BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77280.1
Length=2385
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476891 jgi|Araly1|476891|fgenesh2_kg.2__2021__AT1G77280.1 1932 0.0
Ahg472395 jgi|Araly1|472395|fgenesh2_kg.1__2349__AT1G21590.1 935 0.0
Ahg951209 jgi|Araly1|951209|scaffold_803096.1 178 2e-43
> Ahg476891 jgi|Araly1|476891|fgenesh2_kg.2__2021__AT1G77280.1
Length=2382
Score = 1932 bits (1046), Expect = 0.0
Identities = 1122/1160 (97%), Gaps = 0/1160 (0%)
Strand=Plus/Plus
Query 1226 ACAATAGTCCAAGAAAATTGCCAGAGGAATTAGAGGGACTTTATGAGAGGTTCTCTTCAA 1285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1223 ACAATAGTCCAAGAAAATTGCCAGAGGAATTAGAGGGACTTTATGAGAGGTTCTCTTCAA 1282
Query 1286 CTTGCCGGTTTTTCAAGTACAAGGAACTCGTTTCAGTGACATCGAATTTCTCCGCTGATA 1345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1283 CTTGCCGGTTTTTCAAGTACAAGGAACTCGTTTCAGTGACATCGAATTTCTCCGCTGATA 1342
Query 1346 ATTTTATTGGGAAAGGAGGCAGCAGCCGGGTTTTTAGAGGTTGTTTGTCCAATGGAAGAG 1405
||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1343 ATTTTATCGGGAAAGGTGGCAGCAGCCGGGTTTATAGAGGTTGTTTGTCCAATGGAAGAT 1402
Query 1406 TGGTTGCTGTGAAGATTCTCAAGCAAACCGAAGATGTCTTGAATGACTTCGTGGCTGAGA 1465
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1403 TGGTTGCTGTGAAAATTCTCAAGCAAACCGAAGATGTCTTGAATGATTTCGTGGCTGAGA 1462
Query 1466 TTGAGATCATCACAACATTACACCATAAGAATATTATCTCCCTCTTAGGATTTTGCTTTG 1525
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1463 TTGAGATCATCACAACACTACACCATAAGAACATTATCTCCCTCTTAGGATTTTGCTTTG 1522
Query 1526 AAGACCATAACCTTTTACTTGTATACAATTATCTCTCAAGAGGAAGCCTTGAAGAGAACC 1585
||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1523 AAGACCACAACCTATTACTTGTATACAATTATCTCTCAAGAGGAAGCCTCGAAGAGAACC 1582
Query 1586 TTCATGGAAACAAGAAAGATCCGCTTGCATTTTGTTGGAGCGAGAGGTATAAAGTGGCTG 1645
|||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1583 TTCACGGAAATAAGAAAGATCCTCTTGCATTTTGTTGGAGCGAGAGGTATAAAGTGGCTG 1642
Query 1646 TGGGAGTAGCAGAGGCATTGGACTATCTGCATAATACTGCTTCGCAACCCGTCATCCACA 1705
||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1643 TGGGAGTAGCAGAGGCACTGGACTACCTGCATAATACTGCTTCACAACCCGTCATCCACA 1702
Query 1706 GAGATGTTAAGTCATCAAACATACTATTATCTGATGATTTTGAGCCACAGCTTTCTGATT 1765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 GAGATGTTAAGTCATCAAACATACTATTATCTGATGATTTTGAGCCACAGCTTTCTGATT 1762
Query 1766 TTGGACTTGCAAGGTGGGCGTCTATATCTACGACACACATAATCTGCTCTGATGTCGCGG 1825
|||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1763 TTGGGCTTGCGAGGTGGGCGTCTATATCTACAACACACATAATCTGCTCTGATGTCGCTG 1822
