BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77740.1
Length=2698
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476937 jgi|Araly1|476937|fgenesh2_kg.2__2067__AT1G77740.1 3600 0.0
Ahg472433 jgi|Araly1|472433|fgenesh2_kg.1__2387__AT1G21980.1 2095 0.0
Ahg887765 jgi|Araly1|887765|Al_scaffold_0089_4 505 8e-142
> Ahg476937 jgi|Araly1|476937|fgenesh2_kg.2__2067__AT1G77740.1
Length=2567
Score = 3600 bits (1949), Expect = 0.0
Identities = 2246/2385 (94%), Gaps = 37/2385 (2%)
Strand=Plus/Plus
Query 47 AAGAAGCTAGGGTTTCTCTGATGAGTAGATGATGCGTGAACCGCTTGTTAGCgaagaaga 106
||||||||||||||| ||||||||||||||||||||||||||||||| | | | ||
Sbjct 44 AAGAAGCTAGGGTTTATCTGATGAGTAGATGATGCGTGAACCGCTTG-T--C--A-TCGA 97
Query 107 agaagaagaagCTACTGAAGTTTTACTAGTGgagaagacgaa-g---t--------tgtg 154
||||||||||||||||||||||||||| |||||||||| ||| | | ||||
Sbjct 98 AGAAGAAGAAGCTACTGAAGTTTTACTTGTGGAGAAGAAGAAGGTTTTAGAAGAGGTGTG 157
Query 155 taagagacgagg--agacgaa-gaaaaaacg--gaagagagaagagacgaTTTGTTGTTA 209
||||||||| || ||| ||| || | ||| |||||||||||||||||||||||||||
Sbjct 158 TAAGAGACG-GGTTAGA-GAAGGAGGAGACGAAGAAGAGAGAAGAGACGATTTGTTGTTA 215
Query 210 CTAGCTTTAACGCCGATGGTACGATCGAAATCTCAAGGAACTACTCGGCGCGTCACTCCC 269
|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 216 CTAGCTTTAACGCCGATGGTACGATCGAAATCTCTAGGAACTACACGGCGCGTCACTCCA 275
Query 270 ACGCCACCTCCTGTT-GACGTGGAGAAACCGTTACCAAACGGAGATCTCTACATGGGAAC 328
||||||||||| ||| ||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 276 ACGCCACCTCC-GTTAGACGTGGAGAAGCCGTTACCAAACGGAGATCTCTATATGGGAAC 334
Query 329 GTTTTCCGGCGGGTTTCCCAACGGATCCGGTAAGTATTTGTGGAAGGATGGGTGTATGTA 388
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 335 GTTTTCCGGCGGGTTTCCCAACGGATCCGGTAAGTATTTGTGGAAGGATGGTTGTATGTA 394
Query 389 CGAAGGCGAGTGGAAACGTGGTAAAGCGAGTGGTAAAGGCAAGTTTTCGTGGCCGAGTGG 448
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 395 CGAAGGCGAGTGGAAACGTGGGAAAGCGAGTGGTAAAGGCAAGTTTTCATGGCCGAGTGG 454
Query 449 TGCGACTTATGAAGGAGAGTTCAAATCTGGGAGAATGGAAGGATCTGGGACTTTTGTTGG 508
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 455 TGCGACTTACGAAGGAGAGTTCAAATCTGGGAGAATGGAAGGATTTGGGACTTTTGTTGG 514
Query 509 TGTTGATGGTGATACTTATCGTGGCTCTTGGGTTGCTGATCGGAAACAAGGTCATGGTCA 568
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 515 CGTTGATGGTGATACTTATCGAGGCTCTTGGGTTGCTGATCGGAAACATGGTCATGGTCA 574
Query 569 GAAGAGATATGCCAACGGAGATTACTATGAAGGTACATGGCGGCGGAATCTTCAGGATGG 628
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 575 GAAGAGATATGCCAACGGAGATTACTATGAAGGAACATGGCGGCGGAATCTACAGGATGG 634
