BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77660.1
Length=1765
Score E
Sequences producing significant alignments: (Bits) Value
Ahg339925 jgi|Araly1|339925|fgenesh1_pg.C_scaffold_2002024 1434 0.0
Ahg906352 jgi|Araly1|906352|Al_scaffold_0003_3480 1077 0.0
Ahg472428 jgi|Araly1|472428|fgenesh2_kg.1__2382__AT1G21920.1 797 0.0
Ahg335432 jgi|Araly1|335432|fgenesh1_pg.C_scaffold_1001997 603 2e-171
> Ahg339925 jgi|Araly1|339925|fgenesh1_pg.C_scaffold_2002024
Length=1350
Score = 1434 bits (776), Expect = 0.0
Identities = 847/881 (96%), Gaps = 5/881 (1%)
Strand=Plus/Plus
Query 326 ATGAGCCAAAAGAAACTGACGAGGACTCAATCGTCGTTACTCAGATCATCTCCGACGATT 385
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGCCAAAAGAAACTGACCAGGACTCAATCGTCGTTACTCAGATCATCTCCGACGATT 60
Query 386 CGATCGTCGATCCAAAGCCTTTCTTCAATCACTGAATGTGATGACTTCAACGAAACCTCT 445
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 CGATCGTCGATTCAAAGCCTTTCTTCAATCACTGAATGTGATGACTTCAACGAAATCTCT 120
Query 446 CACCACCGCCGTGAACAAGATCTCGAAGCCGGTGAGAAAGAGGAAAAACAGAGGAGGAGA 505
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 121 CACCACCGCCGTGAACAAGATCTAGAAGCCGGTGAGAAAGAGGAGAAACAGAGGAGGAGA 180
Query 506 AAACCGGTTAAATCATTCGGGTCAATGAACCGAATTAAACCGGGTCTCGCATTCACACTC 565
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 181 AAACCGGTTAAATCATTCGGGTCGATTAACCGAATTAAACCGGGTCTCGCATTCACACTC 240
Query 566 GCTTGTCTCTCTTTCCTGAGTCTCTCATCTTTCTTACTGTTCTTCGTTGATGAGATTTTC 625
|| |||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||
Sbjct 241 GCCTGTCTCTCTTTCCTAAGTCTCTCATCTTTCTTACTATTCTTCATTGATGAGATTTTC 300
Query 626 ACGTCGGAGAATCTCTTACTAGGTTTGATTTTCGTCGCTCTTGCTCTGTTCTTCGCGTCG 685
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 ACGTCGGAGAATCTGTTACTAGGTTTGATTTTCGTCGCTCTTGCTCTGTTCTTCGCATCG 360
Query 686 AGAAACATGGCGGTTATTAACCAAACCGTAATCGCAATCAAGCAGATTCGTGTAAGGTCT 745
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 361 AGAAACATGGCGGTTATTAACCAAACCGTAATCGCAATCAAACAGATTCGCGTAAGGTCT 420
Query 746 CGAATCAAACACAAACCGAAACCGGTTCAATGGTACATCGGAGATTCAAAACCGGAACCG 805
|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 421 CGAATCAAACACAAACATAAACCGGTTCAATGGTACATCGGAGATACAAAACCGGAACCG 480
Query 806 ATCAAAGAAGAAGAAAC-AAGACTTGTCGTTAAAGAAGGAGTTCAAT-TCTTTAGCAATG 863
||||||||||||| || |||||| ||||| |||||||||||||||| | ||||||||||
Sbjct 481 ATCAAAGAAGAAG-CACAAAGACTGGTCGTGAAAGAAGGAGTTCAATAT-TTTAGCAATG 538