Query 1826 GAACTTTTGGATACTTGGCTCCAGAGTACTTCATGTATGGTAAGGTGAATGATAAGATAG 1885
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1823 GAACTTTTGGATACTTGGCTCCAGAATACTTCATGTATGGTAAGGTGAACGATAAGATAG 1882
Query 1886 ATGTGTATGCATTCGGCGTTGTTCTCCTCGAGTTACTTTCGGGAAGAAAACCGATTAGCA 1945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1883 ATGTGTATGCATTCGGCGTTGTTCTCCTCGAGTTACTTTCGGGAAGAAAACCGATTAGCA 1942
Query 1946 GCGGATGTCCAAAGGGACAAGAGAGTCTAGTCATGTGGGCCAAACCAATTCTAGATGATG 2005
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1943 GTGGATGTCCAAAGGGACAAGAGAGTCTAGTCATGTGGGCCAAACCAATTCTAGATGATG 2002
Query 2006 GAAAGTATTCTCAGTTATTAGACCCGAGTTTGCGGGATAACAACAACAATAATGATGACC 2065
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2003 GAAAGTATTCTCAGTTATTAGACCCGAGTTTGCGGGATAACAACAACAACAATGATGACC 2062
Query 2066 AAATGCAGAGGATGGCGTTAGCTGCTACTCTTTGTATTCGACGTAGTCCTCAAGCTAGAC 2125
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2063 AAATGCAGAGGATGGCGTTAGCTGCTACTCTTTGTATTCGACGTAGCCCTCAAGCTAGAC 2122
Query 2126 CGAAAATGAGCATCGTATTAAAGCTACTTAAAGGTGATGAAGACACGCTTGAGTGGGCAA 2185
| ||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||
Sbjct 2123 CAAAAATGAGCATCGTATTAAAGCTGCTTAAAGGTGATGAAGAAACACTTGAGTGGGCAA 2182
Query 2186 TGCAGCAAGTGAATAGTTCATCAGAGGAGTCAGAGATGCTCAAAGATGAGCAATGCCAAA 2245
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2183 TGCAACAAGTGAGTAGTTCATCAGAGGAGTCAGAGATGCTCAAAGATGAGCAATGCCAAA 2242
Query 2246 GATCTAACTTGCAATCACACCTTAACTTAGCACTTCTTGATGTTGAAGATGACTCAATCT 2305
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2243 GATCAAACTTGCAATCACACCTTAACTTAGCACTTCTTGATGTTGAAGATGACTCGATCT 2302
Query 2306 CCATGGGAAGCATTGAGCAAGGTGTCTCTGTTGAGGATTATCTAAAAGGTAGGACAAGCC 2365
|||||||||| || |||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 2303 CCATGGGAAGTATCGAGCAAGGCGTCTCTGTTGAGGATTATCTAAAAGGCAGGACAAGCC 2362
Query 2366 GTTCTTCGAGCTTCGACTAA 2385
||||||||||||||||||||
Sbjct 2363 GTTCTTCGAGCTTCGACTAA 2382
Score = 1779 bits (963), Expect = 0.0
Identities = 1135/1212 (94%), Gaps = 35/1212 (3%)
Strand=Plus/Plus
Query 8 ATGAGGTAGACGGTGACGCATGGCTTTCGGATTTAGTTGACGTGTCGTTTCTCGCTACTA 67
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 29 ATGAGGTAGACGCTGACGCATGCCTTTCGGATTTAGTTGACGTGTCGTTTCTCGCTACTA 88
Query 68 AAACGGCAGAACAATCAGAGATGATAGAAACCGGCGGAGATAAACAGAGCTCCGTCGAGG 127
|||| | | |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 89 AAAC-G--G------CAGAGATGATAGAAACCGGCGGAGATAAACGGAGCTCCGTCGAGG 139
Query 128 -A--AGGATGTGGTGGCCGTACGATTCTTGTCGGCGTGAAGCTTGACGCTCCGAGCAGAG 184