Query 629 GAGAGGGA-GATATGTTTGGATGAATGGGAATCAGTATACAGGAGAGTGGAGAAATGGTG 687
|||| ||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 635 GAGA-GGACGATATGTTTGGATGAATGGGAATCAGTATACAGGAGAATGGAGGAATGGTG 693
Query 688 TGATATGTGGTAAAGGTGTGCTTGCTTGGCCTAATGGGAATAGATATGAAGGTCAATGGG 747
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 694 TGATTTGTGGTAAAGGTGTGCTTGCTTGGCCTAATGGGAATAGATTTGAAGGTCAATGGG 753
Query 748 AAAATGGTGTTCCTAAAGGAAGTGGTGTGTTTACTTGGGCTGATGGAAGTTCGTGGATTG 807
||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||| |
Sbjct 754 AAAATGGAGTTCCTAAAGGAAGTGGTGTGTTTACTTGGCCTGATGGAAGTTCTTGGATCG 813
Query 808 GTTCTTGGAATGAGAGTAGTAATCTCATGAGGAATTTCTTTGATGGGATTGAGAAGAATG 867
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 814 GTTCTTGGAATGAGAGTAGTAATCTCATGAGGAATTTTTTTGATGGGATTGAGAAGAATG 873
Query 868 AGTTGATTGTTGCGACTAGGAAGAGATCTTCGGTTGATAGTGGCGCTGGAAGTTTGACTG 927
||||||||||||| || |||||||||||||| ||||||||||| ||||| ||||||||||
Sbjct 874 AGTTGATTGTTGCCACGAGGAAGAGATCTTCTGTTGATAGTGGAGCTGGGAGTTTGACTG 933
Query 928 GGGAGAAGATTTTCCCTAGGATATGTATTTGGGAGTCTGATGGAGAAGCTGGGGATATTA 987
||||||||||||||||||| || ||||||||||| |||||||| |||||||| |||||||
Sbjct 934 GGGAGAAGATTTTCCCTAGAATCTGTATTTGGGAATCTGATGGTGAAGCTGGAGATATTA 993
Query 988 CTTGTGATATTGTTGATAATGTGGAAGCTTCTGTGATATACAGAGATAGGATTTCTATTG 1047
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 994 CTTGTGATATTGTTGATAATGTGGAAGCTTCTGTGATTTACAGAGATAGGATTTCTATTG 1053
Query 1048 ATAAAGATGGGTTTCGTCAGTTTAGGAAGAATCCTTGTTGTTTCAGCGGTGAGGCTAAGA 1107
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1054 ATCGTGATGGGTTTCGTCAGTTTAGGAAGAATCCTTGTTGTTTCAGCGGTGAGGCTAAGA 1113
Query 1108 AACCTGGAGAGACGATATCTAAAGGGCATAAGAAATATGATTTGATGCTCAACCTGCAGC 1167
||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||| |
Sbjct 1114 AACCTGGAGAGACCATATCTAAAGGGCATAAGAAATACGATTTGATGCTCAACTTGCAAC 1173
Query 1168 ATGGAATTAGGTACTCTGTCGGCAAACACGCTTCCGTTGTTCGAGATCTCAAACAGAGTG 1227
||||||| |||||||||||||||||||| |||||||||||||||||||||||||| || |
Sbjct 1174 ATGGAATCAGGTACTCTGTCGGCAAACATGCTTCCGTTGTTCGAGATCTCAAACATAGCG 1233
Query 1228 ATTTTGACCCAAGTGAAAAGTTCTGGACAAGGTTCCCACCGGAGGGTTCTAAGACCACAC 1287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1234 ATTTTGACCCAAGTGAAAAGTTCTGGACAAGGTTCCCACCGGAGGGTTCTAAGACCACAC 1293
Query 1288 CACCGCATCTATCTGTGGATTTCCGCTGGAAGGACTATTGCCCTTTGGTGTTTAGACGGC 1347