Query 864 GAGATTTCTACGAAGGTGAATTCAACAGAGGGAAGTGTAACGGAAGTGGAGTTTATTATT 923
|||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 539 GAGA-TTCTACGAAGGTGAATTCAACAGAGGGAAGTGTAACGGAAGTGGAGTGTACTATT 597
Query 924 ATTACGTTAATGGAAGATATGAAGGAGATTGGATCAATGGAAGGTACGATGGTTATGGAA 983
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 598 ATTTCGTTAATGGAAGATATGAAGGAGATTGGATCAATGGAAGATACGATGGTTATGGAA 657
Query 984 TCGAGTGTTGGTCTAAAGGAAGTAAATATAAAGGACAGTATAAGCAAGGACTTAGACATG 1043
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 658 TCGAGTGTTGGTCTAAAGGAAGTAAATATAAAGGACAGTATAAGCAAGGACTTAGGCATG 717
Query 1044 GTTTTGGAGTTTACTGGTTTTACACCGGAGATTCTTACTCTGGTGAATGGTTTAACGGTC 1103
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 718 GTTATGGAGTTTACTGGTTTTACACCGGAGATTCTTACTCCGGTGAATGGTTTAACGGTC 777
Query 1104 AAAGCCATGGCTTTGGAGTTCAAACTTGTGCTGATGGAAGCTCTTTTGTCGGAGAATTCA 1163
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 AAAGCCATGGCTTTGGTGTTCAAACTTGTGCTGATGGAAGCTCTTTTGTCGGAGAATTCA 837
Query 1164 AATTTGGTGTCAAACATGGACTTGGTTCTTACCATTTCAGG 1204
|||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AATTTGGTGTCAAACATGGACTTGGTTCTTACCATTTCAGG 878
Score = 627 bits (339), Expect = 1e-178
Identities = 373/390 (96%), Gaps = 0/390 (0%)
Strand=Plus/Plus
Query 1202 AGGAATGGAGATAAGTATGCAGGAGAGTATTTTGGAGACAAGATTCATGGATTTGGTGTT 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 AGGAATGGAGATAAGTATGCAGGAGAGTATTTTGGAGACAAGATTCATGGATTTGGTGTT 1020
Query 1262 TACCATTTCGCTAATGGTCACTATTACGAAGGAGCTTGGCATGAAGGTCGTAAACAAGGC 1321
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TACCATTTCGCTAATGGTCATTATTACGAAGGAGCTTGGCATGAAGGTCGTAAACAAGGC 1080
Query 1322 TATGGCACGTATAGATTTAGAACCGGTGATATCAAATCCGGTGAATGGGATGATGGTAAT 1381
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1081 TATGGCACGTATAGATTCAGAACCGGTGATATCAAATCCGGTGAATGGGACGATGGTAAT 1140
Query 1382 CTCGTTAACCATCTTCCTTTAGACTCTGACCCGGTTCGTAGGGCGGTTCAGAGTGCACGA 1441
||||| ||||||||| || ||||||||||||||||||||| |||||||||||||| |||
Sbjct 1141 CTCGTAAACCATCTTTCTCCAGACTCTGACCCGGTTCGTAGAGCGGTTCAGAGTGCTCGA 1200
Query 1442 GAAAGAGCAAAGAATGGAGTGAATCAGAGACGGATCGATGAGCAGGTGATACGAGCTGTG 1501
|| ||||| |||||||||||||||||||||||| |||||||| | |||||||||||||||
Sbjct 1201 GAGAGAGCGAAGAATGGAGTGAATCAGAGACGGGTCGATGAGTATGTGATACGAGCTGTG 1260
Query 1502 GCTGCAGCTAATAAAGCTGCGACGGCTGCTAGAGTTGCAGCTGTGAAAGCAGTTCAAAAT 1561