| |||| | ||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 140 AAGGAGGAGGAGGTGGTCGTACGATTCTTGTCGGCGTGAAGCTTGATGCTCCGAGCAGAG 199
Query 185 AGTTACTCACTTGGGCTCTGGTTAAAGTCGCTGAGCCTGGTGATACTGTGATCGCTCTTC 244
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 200 AGTTACTCACTTGGGCTTTGGTTAAAGTCGCTGAGCCTGGTGATACTGTGATCGCTCTTC 259
Query 245 ATATCCTTGGAAATGAGATTGTGGATCGCGCAGGGAACTCTTCGCTTCTCTCTCTGGTTA 304
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
Sbjct 260 ATATCCTTGGAAATGAGATTGTGGATCGAGCAGGGAACTCTTCGCTTCTATCTCTGGTCA 319
Query 305 GAACTTTCGACTCTGTTCTTGACGTTTATGAAGGTTTCTGCAATTTGAAACAGGTGGATC 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 AAACTTTCGACTCTGTTCTTGACGTTTATGAAGGTTTCTGCAATTTGAAACAGGTGGATC 379
Query 365 TGAAGCTGAAGCTATGTCGTGGTTCCTCTGCTCGAAAGATTTTAGTTAGGGAAGCGAAAT 424
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 380 TGAAGCTGAAGCTATGTCGTGGTTCCTCTGCTCGAAAGATTATAGTTAGAGAAGCGAAAT 439
Query 425 CGTTTTCTGCAACGAAAGTTTTAGTTGGGATTTCAAAAAGTCACCACGCGATTCGTTCAT 484
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 440 CGTTTTCTGCAACGAAAGTTTTAGTTGGGATTTCTAAAAGTCACCACACGATTCGTTCAT 499
Query 485 CAGCTTCTGTAGCTAAGTACATAGCGAAGAAACTATCAAAGGATTGTTGGGTTATTGCTG 544
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 CAGCATCTGTAGCTAAGTACATAGCGAAGAAACTATCAAAGGATTGTTGGGTTATTGCTG 559
Query 545 TAAACAATGGTAAAATCTTGTTCCAAAAGGAAGGTTCTCCATCATCTACCATTAATCAAT 604
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 560 TAAACAACGGTAAAATCTTGTTCCAAAAAGAAGGTTCTCCATCATCTACCATTAATCAAT 619
Query 605 CTCAAGTGGTTGAAGAAACTGTTA-TTGGGTTTGGTTATATAGGAAAGGAAGATGTTCGG 663
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 620 CTCAAGTGGTTGAAGAAACTGTTAATTGGGTTTGGTT-TATAGGAAAGGAAGATGTTCGG 678
Query 664 AGGATTACTTTGTTGAATGTGCTTCAGAGATCTGTTACATTGAATAAGACTACTAAAGTA 723
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 679 AGGATTACTTTGTTGAATGTGCTTCAGAGATCAGTTACATTGAATAAGACTACTAAAGTA 738
Query 724 GTTAGCCATTCTGAGGAAGATTCTAACTCTAAGGAGGAGGAGGAGGATCAAGCCTGTGGC 783
||||||||||||||||||||||| | |||||||| || ||||||||| || |||||
Sbjct 739 GTTAGCCATTCTGAGGAAGATTC---C---AAGGAGGATGATGAGGATCAATCCGGTGGC 792
Query 784 CAGAATCTACGGCAAGTCTTAGCGGCTGCTCGTTTGGAGAATTGCTCGGTTTGTGGTTTT 843
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 793 CAGAATCTACGGCAAGTCTTAGCCGCTGCTCGTTTGGAGAATTGCTCGGTTTGTGGTTCG 852
Query 844 GATTCTTTGTCTCCGAACGATACAACTACTCCTGGAAAGTTGTCTGGAGCTTCAGATTTT 903
|||||||||||||| ||| ||||||| ||||||||||||||||||||||| |||||||||