|||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1294 CACCACATCTGTCTGTTGATTTCCGCTGGAAGGACTATTGCCCTTTGGTGTTTAGACGGC 1353
Query 1348 TTAGGGAGCTATTCACGGTGGATCCTGCCGATTACATGCTAGCTATCTGTGGAAACGATG 1407
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1354 TGAGGGAGCTATTCACGGTGGATCCTGCTGATTACATGCTAGCTATCTGTGGAAACGATG 1413
Query 1408 CCCTTAGGGAATTGTCTTCGCCTGGAAAGAGTGGAAGCtttttttACTTAACTCAAGATG 1467
| ||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1414 CTCTTAGGGAACTATCTTCGCCTGGAAAGAGTGGAAGTTTTTTTTACTTAACTCAAGATG 1473
Query 1468 ACAGATTTATGATCAAGACGGTGAAGAAATCTGAAGTCAAGGTGCTTCTACGAATGCTTC 1527
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1474 ACAGATTTATGATCAAGACGGTGAAGAAATCAGAAGTCAAGGTGCTTCTACGAATGCTTC 1533
Query 1528 CAAGTTACTACAAACACGTCTGCCAGTATGAAAATACACTTGTGACTAGGTTCTATGGTG 1587
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1534 CAAGTTACTACAAACATGTCTGCCAGTATGAAAATACACTTGTGACTCGGTTCTACGGTG 1593
Query 1588 TGCATTGTATCAAACCTGTTGGTGGCCAGAAGACTCGGTTTATCGTTATGGGGAACTTGT 1647
|||| |||||||||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 1594 TGCACTGTATCAAACCTGTTGGTGGCCAGAAGACTCGGTTTATTGTCATGGGGAACTTAT 1653
Query 1648 TCTGCTCCGAATATAGAATCCAGAGAAGGTTTGACCTTAAAGGGTCTTCCCATGGACGGT 1707
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 1654 TCTGCTCCGAATATAGAATCCAGAGACGGTTTGACCTGAAAGGGTCTTCCCATGGACGGT 1713
Query 1708 ATACCTCCAAACCTGAAGGGGAAATTGATGAGACCACTACTCTTAAGGACCTTGATCTCA 1767
||||||||||||| |||||||||||||||||||| ||||| || ||||||||||||||||
Sbjct 1714 ATACCTCCAAACCCGAAGGGGAAATTGATGAGACTACTACCCTCAAGGACCTTGATCTCA 1773
Query 1768 ATTTTGCTTTCCGTCTTCAGAGAAATTGGTACCAAGAGCTTATGACGCAAATTAAACGCG 1827
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1774 ATTTTGCTTTCCGTCTTCAGAGAAATTGGTACCAAGAGCTTATGACGCAAATTAAGTGCG 1833
Query 1828 ACTGTGAGTTCTTGGAAGCTGAAAGAATAATGGATTATAGTCTTTTGGTTGGCGTTCACT 1887
|||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct 1834 ACTGTGAGTTCTTGGAAGCTGAGAGAATTATGGATTATAGCCTTTTGGTTGGCGTTCACT 1893
Query 1888 TCCGTGATGACAACACAGGAGACAAAATGGGGTTATCTCCATTTGTATTGAGATCTGGTA 1947
|||||||||||| ||||||||||||||||||| | |||||||| || |||||||||||||
Sbjct 1894 TCCGTGATGACACCACAGGAGACAAAATGGGGCTCTCTCCATTCGTTTTGAGATCTGGTA 1953
Query 1948 AGATAGAGTCATACCAAAGCGAAAAATTTATGCGTGGTTGTCGGTTCTTGGAGGCGGAAC 2007
|||||||||| ||||||| ||| |||||||||||||||||||| |||||||| |||||||
Sbjct 1954 AGATAGAGTCGTACCAAAACGAGAAATTTATGCGTGGTTGTCGCTTCTTGGAAGCGGAAC 2013
Query 2008 TTCAAGACATGGACCGCATTTTAGCTGGCAGGAAACCATTGATTCGATTAGGCGCAAACA 2067
