BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77490.1
Length=1596
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476914 jgi|Araly1|476914|fgenesh2_kg.2__2044__AT1G77490.1 2241 0.0
> Ahg476914 jgi|Araly1|476914|fgenesh2_kg.2__2044__AT1G77490.1
Length=1568
Score = 2241 bits (1213), Expect = 0.0
Identities = 1476/1594 (93%), Gaps = 53/1594 (3%)
Strand=Plus/Plus
Query 27 TATCCAGTTATGAGTGGGTGACTCCAAATAGATCCAACTGGCAACGCATTATTGACACGT 86
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TATCCAGTTATGAGTGGGTGACTCCAAATAGATCCAACTGGCAACGCATTATTGACACGT 60
Query 87 GTC-TTTTCATTTCTCTTCTTCCGGCGTTTTCTCTCCGCCGTTTCGCCACCGTACGTGAC 145
||| |||| | ||||| |||||||||| || ||| | | ||| | ||||||
Sbjct 61 GTCTTTTTTAATTCTC-TCTTCCGGCG-CTT-TCT----C---T--CCA-C---CGTGAC 104
Query 146 AATGTCTGTTTCTCTCTCCGCCGCCTCTCACTTACTCTGTTCCTCCACCAGAGTCTCTCT 205
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 105 AATGGCTGTTTCTCTCTCCGCCGCCTCTCACTTACTCTGTTCCTCCACCAGAGTCTCTCT 164
Query 206 TTCCCCCGCCGTCACCTCTTCGTCCTCGTCCCCTGTCGTTGCTCTTTCTTCCTCTACATC 265
|| ||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||
Sbjct 165 TTTCCCCGCCGTCACCTC--C-TCCTCGTCCCCTGTCGTTGCTCTTTCTTCCTCTTCATC 221
Query 266 GCCACA---------TTCTCTTGGAAGCGTCGCATCTTCTTCTCTGTTTCC-T-CA-CTC 313
|||||| ||||||| |||||||||| ||||||||||||||||| | || | |
Sbjct 222 GCCACATTCTCTGTCTTCTCTTCGAAGCGTCGCGTCTTCTTCTCTGTTTCCTTGCACCAC 281
Query 314 CTCCTTCGTGCTTCAGAAAAAACATCCGATCAATGGGACGAGCACGAGGATGATTTCACC 373
||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 282 CTCCTTCGTTCTTCAGAGAAAACATCCGATCAATGGGACGAGCACGAGGATGGTTTCACC 341
Query 374 AAAATGTGCCGCTTCTGATGCAGCTCAATTGATAAGCGCTAAAGAAGATATCAAAGTTCT 433
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 342 AAAATGTGCGGCTTCTGATGCAGCTCAATTGAGAAGCGCTAAAGAAGATATCAAAGTTCT 401
Query 434 TCTCCGGACTAAGTTTTGCCATCCCATCTTGGTTAGATTGGGGTGGCACGATGCTGGTAC 493
||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct 402 TCTCCGGACTAAGTTTTGCCATCCCATTTTGGTTAGGTTGGGATGGCACGATGCTGGTAC 461
Query 494 -TTATAACAAGAATATTGAGGAGTGGCCACTGAGAGGTGGAGCTAATGGAAGTCTTAGGT 552
|| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 462 ATT-TAACAAGAGCATTGAGGAGTGGCCACAAAGAGGTGGAGCTAATGGAAGTCTTAGGT 520
Query 553 TTGAGGCTGAGCTTAAGCATGCTGCAAATGCTGGTCTGCTTAATGCTTTAAAGCTCATTC 612
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 521 TTGAGGCTGAGCTTAAGCATGCTGCAAATGCCGGTCTGCTTAATGCTTTAAAGCTCATTC 580
Query 613 AGCCTCTCAAAGACAAGTATCCTAACATCTCTTATGCGGACTTATTCCAGTTAGCTAGTG 672
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 AGCCTATCAAAGACAAGTATCCTAACATCTCTTATGCGGACTTATTCCAGTTAGCTAGTG 640
Query 673 CCACAGCAATAGAGGAGGCTGGTGGTCCTGATATCCCGATGAAATATGGGAGAGTTGATG 732
|||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 641 CCACTGCAGTAGAGGAGGCTGGTGGTCCTGAAATCCCGATGAAATATGGGAGAGTTGATG 700
Query 733 TTGTAGCACCTGAACAGTGTCCAGAAGAAGGAAGACTCCCTGATGCTGGACCTCCTTCAC 792
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 701 TCGTAGCACCTGAACAGTGTCCAGAAGAAGGAAGACTCCCTGATGCTGGACCTCCCTCAC 760
