BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G77390.1 Length=1477 Score E Sequences producing significant alignments: (Bits) Value Ahg476903 jgi|Araly1|476903|fgenesh2_kg.2__2033__AT1G77390.1 2074 0.0 > Ahg476903 jgi|Araly1|476903|fgenesh2_kg.2__2033__AT1G77390.1 Length=1428 Score = 2074 bits (1123), Expect = 0.0 Identities = 1326/1422 (93%), Gaps = 22/1422 (2%) Strand=Plus/Plus Query 64 tctcactctcGCAGAAGAGAAACCCTAAATCTCACCGGAAAACGAGAACGCCGAGCCTGA 123 |||| |||| |||||| |||||||||||||||||||||||||||| ||||||||||| | Sbjct 16 TCTCTCTCT-GCAGAACAGAAACCCTAAATCTCACCGGAAAACGATAACGCCGAGCC-G- 72 Query 124 GATATTTTCGATTGCTTCATCAACAATGTCTTCTTCGTC--GA--G-A-AATCTATCTCA 177 || | |||| ||| |||| |||||||||||||||||||| | | | || ||| |||| Sbjct 73 GAGA-TTTCCATTTCTTCTTCAACAATGTCTTCTTCGTCTTCATCGAAGAACCTACCTCA 131 Query 178 GGAGAATCCGATTCCTCGTCCGAACTTAGCCAAGACTCGAACCTCACTCCGCGATGTTGG 237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 132 GGAGAATCCGATTCCTCGTCCGAACTTAGCCAAGACTCGAACCTCACTCCGCGATGTTGG 191 Query 238 AAACCGTCGTGCTCCCCTCGGCGACATCACAAATCAGAAGAATGGATCTAGAAATCCTTC 297 ||||||||||| ||| ||||||||||||||||||||||||| |||||| |||||| |||| Sbjct 192 AAACCGTCGTGTTCCTCTCGGCGACATCACAAATCAGAAGACTGGATCAAGAAATTCTTC 251 Query 298 ACCGTCGTCTACTCTGGTGAATTGTTCAAATAAGATCGGCCAATCTAAGAAAGCACCAAA 357 |||||||||||||||| ||||||| ||||||||| |||||| ||||||||| |||| Sbjct 252 TTCGTCGTCTACTCTGGTTCATTGTTCGAATAAGATCTCCCAATCGAAGAAAGCATCAAA 311 Query 358 ACCTGCTTTATCTCGTAATTGGAATTTGGGAATTCTCGATTCCGGTTTACCTCCCAAGCC 417 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 312 GCCTGCTTTATCTCGTAATTGGAATTTGGGAATTCTCGATTGCGGTTTACCTCCCAAGTC 371 Query 418 AAATGCGAAATCAAACATAATCGTTCCTTACGAAGACACCGAATTG-CTCCAAAGCGATG 476 ||||||||| |||||||||||||||||||||||||||||||||||| || |||| ||||| Sbjct 372 AAATGCGAATTCAAACATAATCGTTCCTTACGAAGACACCGAATTGCCT-CAAATCGATG 430 Query 477 ATAGTCTTCTATGTTCTTCACCTGCATTATCCT-TGGATGCCTCTCCTACTCAATCTGAC 535 |||||||||||| ||| ||||||| ||||| || | ||||||||||||||||| || ||| Sbjct 431 ATAGTCTTCTATCTTCATCACCTGGATTAT-CTGTTGATGCCTCTCCTACTCACTCAGAC 489 Query 536 CCGTCAATTTCCACTCATGACTCTTTGACGAACCACGTTGTAGATTACATGGTCGAGAGC 595 |||||||||||||||||||||||| | | || |||| ||||||| |||||||||||||| Sbjct 490 CCGTCAATTTCCACTCATGACTCTCTCAAGAGCCACATTGTAGAACACATGGTCGAGAGC 549 Query 596 ACTACtgatgatggaaatgatgatgatgatgatgaGATTGTTAACATTGATAGTGACTTG 655 | |||||||||||| | | |||||||||||||||||||||||||||||||||||||| Sbjct 550 AGTACTGATGATGG--A--A--ATGATGATGATGAGATTGTTAACATTGATAGTGACTTG 603 Query 656 ATGGATCCACAGCTTTGTGCTTCTTTTGCTTGTGATATCTACGAGCATTTGCGTGTATCT 715 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| Sbjct 604 ATGGATCCACAGCTTTGTGCTTCCTTTGCTTGTGATATCTACGAGCATTTGCGTGCATCT 663 Query 716 