BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G77420.1 Length=1565 Score E Sequences producing significant alignments: (Bits) Value Ahg476907 jgi|Araly1|476907|fgenesh2_kg.2__2037__AT1G77420.1 2080 0.0 > Ahg476907 jgi|Araly1|476907|fgenesh2_kg.2__2037__AT1G77420.1 Length=1497 Score = 2080 bits (1126), Expect = 0.0 Identities = 1347/1447 (93%), Gaps = 42/1447 (3%) Strand=Plus/Plus Query 126 TTGAATCTCCAGAATCCATGGATCGTGCTTTAAC-TCCGCGTTTTGATACTCCAGCTACT 184 |||||||||||||||||||||||||||||||||| ||| ||||||| | |||| Sbjct 84 TTGAATCTCCAGAATCCATGGATCGTGCTTTAACTTCC-CGTTTTG-------A--TACT 133 Query 185 CTCTCCCCTTTCCGATACCGATATGGGAGCTCTCTGGCCATCACTCGACGATTCGCGCCG 244 |||| |||||||||||||||| || ||||||||||| ||||||||||||||||||||||| Sbjct 134 CTCTACCCTTTCCGATACCGACATAGGAGCTCTCTGACCATCACTCGACGATTCGCGCCG 193 Query 245 GCGATTGTTTGCGCGAAACGATCTCCGATCGATGGAGTGAGCGACGAGCTGAATCTGATT 304 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 194 GCGATTGTTTGCGCGAAACGATCTCCGATCGATGGAGTGAGCGACGAGCTGAATCTGATC 253 Query 305 GCTTCACAGAACTTAGATCAAGCTCCCGCACGAAGACTAGCCCGTTCCGCTTTTGTTGAC 364 ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| Sbjct 254 GCTTCACAGAACTTAGATCAAGCTCCCGCACGAAGACGAGCCCGTTCCGCATTTGTTGAC 313 Query 365 TTGCAGCTTCAGCTGGATCACTGCTTGTTCAAGAAAGCTCCGAGTGGGATCAGAACAGAG 424 ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| Sbjct 314 TTGCAGCTTCAGCTGGATCACTGCTTGTTCAAGAAAGCTCCGATTGGAATCAGAACAGAG 373 Query 425 GAGTGGTATGAGAGAAATTCGAAAGGGGAAGATATTTTCTGCAAGAGTTGGTTGCCGAAA 484 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 374 GAGTGGTATGAGAGAAATTCGAAAGGGGAAGAAATTTTCTGCAAGAGTTGGTTGCCGAAA 433 Query 485 TCCGGCGACGAAATCAAAGCTGCTGTATGTTTCTGTCATGGCTATGGAAGCACTTGCACT 544 |||||||| |||||||||||||| || |||||||||||||||||||| |||||||||||| Sbjct 434 TCCGGCGAAGAAATCAAAGCTGCGGTGTGTTTCTGTCATGGCTATGGCAGCACTTGCACT 493 Query 545 TTCTTCTTCGATGGTATAGCAAAGCAAATAGCAGGTTTTGGTTATGGGGTTTATGCTATA 604 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 494 TTCTTCTTCGATGGTATAGCAAAGCAAATAGCAGGTTTTGGTTATGGAGTTTATGCTATA 553 Query 605 GACCATCCTGGTTTTGGTTTATCAGATGGTTTACATGGTCACATTCCAAGTTTTGATGAC 664 ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| Sbjct 554 GACCATCCTGGTTTTGGCCTATCAGATGGTTTACATGGTCACATCCCAAGTTTTGATGAC 613 Query 665 TTAGCAGACAATGCTATTGAACAGTTCACCAAAATGAAAGGGAGATCGGAATTGAGAAAT 724 ||||| || |||||||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 614 TTAGCTGAGAATGCTATTGAACAGTTCACCAAAATGAAAGGGAGACCTGAATTGAGAAAT 673 Query 725 TTGCCCCGGTTTTTGCTGGGACAGTCAATGGGAGGAGCAGTTGCCTTAAAAATTCATCTT 784 |||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 674 TTGCCCCGGTTTCTGCTCGGACAGTCAATGGGAGGAGCAGTTGCCTTGAAAATTCATCTG 733 Query 785 AAAGAACCTCAAGCTTGGGATGGTCTTATCCTTGTCGCTCCAATGTGTAAGATTTCAGAA 844 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 734 AAAGAACCTCAAGCTTGGGATGGTCTTATCCTTGCCGCTCCAATGTGTAAGATTTCAGAA 793 Query 845 GATGTAAAACCTCCTCCACTAGTCTTGAAGACGTTAATCTTGATGTCGACACTATTTCCC 904 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 