Query 793 CAGCTGATCATTTGAGAGATGT-TTTCTACAGAATGGGACTTGATGACAAGGAAATAGTT 851
|||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||
Sbjct 761 CAGCTGATCATTTGAGAGATGTATTT-TACAGAATGGGACTAGATGACAAGGAAATAGTT 819
Query 852 GCCTTGTCTGGTGCACATACCTTAGGGAGAGCCAGACCAGACCGTAGTGGTTGGGGAAAA 911
|||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 820 GCCTTGTCTGGTGCACATACCTTAGGAAGAGCCAGGCCAGACCGTAGCGGTTGGGGAAAA 879
Query 912 CCTGAGACAAAGTACACGAAAACTGGACCTGGAGAAGCAGGAGGACAGTCATGGACAGTG 971
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 880 CCTGAGACAAAGTACACGAAAACTGGACCAGGAGAAGCAGGAGGACAGTCATGGACAGTG 939
Query 972 AAATGGCTCAAGTTCGACAACTCTTATTTCAAGGATATCAAAGAAAAGAGGGACGACGAT 1031
|||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct 940 AAATGGCTTAAGTTTGACAATTCTTACTTCAAGGATATCAAAGAAAAGAGGGACGAAGAT 999
Query 1032 CTTCTGGTGTTACCCACTGATGCGGCGCTATTTGAAGATCCTTCATTCAAGAACTATGCA 1091
||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 1000 CTTCTGGTGTTACCCACTGATGCTGCACTATTCGAAGATCCTTCATTCAAGAACTATGCG 1059
Query 1092 GAGAAGTATGCTGAAGATGTGGCTGCATTTTTCAAGGACTACGCTGAAGCCCATGCCAAG 1151
|||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||
Sbjct 1060 GAGAAGTATGCTGAAGATCCGGCTGCATTTTTCAAGGATTACGCTGAAGCTCATGCCAAG 1119
Query 1152 CTTAGCAATCTCGGTGCAAAATTTGATCCTCCCGAGGGCAT-AGTCATTGAAAACGTTCC 1210
|| ||||||||||| || ||||||||||||||||||||||| | ||||||| |||| |||
Sbjct 1120 CTCAGCAATCTCGGCGCGAAATTTGATCCTCCCGAGGGCATCA-TCATTGACAACGCTCC 1178
Query 1211 AGAGAAGTTCGTAGCTGCAAAGTATTCTACGGGAAAGAAGGAGCTTTCGGATTCGATGAA 1270
||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1179 AGAGAAGTTTGTAGCTGCGAAGTATTCCACGGGAAAGAAGGAGCTTTCGGATTCGATGAA 1238
Query 1271 AAAGAAGATAAGAGCAGAGTATGAAGCAATTGGAGGAAGCCCAGATAAGCCATTACCCAC 1330
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1239 AAAGAAGATAAGAGCAGAGTATGAAGCAATTGGAGGAAGTCCAGATAAGCCATTACCGAC 1298
Query 1331 AAATTACTTCCTCAACATCATAATTGCCATTGGCGTTTTGGTCCTCTTGTCCACTCTCTT 1390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1299 AAATTACTTCCTCAACATCATAATTGCCATTGGCGTTTTGGTCCTCTTGTCCACTCTCTT 1358
Query 1391 TGGTGGTAATAACAACTCCGATTTCTCTGGTTTCTAATTGACAAATTA------T---AT 1441
||||||||||||||||||||||||||||||||||| |||||||||||| | ||
Sbjct 1359 TGGTGGTAATAACAACTCCGATTTCTCTGGTTTCTGATTGACAAATTAGAAAAATTGTAT 1418
Query 1442 ATTTTGATTTCTCTTACCTACATACATAATTACGTGGTGATCATATATTCCTTGCAAACA 1501
||||||||||||||||| || ||||||||| |||||||||||| |||| | |||||||||
Sbjct 1419 ATTTTGATTTCTCTTACGTATATACATAATCACGTGGTGATCAAATAT-CTTTGCAAACA 1477
Query 1502 AAAACATCATTGTTAAAGTTTGCTTGAATAAAATCACCTTATAAATAACATTGTTTATTT 1561
|| |||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1478 AACACATCATTGTTATAGTTTGCTTGAATAAAATCACCTT-TAA-TAACATTGTTTATTT 1535
Query 1562 GGT--TTTTAGAATTTTGAGATTAGTGTGAGTTT 1593
||| ||||||| ||||| |||||||||||||||
Sbjct 1536 GGTGGTTTTAGA-TTTTGGGATTAGTGTGAGTTT 1568
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59801684650
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5