BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G77710.1

Length=647
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg927173 jgi|Araly1|927173|scaffold_202734.1                        512    1e-144


> Ahg927173 jgi|Araly1|927173|scaffold_202734.1
Length=326

 Score =  512 bits (277),  Expect = 1e-144
 Identities = 312/328 (95%), Gaps = 5/328 (2%)
 Strand=Plus/Plus

Query  95   TCTCCTCCCCCGTCGGAAAAAATGGCCACTGGT---GGAAAAGTCTCCTTCAAAGTCACT  151
            ||||||||  |||||| ||||||||||||||||   ||||||||||||||||||||||||
Sbjct  1    TCTCCTCCGTCGTCGGGAAAAATGGCCACTGGTGGAGGAAAAGTCTCCTTCAAAGTCACT  60

Query  152  CTGACTTCGGATCCTAAGCTTCCTTTCAAAGTTTTCAGCGTACCAGAAGGAGCTCCGTTC  211
            ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct  61   CTGACTTCGGATCCTAAGCTTCCTTTCAAAGTTTTCAGCGTCCCAGAAGGAGCTCCATTC  120

Query  212  ACGGCGGTTCTGAAATTCGCAGCAGAAGAGTTCAAGGTTCCTCCACAAACCAGCGCCATC  271
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  ACGGCGGTTCTGAAATTCGCAGCAGAAGAGTTCAAGGTTCCTCCACAAACCAGCGCCATC  180

Query  272  ATCACTAATGATGGGATCGGGATCAATCCTCAACAGAGTGCAGGAAACGTTTTTCTGAAG  331
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  ATCACTAATGATGGGATTGGGATCAATCCTCAACAGAGTGCAGGAAACGTTTTTCTGAAG  240

Query  332  CACGGATCTGAACTAAGATTGATCCCGCGTGATAGAGTTGGAGCTGTGTTTGTGATGGAT  391
            |||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct  241  CACGGATCTGAACTCAGACTGATCCCGCGTGATAGAGTTGGAGCTGCGTTTGTGATGGAT  300

Query  392  CCATAGATGATGTGTAAGCAATGATTAA  419
            ||||| ||| | |||||||||||| |||
Sbjct  301  CCATAAATG-T-TGTAAGCAATGAGTAA  326



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23712454374


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5