794 GATGTAAAACCTCCTCCACTAGTCTTGAAGGCGTTAATCTTGATGTCGACACTATTTCCC 853 Query 905 AAAGCAAAGCTCTTTCCAAAGAGAGACTTGAGCGACTTCTTCTTCAGGGACCTGAGTAAA 964 ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 854 AAAGCGAAGCTCTTTCCAAAGAGAGACTTGAGCGACTTCTTCTTCAGGGACCCGAGTAAA 913 Query 965 AGAAAATTGTGTGAGTACGATGTGATATGCTACGATGATCAAACACGTCTCAAAACTGCT 1024 |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 914 AGAAAATTGTGTGAGTACGATGTGATTTGCTACGATGATCAAACACGTCTAAAAACTGCT 973 Query 1025 GTTGAACTTCTAAATGCAACAAGAGACATTGAGATGCAAGTTGACAAGGTCTCGTTGCCA 1084 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 974 GTTGAACTTCTAAATGCAACAAGAGACATTGAGATGCAAGTTGACAAGGTCTCGTTGCCG 1033 Query 1085 CTGTTGATACTTCATGGAGACACTGATAAAGTCACAGATCCCACTGTGAGTAAATTCCTT 1144 ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| Sbjct 1034 CTGTTGATACTTCATGGAGACGCTGATAAAGTCACAGATCCCACTGTGAGCAAATTCCTT 1093 Query 1145 CACAAACATGCAGTCAGCCAAGACAAGACTCTAAAACTCTATCCAGGTGGCTACCATTGC 1204 ||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1094 CACGAGCATGCAATCAGCCAAGACAAGACTCTAAAACTCTATCCAGGTGGCTACCATTGC 1153 Query 1205 ATTCTAGAAGGTGATACAGACGAAAATATTTTCACTGTAATCAATGACATCGTTGCTTGG 1264 |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 1154 ATTCTAGAAGGTGATACAGACGAAAATATTTTCACTGTAATCAACGACATAGTTGCTTGG 1213 Query 1265 CTCGATGCCCGCGTTGATCCCAAGTAAAGTGAGATCATCTCTCCACAAACCTATACTTAT 1324 |||||||||||||||| |||||||||||||||||| || |||||||||||||||||| || Sbjct 1214 CTCGATGCCCGCGTTGCTCCCAAGTAAAGTGAGATTATATCTCCACAAACCTATACTCAT 1273 Query 1325 TATTGTCTTCTGAATACTGTCGAGTCTCTGTGATTAAACATCCGGATAAGAAGAAAAAAT 1384 |||||||||||||| | |||||||||||| |||||||| ||| | | | Sbjct 1274 TATTGTCTTCTGAAAAATGTCGAGTCTCTATGATTAAAGATC----T--G---------T 1318 Query 1385 AGATATGTGGCTTACAATGAATACACAACCTTAGCCGTTG-TT--T--GCTTAGCTAGTG 1439 | | |||||||||||||||||||||| ||| ||| || | |||||||||||| Sbjct 1319 -G----G---CTTACAATGAATACACAACCTTGGCCCTTGCTTGCTTAGCTTAGCTAGTG 1370 Query 1440 CTTCTAGTGCTACATCAGCCGCATCTTTCGAAGTGTAGTTAGTATTGTTTGGGTGCACAT 1499 | |||| ||||||||||||||||||||| || ||||||||||| ||||||||||||||| Sbjct 1371 CCTCTAAAGCTACATCAGCCGCATCTTTCAAACTGTAGTTAGTAGTGTTTGGGTGCACAT 1430 Query 1500 AAGTCAGGCTCAGAATCAAATTGATGACTGAT-CTC--ATTTGAACCATATTGCTCTGAC 1556 |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| | Sbjct 1431 AAGTCAGGCTCAGAATCAAATTGATGACTGATTCTCTCATTTGAACCATATTGCTCTAAG 1490 Query 1557 AGATCCT 1563 ||||||| Sbjct 1491 AGATCCT 1497 Score = 87.9 bits (47), Expect = 2e-16 Identities = 77/90 (86%), Gaps = 7/90 (8%) Strand=Plus/Plus Query 3 TCGATCATCATTCTGGTAGTTGAAAACTTTgtcgtcgtcgtcgtcgtcgtcgtAGCACGT 62 ||||| |||||||||||||||||| || | | | | | | | ||||||||||||||| Sbjct 1 TCGATTATCATTCTGGTAGTTGAAGAC--T-T-GAAGAC-T-G-AGTCGTCGTAGCACGT 53 Query 63 GTTGCACGTGAGAAATTTCCCGCACAAAAT 92 |||||||||||||||||||||||||||||| Sbjct 54 GTTGCACGTGAGAAATTTCCCGCACAAAAT 83 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58620887055 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5