCGATGGTGGTGCTTTCCCGGAGATTCATCTTCCTCAGTATCCTCTTCTTA 445
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 360 AGGATTTTGGAGATGGTGGTGCTTTCCCGGAGATTCATCTTCCTCAGTATCCTCTTGGTA 419
Query 446 TGGGTAAGAATAAATCCAATAAGCCTGGAGCTAAGACTCTCCCTGTTACTGTCGATGCTC 505
|||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 420 TGGGTAGGAATAAATCCAATAAGCCTGGAGCCAAGACTCTCCCTGTCACTGTCGATGCTC 479
Query 506 AGGGAAACGTGGTCTTTGACGCTATAGTGAGGCAGAATGAGAACTCGAGGAAGATTGTTT 565
||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||
Sbjct 480 AGGGAAACGTGGTCTTTGACGCTATTGTGAGGCAGAATGAGAACTCTAAGAAGATTGTTT 539
Query 566 ATTCTCAGCATAAGGATATTATTCCAAAGTTTCTGAAAAACGAGGGAGACTTGGGTACTG 625
| ||||||||||||||||||||||| ||| | |||||||||||||||||||||| | | |
Sbjct 540 ACTCTCAGCATAAGGATATTATTCCTAAGATACTGAAAAACGAGGGAGACTTGGATGCGG 599
Query 626 TTGTTGATGAAGAGGAGGAATTGCAGAAGGAGATTCAGGAGACTGCTGAAGAAACGAAAG 685
| || || ||||||||||||||||||||| |||| |||||||||||||| ||||| ||||
Sbjct 600 TGGTGGACGAAGAGGAGGAATTGCAGAAGCAGATCCAGGAGACTGCTGAGGAAACCAAAG 659
Query 686 CTGCCATTGAGAAGATTGTGAATGTGAGACTGAGTGCAGCGCAGCCTAGTAATATAGCAA 745
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 660 CTGCCATTGAGAAGATTGTGAATGTGAGACTCAGTGCAGCTCAGCCTAGTAATATAGCAA 719
Query 746 GGCAATCGGGAGATTCACAGTACATTAAATATAAGCCATCCCAGCAATCTTCTGCCTTCA 805
||||||| || || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GGCAATCCGGCGACTCTCAGTACATTAAATATAAGCCATCCCAGCAATCTTCTGCCTTCA 779
Query 806 ATTCTGGTGCTAAAGAGAGGATCATTAGGATGGTGGAGATGCCTGTAGATCCACTTGATC 865
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 ATTCCGGTGCTAAAGAGAGGATCATTAGGATGGTGGAGATGCCTGTAGATCCACTTGATC 839
Query 866 CACCAAAGTTCAAGCACAAGAGAGTCCCAAGGGCTTCTGGTTCTCCGCCTGTTCCGGTCA 925
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 840 CACCAAAGTTCAAGCACAAGAGAGTCCCAAAGGCTTCTGGTTCTCCGCCTGTTCCGGTCA 899
Query 926 TGCATTCACCGCCCAGGCCTGTTACCGTCAAGGACCAGCAAGACTGGAAAATCCCTCCTT 985
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 900 TGCATTCACCGCCCAGGCCTGTTACTGTCAAGGACCAGCAAGACTGGAAAATCCCTCCTT 959
Query 986 GTATCTCCAATTGGAAGAATCCGAAAGGTTACACAATCCCTCTTGACAAACGTCTAGCTG 1045
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 960 GTATCTCCAATTGGAAGAATCCGAAAGGTTACACAATCCCTCTTGATAAACGTCTAGCTG 1019
Query 1046 CTGATGGAAGGGGCCTACAAGACGTTCAGATCAATGATAACTTTGCCAAGTTATCAGAGG 1105
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1020 CTGATGGAAGAGGCCTACAAGACGTTCAGATCAATGATAACTTTGCCAAGTTATCCGAAG 1079
Query 1106 CCCTCTATGTAGCTGAGCAGAAAGCTAGAGAGGCTGTTTCAATGCGTTCCAAGGTGCAAA 1165
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1080 CCCTCTATGTAGCTGAGCAGAAAGCTAGAGAGGCTGTTTCAATGCGTTCCAAGGTGCAGA 1139
Query 1166 AAGAGATGGTGATGAAGGACAAGGAAAGGAAAGAGCAGGAATTGAGGGCTCTTGCCCAAA 1225
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 AAGAGATGGTGATGAAGGAGAAGGAAAGGAAAGAGCAGGAATTGAGGGCTCTTGCCCAAA 1199
Query 1226 AAGCTCGCTCCGAAAGAACCGGTGCTGCTATGAGTATGCCTGTCTCATCTGACAGGGGTA 1285
||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1200 AAGCTCGTTCCGAAAGAACTGGTGCTGCTGGGAGTATGCCTGTCTCATCTGACAGGGGTA 1259
Query 1286 GGAGTGAAAGTGTTGACCCAAGAGGTGATTATGACAACTATGACCaggatagaggaaggg 1345
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1260 GGAGTGAAAGTGTTGACCCAAGAGGTGATTATGACAACTATGACCAGGAGAGAGTAAGGG 1319