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2014 TTCAAGACATGGACCGCATTTTAGCTGGCAGGAAACCATTGATTCGATTAGGGGCAAACA 2073
Query 2068 TGCCTGCAAGAGCAGAACGAATGGCGAGAAGAAGCGACTATGATCAGTATTCCTCAGGAG 2127
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2074 TGCCTGCAAGAGCAGAACGAATGGCGAGAAGAAGCGACTATGATCAGTATTCCTCTGGAG 2133
Query 2128 GGACCAACTACCAATCTCATGGAGAGGTCTACGAAGTGGTTCTATATTTTGGAATCATTG 2187
|||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2134 GGACCAACTATCTATCTCACGGAGAGGTCTACGAAGTGGTTCTATATTTTGGAATCATTG 2193
Query 2188 ACATTTTACAAGATTACGACATAAGCAAGAAGATCGAGCATGCTTACAAGTCTCTACAAG 2247
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2194 ACATATTACAAGATTACGACATAAGCAAGAAGATCGAGCATGCTTACAAGTCTCTACAAG 2253
Query 2248 CTGACCCGGCTTCAATCTCTGCCGTTGATCCCAAACTATACTCAAGAAGGTTTAGAGATT 2307
|||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 2254 CTGATCCGGCTTCAATCTCAGCCGTTGATCCCAAACTATACTCAAGAAGGTTCAGAGATT 2313
Query 2308 TCATCAGCAGAATCTTCATCGAAGACGGCTAAAATGAAGGTCTACTTATATTAGCCCCAT 2367
|||||||||||||||||||||||||||||||| |||||||||| ||| |||||||
Sbjct 2314 TCATCAGCAGAATCTTCATCGAAGACGGCTAA--TGAAGGTCTA---ATA---GCCCCAT 2365
Query 2368 CATTGAAAGGTCAAACCTAAGCTCCTCGCTTTATACCTCAGATAA 2412
|||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2366 CATTGAAAGGTCAAACCTAAGCTCCTCGCTTTTTACCTCAGATAA 2410
> Ahg472433 jgi|Araly1|472433|fgenesh2_kg.1__2387__AT1G21980.1
Length=2592
Score = 2095 bits (1134), Expect = 0.0
Identities = 1856/2199 (84%), Gaps = 72/2199 (3%)
Strand=Plus/Plus
Query 183 gaagagagaagagacgaTTTGTTGTTACTAGCTTTAA-C-GC-C-GATGGT-ACGATCGA 237
||||||||| |||||| |||| |||| |||| | || | | | ||||| | ||||||
Sbjct 109 GAAGAGAGACGAGACGGTTTGGTGTTGTTAGC-TCAATCTACTCAAATGGTGA-GATCGA 166
Query 238 AATCTCAAGGAACTACTCGGCGCGTCACTCCCACGCCACCTCCTGTTGACGTGGAGAAAC 297
|||||||||||| ||||||||||| ||||||||||| | ||| || || ||||| |
Sbjct 167 GATCTCAAGGAACGACTCGGCGCGTGACTCCCACGCC-TTTACTG--GATGTTGAGAAGC 223
Query 298 CGTTACCAAACGGAGATCTCTACATGGGAACG-TTTTCCGGCGGGTTTCCCA-ACGGATC 355
|| |||| ||||||||||||||||| |||| | || |||||||||||| ||| | |||||
Sbjct 224 CGCTACCGAACGGAGATCTCTACATCGGAA-GCTTCTCCGGCGGGTTT-CCACATGGATC 281
Query 356 CGGTAAGTATTTGTGGAAGGATGGGTGTATGTACGAAGGCGAGTGGAAACGTGGTAAAGC 415
||| |||||| | ||||| |||||||| ||||| ||||| || |||||||| ||||||||
Sbjct 282 CGGCAAGTATCTATGGAAAGATGGGTGCATGTATGAAGGTGATTGGAAACGAGGTAAAGC 341
Query 416 --GAGTGGTAAAGGCAAGTTTTCGTGGCCGAGTGGTGCGACTTATGAAGGAGAGTTCAAA 473
|| || |||||||| || || ||||| ||||| || ||||| ||||| || ||||||