||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1261 GCTGCGGCCAATAAAGCTGCGACGGCTGCTAGAGTTGCAGCTGTGAAAGCCGTTCAAAAT 1320
Query 1562 CAAATGGATGGTAAAATTTGTGACAATTAA 1591
||||||||||||||||||||||||||||||
Sbjct 1321 CAAATGGATGGTAAAATTTGTGACAATTAA 1350
> Ahg906352 jgi|Araly1|906352|Al_scaffold_0003_3480
Length=750
Score = 1077 bits (583), Expect = 0.0
Identities = 649/681 (95%), Gaps = 4/681 (1%)
Strand=Plus/Plus
Query 326 ATGAGCCAAAAGAAACTGACGAGGACTCAATCGTCGTTACTCAGATCATCTCCGACGATT 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGCCAAAAGAAACTGACGAGGACTCAATCGTCGTTACTCAGATCATCTCCGACGATT 60
Query 386 CGATCGTCGATCCAAAGCCTTTCTTCAATCACTGAATGTGATGACTTCAACGAAACCTCT 445
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 CGATCGTCGATTCAAAGCCTTTCTTCAATCACTGAATGTGATGACTTCAACGAAATCTCT 120
Query 446 CACCACCGCCGTGAACAAGATCTCGAAGCCGGTGAGAAAGAGGAAAAACAGAGGAGGAGA 505
||| |||||||||||||||||| ||||||||||||||||| || ||||||||||| |||
Sbjct 121 TACCCCCGCCGTGAACAAGATCTAGAAGCCGGTGAGAAAGAAGAGAAACAGAGGAGAAGA 180
Query 506 AAACCGGTTAAATCATTCGGGTCAATGAACCGAATTAAACCGGGTCTCGCATTCACACTC 565
||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 181 AAACCGGTTCAATCATTCGGGTCTATTAACCGAATTAAACCGGGTCTCGCATTCACACTC 240
Query 566 GCTTGTCTCTCTTTCCTGAGTCTCTCATCTTTCTTACTGTTCTTCGTTGATGAGATTTTC 625
||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct 241 GCTTGTCTCTCTTTCCTAAGTCTCTCGTCTTTCTTACTATTCTTCGTTGATGAGATTTTT 300
Query 626 ACGTCGGAGAATCTCTTACTAGGTTTGATTTTCGTCGCTCTTGCTCTGTTCTTCGCGTCG 685
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 ACGTCGGAGAATCTGTTACTAGGTTTGATTTTCGTCGCTCTTGCTCTGTTCTTCGCATCG 360
Query 686 AGAAACATGGCGGTTATTAACCAAACCGTAATCGCAATCAAGCAGATTCGTGTAAGGTCT 745
||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||
Sbjct 361 AGAAACATGGCGGTTATTAACCAAATCGTAATCGCAATCAAACAGATTCGCGTAAGGTCT 420
Query 746 CGAATCAAACACAAACCGAAACCGGTTCAATGGTACATCGGAGATTCAAAACCGGAACCG 805
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 421 CGAATCAAACACAAACCGAAACCGGTTCAATGGTACATCGGAGATACAAAACCGGAACCG 480
Query 806 ATCAAAGAAGAAGAAACA-AGACTTGTCGTTAAAGAAGGAGTTCAAT-TCTTTAGCAATG 863
||||||||||||||| || ||||| ||||| |||||||||||||||| | ||||||||||
Sbjct 481 ATCAAAGAAGAAGAA-CAGAGACTGGTCGTCAAAGAAGGAGTTCAATAT-TTTAGCAATG 538
Query 864 GAGATTTCTACGAAGGTGAATTCAACAGAGGGAAGTGTAACGGAAGTGGAGTTTATTATT 923
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 539 GAGATTTCTACGAAGGTGAATTCAACAGAGGGAAGTGTAACGGAAGTGGAGTGTACTATT 598