Query 1346 aaagagaaagggaagagcctcaagagacg-agggaggagagggaaaaaaggattcagaga 1404
||||||||||||||||||| |||||| | |||||||| ||||| | |||||||||||
Sbjct 1320 AAAGAGAAAGGGAAGAGCCGAAAGAGA-GTAGGGAGGAAAGGGAGGCACGGATTCAGAGA 1378
Query 1405 gaaaagatacgagaagagcgtcgcagggaaagagagagggagagaagGTTGGATGCCAAA 1464
|| ||||| |||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1379 GAGAAGATCCGAGAAGAGCGTCGCAGGGAAAGAGAGAGGGAGAGAAGGTTGGAAGCTAAA 1438
Query 1465 GATGCTGCCATGGGGAAGAAGAGCAAGATCACCAGAGACAGAGACCGTGACATCAGTGAG 1524
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1439 GATGCTGCCATGGGGAAGAAGAGCAAGATCACTAGAGACAGAGACCGTGATATCAGTGAG 1498
Query 1525 AAAGTTGCTCTTGGAATGGCATCTACTGGAGGAAAAGGTGGTGGTGAAGTTATGTATGAT 1584
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1499 AAAGTTGCTCTTGGAATGGCATCTACTGGAGGAAAAGGTGGTG---AAGTTATGTATGAT 1555
Query 1585 CAACGTCTGTTTAACCAAGACAAAGGAATGGACTCTGGTTTCGCTGCTGATGACCAATAC 1644
||| | ||||||||||| || ||||||||||||||||| |||||| ||||||||||||||
Sbjct 1556 CAAAGGCTGTTTAACCAGGAGAAAGGAATGGACTCTGGGTTCGCTACTGATGACCAATAC 1615
Query 1645 AACT-TATACGACAAAGGCTTGTTCACTGCACAACCAACTCTTTCGACTTTGTACAAGCC 1703
|| | |||| |||||||||||||||||||||||||| |||||||| || ||||||||||
Sbjct 1616 AA-TGTATATGACAAAGGCTTGTTCACTGCACAACCCACTCTTTCAACGCTGTACAAGCC 1674
Query 1704 AAAGAAGGATAACGATGAAGAAATGTATGGAAACGCTGATGAGCAGCTCGATAAGATCAA 1763
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1675 AAAGAAGGATAACGATGAAGAAATGTATGGAAACGCAGATGAGCAGCTCGATAAGATCAA 1734
Query 1764 GAATACTGAGAGGTTTAAGCCTGACAAAGCTTTCACAGGGGCTTCAGAGAGGGTGGGTAG 1823
||| |||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1735 GAACACTGAGAGGTTTAAACCTGACAAAGCTTTCACAGGGGCTTCCGAGAGGGCGGGTAG 1794
Query 1824 TAAGAGAGACCGACCTGTTGAGTTTGAGAAGGAAGAGGAACAAGATCCTTTCGGTCTTGA 1883
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1795 TAAGAGAGAACGCCCTGTTGAGTTTGAGAAGGAAGAGGAACAAGATCCTTTCGGTCTTGA 1854
Query 1884 GAAGTGGGTTTCTGATTTAAAGAAGGGTAAGAAACCTTTGGACAAGATCGGGTCTGGTGG 1943
| ||||||||||||||| ||||| |||||||||||||||||||| ||||||||||| ||
Sbjct 1855 CAGGTGGGTTTCTGATTTGAAGAAAGGTAAGAAACCTTTGGACAAAATCGGGTCTGGAGG 1914
Query 1944 AACTATGAGAGCAAGTGGCGGTGGTGGTAGCTCTTCAAGGGACGATGACCACGGCGGTTC 2003
|||||||||||||||||| || || ||||||||||||||||| |||| ||||||||||
Sbjct 1915 AACTATGAGAGCAAGTGGAGGCGGCGGTAGCTCTTCAAGGGA---TGACGACGGCGGTTC 1971
Query 2004 TGGTCGAACCAAGATCAATTTCGAACGCAGTGACCGGCGTTAAAAGTCAAGA-C--AA-A 2059
||||||||||||||||||||||||||||||| | ||||||||||||||||| | || |
Sbjct 1972 TGGTCGAACCAAGATCAATTTCGAACGCAGT-A--GGCGTTAAAAGTCAAGAACTTAAGA 2028
Query 2060 ----GAAAAAGCTCAGTAACTGATCTTTGATTTCAATATATAACTTGTTATTTTGGATCT 2115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2029 CAATGAAAAAGCTCAGTAACTGATCTTTGATTTCAATATATAACTTGTTATTTTGGATCT 2088
Query 2116 GTTAAAACAGTTTGCTTTGGATTATCAGTATTTATGTTGTTGTGAGTCTCTTAAACTACT 2175
||| |||||||||||||| |||||||||||||||||||||||||||||||| || ||| |
Sbjct 2089 GTTGAAACAGTTTGCTTTTGATTATCAGTATTTATGTTGTTGTGAGTCTCTGAA-CTAGT 2147
Query 2176 CGAATACAATCTTTCAGCTTCATAATATCAGATCTTTTGAGC 2217
||| |||||||||||| ||||||||||||| |||||||||||
Sbjct 2148 CGAGTACAATCTTTCAACTTCATAATATCACATCTTTTGAGC 2189
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83912809735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5