GAGGTGAACAAAAGACCGGCTCTAGATTACATGGAAAGAACTCAGTCAAGCATCAATGCT 775 ||||| || ||||||||||| ||||||||||||||||||| ||||| || |||||||||| Sbjct 664 GAGGTAAAGAAAAGACCGGCCCTAGATTACATGGAAAGAATTCAGTTAAACATCAATGCT 723 Query 776 AGCATGCGTTCTATACTGATTGACTGGCTTGTGGAGGTTGCTGAAGAGTATAGGCTTTCG 835 ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 724 AGCATGCGTTCTATACTCATTGACTGGCTCGTGGAGGTTGCTGAAGAGTATAGGCTTTCG 783 Query 836 CCCGAGACGTTGTATTTGGCAGTAAACTACGTTGATCGGTATCTTACAGGAAATGCAATC 895 ||||||||||||||||||||||| ||||| || |||||||||||||| || |||||||| Sbjct 784 CCCGAGACGTTGTATTTGGCAGTGAACTATGTAGATCGGTATCTTACGGGCAATGCAATT 843 Query 896 AACAAGCAAAATCTGCAGCTACTTGGTGTTACCTGCATGATGATAGCAGCAAAATATGAA 955 |||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||| Sbjct 844 AACAAGCAAAATCTGCAGTTACTTGGTGTTGCCTGCATGATGATCGCAGCAAAATATGAA 903 Query 956 GAAGTGTGTGTGCCGCAAGTGGAGGATTTCTGTTACATCACTGATAACACATACTTAAGA 1015 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 904 GAAGTGTGTGTGCCCCAAGTGGAGGATTTCTGTTACATCACTGATAACACATACTTAAGA 963 Query 1016 AATGAGCTTTTGGAGATGGAGTCTTCTGTTCTGAACTACTTGAAGTTCGAATTAACAACT 1075 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 964 AACGAGCTTTTGGAGATGGAGTCTTCTGTTCTGAACTACTTGAAGTTCGAATTAACAACT 1023 Query 1076 CCAACAGCAAAATGTTTCTTGAGGCGCTTTCTTCGTGCTGCTCAAGGCAGAAAGGAGGTA 1135 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1024 CCGACAGCAAAATGTTTCTTGAGGCGCTTTCTTCGTGCTGCTCAAGGCAGAAAGGAGGTA 1083 Query 1136 CCATCACTGCTGTCTGAGTGTCTGGCCTGCTATCTCACCGAATTATCGCTGTTAGATTAC 1195 ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 1084 CCATCACTGCTGTCTGAATGTCTGGCCTGCTATCTCACTGAATTATCGCTGTTAGATTAC 1143 Query 1196 GCTATGCTTCGATACGCTCCATCACTTGTTGCAGCCTCTGCAGTTTTCTTGGCACAATAC 1255 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1144 GCTATGCTTCGATACGCTCCATCACTTGTTGCAGCCTCTGCAGTTTTCTTGGCACAATAC 1203 Query 1256 ACT-CTACACCCTTCAAGAAAACCATGGAATGCTACGCTAGAGCATTACACATCGTACAG 1314 | | |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 1204 A-TACTACACCCTTCAAGAAAACCATGGAACGCTACACTAGAGCATTACACATCGTACAG 1262 Query 1315 GGCTAAACATATGGAAGCATGCGTTAAGAATCTTCTTCAGCTGTGTAATGAGAAACTCTC 1374 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1263 GGCTAAACATATGGAAGCATGCGTTAAGAATCTTCTTCAGCTGTGTAATGAGAAACCCTC 1322 Query 1375 ATCTGATGTGGTTGCAATCAGAAAGAAGTACAGTCAACACAAATACAAGTTTGCAGCAAA 1434 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1323 ATCTGATGTGGTTGCAATCAGAAAGAAGTACAGTCAACACAAATACAAGTTTGTAGCAAA 1382 Query 1435 GAAGCTTTGTCCCACGTCACTACCGCAAGAGCTTTTCCTCTG 1476 ||||||||| ||||| ||||||||||||||||| |||||||| Sbjct 1383 GAAGCTTTGCCCCACATCACTACCGCAAGAGCTCTTCCTCTG 1424 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55268945495 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5