Query 924 ATTACGTTAATGGAAGATATGAAGGAGATTGGATCAATGGAAGGTACGATGGTTATGGAA 983
||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 599 ATTTCGTTAATGGAAGATATGAAGTAGATTGGATCAATGGAAGATACGATGGTTATGGAA 658
Query 984 TCGAGTGTTGGTCTAAAGGAA 1004
|||||||||||||||||||||
Sbjct 659 TCGAGTGTTGGTCTAAAGGAA 679
> Ahg472428 jgi|Araly1|472428|fgenesh2_kg.1__2382__AT1G21920.1
Length=1456
Score = 797 bits (431), Expect = 0.0
Identities = 882/1089 (81%), Gaps = 74/1089 (7%)
Strand=Plus/Plus
Query 533 AAC-CGAATTAAACCGGGTCTCGCATTCACACTCGCT-TGTCTCTCTTTCCTGAGTCTCT 590
||| || ||||| || ||| | ||||||||| | | | | |||||||||||| |||||||
Sbjct 197 AACTCGGATTAACCCCGGTTTAGCATTCACAAT-GGTGTCTCTCTCTTTCCTCAGTCTCT 255
Query 591 CATC--T-TTC-T-TAC-T-G--TTCT-TC--GTTGATGAGATTTTCACGTCGGAGAATC 638
|||| | ||| | | | | | |||| | ||||||||| |||| ||||| ||||
Sbjct 256 CATCGTTCTTCTTCTTCGTCGTCTTCTCACAAACCGATGAGATTCTCACATCGGAAAATC 315
Query 639 TCTTACTAGGTTTGATTTTCGTCGCTC-TTGCTCTGTTCTTCGCGT-CGAGAAACATGGC 696
| ||||||| ||| || |||||||| | | ||||| |||||||| | | || ||||| ||
Sbjct 316 TTTTACTAGCTTTAATCTTCGTCGC-CGTAGCTCTCTTCTTCGCCTCCAAG-AACATCGC 373
Query 697 GGTTATTAACCAAACCGTAATCGCAATCAAGCAGATTCGTGTAAGGTCTCGAATC--AAA 754
|| ||||||||||||||||||||||||| | | | | | ||| || || | |||
Sbjct 374 TCTTCTTAACCAAACCGTAATCGCAATCAA--A-A-AC-T-TCGGGTTTCAAAGCAGAAA 427
Query 755 CAC-AAACCGAAACCGGTTCAATGGTACATCGGAGATTCAAAACCGGAACC-GATCAAAG 812
| | ||| | |||||||| ||||||||||||||||| | | | | |||| || |||
Sbjct 428 CTCAAAATCAAAACCGGTACAATGGTACATCGGAGA--CGATA-CTAAACCGGA--GAAG 482
Query 813 AAGAAGAAACAAGACTTG-TCGTTAAAGAAGGAGTTCAATTCTTTAGCAATGGAGATTTC 871
|||| | | ||| | | |||||||||||||||||||||||| || ||||||||||||
Sbjct 483 AAGATCATA-AAG-C-GGTTCGTTAAAGAAGGAGTTCAATTCTACAGTAATGGAGATTTC 539
Query 872 TACGAAGGTGAA-TTCAACAGAGGGAAGTGTAACGGAAGTGGAGTTTATTATTATTACGT 930
|||||||||||| ||| ||| |||||||||||||||||||||||||||||| |||| |||
Sbjct 540 TACGAAGGTGAATTTC-ACAAAGGGAAGTGTAACGGAAGTGGAGTTTATTACTATTTCGT 598
Query 931 TA-ATGGAAGATATGAAGGAGATTGGATCA-ATGGAAGGTACGATGGTTATGGAATCGAG 988
| | ||||||||||||||||||||||| | |||| || || |||||| |||| || |||
Sbjct 599 GAGA-GGAAGATATGAAGGAGATTGGAT-AGATGGGAGATATGATGGTCATGGGATTGAG 656
Query 989 TGTTGGTCTAAAGGAAGTAAATATAAAGGACAGTATAAGCAAGGACTTAGACATGGTTTT 1048
||||| ||| |||||||| ||||||||| || |||| |||||| ||||||||||||| |
Sbjct 657 AGTTGGGCTAGAGGAAGTAGATATAAAGGTCAATATAGGCAAGGTCTTAGACATGGTTAT 716