Sbjct 342 TTCAG-GG-AAAGGCAAATTCTCATGGCCAAGTGGAGCTACTTACGAAGGTGAATTCAAA 399
Query 474 TCTGGGAGAATGGAAGGATCTGGGACTTTTGTTGGTGTTGATGGTGATACTTATCGTGGC 533
|||||||| |||||||| | ||| ||||| ||| | |||||| ||||||||| | ||
Sbjct 400 TCTGGGAGGATGGAAGGTTTTGGTACTTTCACTGGAGCTGATGGAGATACTTATAGAGG- 458
Query 534 T-CTTGGGTTGCTGATCGGAAACAAGGTCATGGTCAGAAGAGATATGCCAACGGAGATTA 592
| |||||||||||||| | ||||| |||||||| || ||| | ||||| || |||||||
Sbjct 459 TACTTGGGTTGCTGATAGAAAACATGGTCATGGACAAAAGCGTTATGCAAATGGAGATTT 518
Query 593 CTATGAAGGTACATGGCGGCGGAATCTTCAGGATGGGAGAGGGAGATATGTTTGGATG-A 651
||||||||||| ||| | ||||||| || ||||| ||||| || ||||| |||| | |
Sbjct 519 TTATGAAGGTACTTGGAGAAGGAATCTACAAGATGGTAGAGGTAGGTATGTGTGGA-GAA 577
Query 652 ATGGGAATCAGTATACAGGAGAGTGGAGAAATGGTGTGATATGTGGTAAAGGTGTGCTTG 711
|||||||||||||||| ||||||||| | | |||||||| | ||| |||||| | ||||
Sbjct 578 ATGGGAATCAGTATACTGGAGAGTGGCGTAGCGGTGTGATTTCTGGGAAAGGTTTACTTG 637
Query 712 CTTGGCCTAATGGGAATAGATATGAAGGTCAATGGGAAAATGGTG-TTCCTAAAGGAAGT 770
|||||||||||||||| ||||||| ||| ||||| ||||| | ||||||||||||||
Sbjct 638 TTTGGCCTAATGGGAATCGATATGAGGGTTTGTGGGAGAATGG-GATTCCTAAAGGAAGT 696
Query 771 GGTGTGTTTACTTGG-GCTGATGGAAGTTCGTG-GATTGGTTCTTGGAATGAGAGT-AGT 827
||||||||||||||| | |||||| ||||| || | ||||| |||||||||||||| ||
Sbjct 697 GGTGTGTTTACTTGGAG-TGATGGGAGTTCTTGTG-TTGGTGCTTGGAATGAGAGTAAG- 753
Query 828 AATCTCATGAGGAATTTCTTTGATGG-GATTGAGAAGAATGAGTTGATTGTTGCGACTAG 886
|| | ||||||| ||||||| |||| | ||||||||||||| |||||||| | || |||
Sbjct 754 -AT-T-ATGAGGAGTTTCTTTAATGGTG-TTGAGAAGAATGATTTGATTGTGGGGAATAG 809
Query 887 GAAGAGATCTTCGGTTGATAGTGGCGCTGGAAGTTTGACTGGGGAG-AAGATTTTCCCTA 945
|||||||||||| ||||||||||| ||||| |||||| || ||| ||| |||| || |
Sbjct 810 GAAGAGATCTTCTGTTGATAGTGGAGCTGGGAGTTTGGGAGGTGAGAAAG-TTTTTCCAA 868
Query 946 GGATATGTATTTGGGAGTCTGATGGAGAAGCTGGGGATATTACTTGTGATATTGTTGATA 1005
| || ||||||||||| |||||||| |||||||||||||| |||||||||||| ||||||
Sbjct 869 GAATCTGTATTTGGGAATCTGATGGTGAAGCTGGGGATATCACTTGTGATATTATTGATA 928
Query 1006 ATGTGGAAGCTTCTGTGATATACAGAGATAGGATTTCTATTGATAAAGATGGGTTTCGTC 1065
|||| |||||||| |||| || ||||||||||| ||| | ||| ||||||||| | |
Sbjct 929 ATGTTGAAGCTTCCATGATTTATAGAGATAGGATCTCTGTGGATCGTGATGGGTTTAGGC 988
Query 1066 AGTTTAGGAAGAATCCTTGTT-GTTTCAGCGGTGAGGCTAAGAAACCTGGAGAGACGATA 1124
|||||| |||||||||||||| |||| | |||||||||||||||||||||||||| |||
Sbjct 989 AGTTTAAGAAGAATCCTTGTTGGTTTGA-TGGTGAGGCTAAGAAACCTGGAGAGACTATA 1047
Query 1125 TCTAAAGGGCATAAGAAATATGATTTGATGCTCAACCTGC-AGCATGGAATTAGGTACTC 1183