Sbjct 853 GATTCTTTGTCTCCCAACAATACAACAACTCCTGGAAAGTTGTCTGGAGCATCAGATTTT 912
Query 904 GATAGGAGTGAAGATGATGATGAGTGCAACAAAGCAATGGAGATTGTGCCTGTGAATGGT 963
||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||
Sbjct 913 GATAGGAGTGAAGATGATGATGAGTGCCACAAAGAAATGGAGATTGTACCTGTGAATGGT 972
Query 964 TCAGAAGATTCAGGCGGTTCTGTAACTATGTTGGTTAGGAAATTGCCTGAACCTAGACCA 1023
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 973 CCAGAAGATTCAGGCGGTTCTATTACTATGTTGGTTAGGAAATTGCCTGAACCTAGACCA 1032
Query 1024 GGTTGGCCTTTGCTTCGTCGTGCTGTTTCTACATTAGGACAATCTGTTACTCCTCATA-A 1082
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1033 GGTTGGCCTTTGCTTCGTCGTGCTGTTTCTACGTTAGGACAATCTGTTACTCCTCATAGA 1092
Query 1083 -----G---A------TACCGGTAGTTCAATGGGCTTTGAAGCTTCCTCCTAGGGATACT 1128
| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1093 CCTTCGTCTAAACAGATACCGGTAGTTCAATGGGCTTTGAAGCTTCCTCCTAGGGATACT 1152
Query 1129 AAGCAACTTGGTTATGATTCTTCTGAAGATAATTTGTCAACCTTAAACGCACTTGTTCCA 1188
||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||
Sbjct 1153 AAGCAACTTGGTTATGATTATTCTGAAGATAATTTGTCAAGTTTAAACGCAATTGTTCCA 1212
Query 1189 TTTGGTATCAAC 1200
||||||||||||
Sbjct 1213 TTTGGTATCAAC 1224
> Ahg472395 jgi|Araly1|472395|fgenesh2_kg.1__2349__AT1G21590.1
Length=2784
Score = 935 bits (506), Expect = 0.0
Identities = 947/1158 (82%), Gaps = 38/1158 (3%)
Strand=Plus/Plus
Query 1242 ATTGCCAGAGGAAT-TAGAGGGACTTTATG-AGAGGTTCTCTTCAACTTGCCGGTTTTTC 1299
||| ||||| |||| ||||||| ||| | | | ||| |||| | |||||| ||||||
Sbjct 1318 ATTTCCAGA-GAATGTAGAGGGCCTTCAGGCA-AGGATCTCCACTTCTTGCCAGTTTTTT 1375
Query 1300 AAGTACAAGGAACTCGTTTCAGTGACATCGAATTTCTCCGCTGATAATTTTATTGGGAAA 1359
|||||||||||||| || || |||||||| ||||||| ||||||||||| || || |||
Sbjct 1376 AAGTACAAGGAACTTGTGTCGGTGACATCCAATTTCTGTGCTGATAATTTCATCGGAAAA 1435
Query 1360 GGAGGCAGCAGCCGGGTTTTTAGAGGTTGTTTGTCCAATGGAAGAGTGGTTGCTGTGAAG 1419
|||||||||||||||||||||||||||| | || |||||||||||| |||||| |||||
Sbjct 1436 GGAGGCAGCAGCCGGGTTTTTAGAGGTTATCTGCCCAATGGAAGAGAGGTTGCAGTGAAA 1495
Query 1420 ATTCTCAAGCAAACCGAAG-ATGTCTTGAATGACTTCGTGGCTGAGATTGAGATCATCAC 1478
|||||||| ||||||| || ||||||||| || || ||||| |||||||| || |||||
Sbjct 1496 ATTCTCAAACAAACCG-AGTGTGTCTTGAAGGATTTTGTGGCAGAGATTGACATTATCAC 1554
Query 1479 AACATTACACCATAAGAATATTATCTCCCTCTTAGGATT-TTGCTTTGAAGACCATAACC 1537
||| || ||||||||||| |||| ||||| ||||| || |||||||||| || |||| |
Sbjct 1555 AACCTTGCACCATAAGAACGTTATTTCCCTTTTAGG-TTATTGCTTTGAAAACAATAA-C 1612
Query 1538 TT-TTACTTGTATACAATTATCTCTCAAGAGGAAGCCTTGAAGAGAACCTTCATGGAAAC 1596