Query 1049 GGAGTTTACT-GGTTTTACACCGGAGATTCTTACT-CTGGTGAATGGTTTAACGGTCAAA 1106
|||||||| | | || ||||| || |||| ||| | |||||||||||||||| |||||||
Sbjct 717 GGAGTTTA-TAGATTCTACACTGGTGATTGTTA-TGCTGGTGAATGGTTTAATGGTCAAA 774
Query 1107 GCCATGGCTTTGGAGTTCAAACTTGTGCTGATGGAAGCTCTTTTGTCGGAGAATTC-AAA 1165
||||||| ||||| |||||| ||||||||||||| ||||||| ||| || | | || | |
Sbjct 775 GCCATGGTTTTGGTGTTCAATCTTGTGCTGATGGTAGCTCTTATGTTGGTG-AGTCTAGA 833
Query 1166 TTTGGTGTCAAACATGGACTTGGTTCTTACCATTTCAGGAATGGAGATAAGTATGCAGGA 1225
|||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 834 TTTGGTGTTAAACATGGTCTTGGTTCTTACCATTTCAGAAATGGAGATAAGTATGCAGGA 893
Query 1226 GAGTATTTTGGAGACAAGATTCATGGATTTGGTGTTTACC-ATTTCGCTAATGGTCACTA 1284
|||||||||||||||||||||||||| |||||||| || | |||| ||||||||||| |
Sbjct 894 GAGTATTTTGGAGACAAGATTCATGGGTTTGGTGTGTATCGATTT-GCTAATGGTCATTG 952
Query 1285 TTACGAAGGAGCTTGGCATGAAGGTCGTAAACAAGGCTATGGCACGTA-TAGATTTAGAA 1343
||| |||||||| ||||||||||||||||| ||||| | ||| | || | | |||||||
Sbjct 953 TTATGAAGGAGCATGGCATGAAGGTCGTAAGCAAGGGTTTGGTGCTTACTCG-TTTAGAA 1011
Query 1344 CCGGTGATA-TCAAATCCGGTGAATGGGATG-ATGGTAATCTCGTTAAC--CATCTTCCT 1399
| |||||| | ||||| |||||||||||| | || || || || ||| | |||||||
Sbjct 1012 CTGGTGATGCT-AAATCTGGTGAATGGGATTCAGGG-AAGCTTGT-AACTTC-TCTTCCT 1067
Query 1400 -TTA-GACTCTGACCCGGTT-CGTAGGGCGGTTCAGAGTG-CACGAGAAAGAGCAAAGAA 1455
||| || | || || ||| | || ||||||||| | | | ||||||| ||| || ||
Sbjct 1068 CTTACGAGT--GAGCCAGTTTCA-AGAGCGGTTCAG-GCGGCTCGAGAAACAGCGAACAA 1123
Query 1456 TGG-AGTGAATCAGAGACG-GATCGATGAGCAGGTGATACGAGCTGTGGCTGCAGCTAAT 1513
|| |||||||| |||||| | | ||||||||||||| ||||| |||||||||||||||
Sbjct 1124 -GGCAGTGAATCGGAGACGAG-TAGATGAGCAGGTGAGCCGAGCCGTGGCTGCAGCTAAT 1181
Query 1514 AAAGCTGCGACGGCTGCTAGAGTTGCAGCTGTGAAAGCAGTTCAAAATCAAATGGATGGT 1573
|| ||||| |||||||| ||||| || ||||||| ||| ||||| |||||||||||||||
Sbjct 1182 AAGGCTGCTACGGCTGCAAGAGTGGCTGCTGTGAGAGCTGTTCAGAATCAAATGGATGGT 1241
Query 1574 AAAATTTGT 1582
||| |||||
Sbjct 1242 AAATTTTGT 1250
> Ahg335432 jgi|Araly1|335432|fgenesh1_pg.C_scaffold_1001997
Length=1029
Score = 603 bits (326), Expect = 2e-171
Identities = 585/706 (83%), Gaps = 34/706 (5%)
Strand=Plus/Plus
Query 894 GGAAGTGTAACGGAAGTGGAGTTTATTATTATTACGTTA-ATGGAAGATATGAAGGAGAT 952
|||||||||| |||||||| || ||||| |||| ||| | | ||||||||||||||||||
Sbjct 332 GGAAGTGTAATGGAAGTGGTGTGTATTACTATTTCGTGAGA-GGAAGATATGAAGGAGAT 390
