BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G77710.1 Length=647 Score E Sequences producing significant alignments: (Bits) Value Ahg927173 jgi|Araly1|927173|scaffold_202734.1 512 1e-144 > Ahg927173 jgi|Araly1|927173|scaffold_202734.1 Length=326 Score = 512 bits (277), Expect = 1e-144 Identities = 312/328 (95%), Gaps = 5/328 (2%) Strand=Plus/Plus Query 95 TCTCCTCCCCCGTCGGAAAAAATGGCCACTGGT---GGAAAAGTCTCCTTCAAAGTCACT 151 |||||||| |||||| |||||||||||||||| |||||||||||||||||||||||| Sbjct 1 TCTCCTCCGTCGTCGGGAAAAATGGCCACTGGTGGAGGAAAAGTCTCCTTCAAAGTCACT 60 Query 152 CTGACTTCGGATCCTAAGCTTCCTTTCAAAGTTTTCAGCGTACCAGAAGGAGCTCCGTTC 211 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 61 CTGACTTCGGATCCTAAGCTTCCTTTCAAAGTTTTCAGCGTCCCAGAAGGAGCTCCATTC 120 Query 212 ACGGCGGTTCTGAAATTCGCAGCAGAAGAGTTCAAGGTTCCTCCACAAACCAGCGCCATC 271 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 ACGGCGGTTCTGAAATTCGCAGCAGAAGAGTTCAAGGTTCCTCCACAAACCAGCGCCATC 180 Query 272 ATCACTAATGATGGGATCGGGATCAATCCTCAACAGAGTGCAGGAAACGTTTTTCTGAAG 331 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 181 ATCACTAATGATGGGATTGGGATCAATCCTCAACAGAGTGCAGGAAACGTTTTTCTGAAG 240 Query 332 CACGGATCTGAACTAAGATTGATCCCGCGTGATAGAGTTGGAGCTGTGTTTGTGATGGAT 391 |||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||| Sbjct 241 CACGGATCTGAACTCAGACTGATCCCGCGTGATAGAGTTGGAGCTGCGTTTGTGATGGAT 300 Query 392 CCATAGATGATGTGTAAGCAATGATTAA 419 ||||| ||| | |||||||||||| ||| Sbjct 301 CCATAAATG-T-TGTAAGCAATGAGTAA 326 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23712454374 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5