|| ||||| || ||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 1613 TTGTTACTGGTGTACAATTATCTCTCAAGAGGAAGCCTTGAAGAGAATCTTCACGGCAAC 1672
Query 1597 AAGAAAGATCC-GCTTGCATTTTGTTGGAGCGAGAGGTATAAAGTGGCTGTGGGAGTAGC 1655
|| ||||| || | |||||||| |||||| |||||| ||||| ||||| |||||| ||||
Sbjct 1673 AAAAAAGA-CCTGGTTGCATTTCGTTGGAACGAGAGATATAAGGTGGCCGTGGGAATAGC 1731
Query 1656 AGAGGCATTGGACTATCTGCATAATACTGCTTCGCAACCCGTCATCCACAGAGATGTTAA 1715
||||| ||||||||||||||||| | |||| | ||||| ||||| ||||||||||||||
Sbjct 1732 TGAGGCGTTGGACTATCTGCATAACAGTGCTCCACAACCTGTCATTCACAGAGATGTTAA 1791
Query 1716 GTCATCAAACATACTATTATCTGATGATTTTGAGCCACAGCTTTCTGATTTTGGACTTGC 1775
||||||||||||| |||| ||||||||||||||| |||| |||||||||||||| |||||
Sbjct 1792 GTCATCAAACATATTATTGTCTGATGATTTTGAGGCACAACTTTCTGATTTTGGGCTTGC 1851
Query 1776 AAGGTGGGCGTCTATA-TCTACGACACACATAATCTGCTCTGATGTCGCGGGAACTTTTG 1834
|| ||||||||| | | || || || || ||||| |||||||||||||| || || ||||
Sbjct 1852 AAAGTGGGCGTC-AGAATCCACAACTCAAATAATATGCTCTGATGTCGCAGGCACCTTTG 1910
Query 1835 GATACTTGGCTCCAGAGTACTTCATGTATGGTAAGGTGAATGATAAGATAGATGTGTATG 1894
| ||||| |||||||||||||| |||||||||||| |||| ||||||||||||| ||||
Sbjct 1911 GCTACTTAGCTCCAGAGTACTTTATGTATGGTAAGATGAACAATAAGATAGATGTCTATG 1970
Query 1895 CATTCGGCGTTGTTCTCCTCGAG-TTACTTTCGGGAAGAAAACCGATTAGCAGCGGATGT 1953
||| ||| ||||| ||||||||| ||| |||| |||||||||||||||| |||| || |
Sbjct 1971 CATACGGGGTTGTACTCCTCGAGCTTA-TTTCTGGAAGAAAACCGATTAATAGCGAATCT 2029
Query 1954 CCAAAGGGACAAGAGAGTCTAGTCATGTGGGCCAAACCAATTCTAGATGATGGA-AAGTA 2012
||||||| ||||| ||||| || |||||||| || |||||||| |||||| | || ||
Sbjct 2030 CCAAAGGCTCAAGACAGTCTTGTTATGTGGGCGAAGCCAATTCTGGATGATAAAGAA-TA 2088
Query 2013 TTCT-CAGTTATTAGACCCGAGTTTGCGGGATAACAACAACAATAATGATGACCAAATGC 2071
|| | ||| |||| ||| | ||||||| ||| ||||||| | | ||||| |||
Sbjct 2089 TT-TACAGCTATTGGACTCTAGTTTGCAAGATGACAACAA---TG--GC-GACCAGATGG 2141
Query 2072 AGAGGATGGCGTTAGCTGCTACTCTTTGTATTCGACGTAGTCCTCAAGCTAGACCGAAA- 2130
|||||||||||||||| || ||||||||||| ||| || |||||| |||| || ||
Sbjct 2142 AGAGGATGGCGTTAGCAGCCACTCTTTGTATAAGACATAACCCTCAATCTAGGCC-AACG 2200
Query 2131 ATGAGCATCGTATTAAAGCTACTTAAAGGTGATGAAGACACGCTTGAGTGGGCAATGC-A 2189
||| | || || |||||||| ||||||||||||| ||| | ||| | | ||||| || |
Sbjct 2201 ATGGGAATGGTCTTAAAGCTTCTTAAAGGTGATGCAGAGATGCTAAAATTGGCAAAGCTA 2260
Query 2190 GCAAGTGAATAGTTCATC-AGAGGAGTCAGAGATGCTCAAAGATGAGCAA-TGCCAAAGA 2247
||||| | || ||| ||| || ||| || | ||||| |||||| || ||| | |
Sbjct 2261 -CAAGTTAGTAAC-CATTTAGAAGATTCAAAGCTACTCAAGGATGAGAAACTGCGGAGG- 2317
Query 2248 TCTAA-CTTGCAATCACACCTTAACTTAGCACTTC-TTGATGTTGAAGATGACTCAATCT 2305