Query 953 TGGATCA-ATGGAAGGTACGATGGTTATGGAATCGAGTGTTGGTCTAAAGGAAGTAAATA 1011
||||| | |||| || || |||||| |||| || ||| ||||| ||| |||||||| |||
Sbjct 391 TGGAT-AGATGGGAGATATGATGGTCATGGGATTGAGAGTTGGGCTAGAGGAAGTAGATA 449
Query 1012 TAAAGGACAGTATAAG-CAAGGACTTAGACATGGTTTTGGAGTTTACT-GGTTTTACACC 1069
|||||| || ||| || ||||| |||||||||||| ||||||||| | | || |||||
Sbjct 450 TAAAGGTCAATAT-AGACAAGGTCTTAGACATGGTAATGGAGTTTA-TAGATTCTACACT 507
Query 1070 GGAGATTCTTACT-CTGGTGAATGGTTTAACGGTCAAAGCCATGGCTTTGGAGTTCAAAC 1128
|| |||| ||| | |||||||||||||||| |||||||||||||| ||||| | |||| |
Sbjct 508 GGTGATTGTTA-TGCTGGTGAATGGTTTAATGGTCAAAGCCATGGTTTTGGTGGTCAATC 566
Query 1129 TTGTGCTGATGGAAGCTCTTTTGTCGGAGAATTC-AAATTTGGTGTCAAACATGGACTTG 1187
|||||||||||| ||||||| ||| || | | || | ||||||||| |||||||| ||||
Sbjct 567 TTGTGCTGATGGTAGCTCTTATGTTGGTG-AGTCTAGATTTGGTGTTAAACATGGTCTTG 625
Query 1188 GTTCTTACCATTTCAGGAATGGAGATAAGTATGCAGGAGAGTATTTTGGAGACAAGATTC 1247
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 626 GTTCTTACCATTTCAGAAATGGAGATAAGTATGCAGGAGAGTATTTTGGAGACAAGATTC 685
Query 1248 ATGGATTTGGTGTTTACC-ATTTCGCTAATGGTCACTATTACGAAGGAGCTTGGCATGAA 1306
|||| |||||||| || | |||| ||||||||||| | ||| |||||||| |||||||||
Sbjct 686 ATGGGTTTGGTGTGTATCGATTT-GCTAATGGTCATTGTTATGAAGGAGCATGGCATGAA 744
Query 1307 GGTCGTAAACAAGGCTATGGCACGTA-TAGATTTAGAACCGGTGATA-TCAAATCCGGTG 1364
|||||||| ||||| | ||| | || | | |||||||| |||||| | ||||| ||||
Sbjct 745 GGTCGTAAGCAAGGGTTTGGTGCTTACTCG-TTTAGAACTGGTGATGCT-AAATCTGGTG 802
Query 1365 AATGGGATGATGGTAATCTCGTTAAC--CATCTTCCT-TTA-GACTCTGACCCGGTT-CG 1419
|||||||| ||| || || || ||| | ||||||| || || | || || ||| |
Sbjct 803 AATGGGATTCTGGGAAGCTTGT-AACTTC-TCTTCCTCTTGCGAGT--GAGCCAGTTTCA 858
Query 1420 TAGGGCGGTTCAGAGTG-CACGAGAAAGAGCAAAGAATGG-AGTGAATCAGAGACG-GAT 1476
|| ||||||||| | | | ||||||| ||| || || || |||||||| |||||| | |
Sbjct 859 -AGAGCGGTTCAG-GCGGCTCGAGAAACAGCGAATAA-GGCAGTGAATCGGAGACGAG-T 914
Query 1477 CGATGAGCAGGTGATACGAGCTGTGGCTGCAGCTAATAAAGCTGCGACGGCTGCTAGAGT 1536
||||||||||||| ||||| ||||||||||||||||| ||||| |||||||| |||||
Sbjct 915 AGATGAGCAGGTGAGCCGAGCCGTGGCTGCAGCTAATAAGGCTGCTACGGCTGCAAGAGT 974
Query 1537 TGCAGCTGTGAAAGCAGTTCAAAATCAAATGGATGGTAAAATTTGT 1582
|| ||||||| ||| ||||| |||||||||||||||||| |||||
Sbjct 975 GGCTGCTGTGAGAGCCGTTCAGAATCAAATGGATGGTAAATTTTGT 1020
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66238936055
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5