||||| || ||| ||||| || ||| ||||| ||| |||| | ||||||||||| | |
Sbjct 2318 TCTAATCT-GCAGTCACATCTAAACCTAGCA-TTCCTTGACATGGAAGATGACTCTCTTT 2375
Query 2306 CCATGGGAAGCATTGAGCAAGGTGTCTCTGTTGAGGATTATCTAAAAGGTAGGACAAGCC 2365
||||||| ||||| |||||||| |||| || ||||| ||||| ||||| ||||||||||
Sbjct 2376 CCATGGGGAGCATGGAGCAAGGCATCTCCGTGGAGGAGTATCTTAAAGGCAGGACAAGCC 2435
Query 2366 GTTCTTCGAGCTTCGACT 2383
|||| ||||||||| |||
Sbjct 2436 GTTCATCGAGCTTCAACT 2453
> Ahg951209 jgi|Araly1|951209|scaffold_803096.1
Length=2169
Score = 178 bits (96), Expect = 2e-43
Identities = 366/492 (74%), Gaps = 36/492 (7%)
Strand=Plus/Plus
Query 1549 TACAATTATCT-CTCAAGAGGAAGCCTTGAAGAGAACCTTCATGGAAACAAGAAAG-ATC 1606
||| ||||||| | || |||||||||||||||||||||||||||| || | ||||| ||
Sbjct 1329 TACGATTATCTAC-CACGAGGAAGCCTTGAAGAGAACCTTCATGGTAATA-GAAAGGATG 1386
Query 1607 CGCTTGCATTTTGTTGGA-GCGAGAGGTATAAAGTGGCTGTGGGAGTAGCAGAGGCATTG 1665
| |||| | ||| | ||||| ||||| ||||| ||||| || || ||||| ||
Sbjct 1387 CAAAAAAATTTGGCTGGCTG-GAGAGATATAAGGTGGCAGTGGGTGTTGCCGAGGCGTTA 1445
Query 1666 GACTATCTGCATAATACTGCTTC-GCAACCCGTCATCCACAGAGATGTTAAGTCATCAAA 1724
|||||||| ||||||||| | | || | || || ||| | ||||| || || || ||
Sbjct 1446 GACTATCTACATAATACT-CATGAGCCAGAAGTGATTCACCGGGATGTGAAATCTTCTAA 1504
Query 1725 CATACTATTATCTGATGATTTTGAGCCACAGCTTTCTGATTTTGGACTT-GCAAGGTGGG 1783
| || || | |||||||||||||||||||| || ||||| ||| || || || | ||
Sbjct 1505 TGTTCTTTTGGCAGATGATTTTGAGCCACAGCTCTCAGATTTCGGA-TTCGCCAGCTTGG 1563
Query 1784 CGTCTA-TATCTACGACA-CACATAATCTGCTCTG-ATGTCGC-GGGAACTTTTGGATAC 1839
| || | || || || || ||| | | | | | || | || |||| | ||||| |||
Sbjct 1564 CTTCAAGTA-CTTCG-CAGCACGTGG-CGGGTGGGGATATTGCTGGGA-CATTTGGTTAC 1619
Query 1840 TTGGCTCCAGAGTACTTCATGTATGGTAAGGTGAAT-GATAAGATAGATGTGTATGCATT 1898
| || ||||||||||||||| | ||||| || || || ||||| ||||| ||||| ||
Sbjct 1620 CTAGCACCAGAGTACTTCATGCACGGTAAAGT-AACCGACAAGATCGATGTCTATGCTTT 1678
Query 1899 CGGCGTTGT-TCTCCTCGAGTTACTTTCGGGAAGAAAACCGAT-TAGCAG-CGG--ATGT 1953
|| ||||| | | |||||| | || ||||| |||||||| || | || | || | ||
Sbjct 1679 TGGTGTTGTAT-TGCTCGAGCTCCTATCGGGTAGAAAACCAATCT-GC-GTCGACCA-GT 1734
Query 1954 CCAAAGGGACAAGAGAGTCTAGTCATGTGGGCCAAACC-AATTCTAGATGA-TGGAAAGT 2011
| ||||| || ||||| || ||| ||||||| ||||| ||||||||| || ||||||||
Sbjct 1735 CTAAAGGC-CAGGAGAGCCTTGTCTTGTGGGC-AAACCCAATTCTAGA-GAGTGGAAAGT 1791
Query 2012 ATT-CTCAGTTA 2022
|| ||||||||
Sbjct 1792 -TTGCTCAGTTA 1802
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89854887955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5