|||||||||||||||||||||||||||||||| || ||| | | ||||| ||||| ||
Sbjct 1048 TCTAAAGGGCATAAGAAATATGATTTGATGCTGAATTTGCAATTA-GGAATCAGGTATTC 1106
Query 1184 TGTCGGCAAACACGCTTCCG-TTGTTCGAGATCTCAAACAGAGTGATTTTGA-CCCAAGT 1241
||| || ||||| |||| || ||||||| ||||| ||||||| ||||||||| || |||
Sbjct 1107 TGTTGGTAAACATGCTT-CGATTGTTCGTGATCTTAAACAGAATGATTTTGATCCAAAG- 1164
Query 1242 GA-AAAGTTCTGGACAAGGTTCCCACCGG-AGGGTTCTAAGACCACACCACCGCATCTA- 1298
|| ||| || ||||||||||| ||||||| |||| ||||||||||||| ||||||| |
Sbjct 1165 GAGAAA-TTTTGGACAAGGTTTCCACCGGAAGGG-ACTAAGACCACACCGCCGCATC-AG 1221
Query 1299 TCTGTGGATTTCCGCTGGAAGGACTATTGCCCTTTGGTGTTTAGACGGCTTAGGGAGCTA 1358
|| ||||||||| | |||||||| ||||||||||||||||| ||||| || ||||||||
Sbjct 1222 TCAGTGGATTTCAGGTGGAAGGATTATTGCCCTTTGGTGTTCAGACGTCTCAGGGAGCTT 1281
Query 1359 TT-CACGGTGGATCCTGCCGATTACATGCTAGCTATCTGTGGAAACGATGCCCTTAGGGA 1417
|| || |||||||| || || || ||| ||||||| |||||||| ||||| || | ||
Sbjct 1282 TTCCA-AGTGGATCCAGCTGAGTATATGTTAGCTATATGTGGAAATGATGCTCTCCGCGA 1340
Query 1418 ATTGTCTTCGCCTGGAAAGAGTGGAAGCtttttttACTTAACTCAAGATGACAGATTTAT 1477
| ||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1341 ACTGTCTTCACCTGGAAAGAGTGGAAGCTTTTTTTACCTAACTCAAGATGATAGATTTAT 1400
Query 1478 GATCAAGACGGTGAAGAAATCTGAAGTCAAGGTGCTTCTACGAATGCTTCCAAGTTACTA 1537
|||||| |||||||||||||| ||||||||||| |||||| |||||||||| ||||||||
Sbjct 1401 GATCAAAACGGTGAAGAAATCAGAAGTCAAGGTTCTTCTAAGAATGCTTCCGAGTTACTA 1460
Query 1538 CAAACACGTCTGCCAGTATGAAAA-TACACTTGTGACTAGGTTCTATGGTGTGCATTGTA 1596
|||||| |||||||| || ||||| | | ||||||||||| ||||| ||||| ||||||
Sbjct 1461 CAAACATGTCTGCCAATACGAAAACT-CCCTTGTGACTAGATTCTACGGTGTTCATTGTG 1519
Query 1597 TCAAACCTGTTGGTGGCCAGAAGACTCGGTTTATCGTTATGGGGAACTTGTTCTGCTCCG 1656
||||||||||||||||||| ||||||||||||||||| ||||| ||||| ||||||||||
Sbjct 1520 TCAAACCTGTTGGTGGCCAAAAGACTCGGTTTATCGTCATGGGAAACTTATTCTGCTCCG 1579
Query 1657 AATATAGAATCCAGAGAAGGTTTGACCTTAAAGGGTCTTCCCATGGACGGTATAC-CT-C 1714
| ||||||||||||||| | |||||||| ||||||||||| ||||||| ||| | || |
Sbjct 1580 AGTATAGAATCCAGAGACGATTTGACCTCAAAGGGTCTTCTCATGGAC-GTA-GCACTGC 1637
Query 1715 CAAACCTGAAGGGGAAATTGATGAGACCACTACTCTTAAGGACCTTGATCTCAATTTTGC 1774
||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1638 AAAACCTGAAGGAGAAATTGATGAGACCACGACTCTCAAGGACCTTGATCTCAATTTTGC 1697
Query 1775 TTTCCGTCTTCAGAGAAATTGGTACCAAGAGCTTATGACGCAAATTAAACGCGACTGTGA 1834
|||||||||||||||||| ||||| ||||||||||||| |||||| ||||||||||||||
Sbjct 1698 TTTCCGTCTTCAGAGAAACTGGTATCAAGAGCTTATGAAGCAAATAAAACGCGACTGTGA 1757
Query 1835 GTTCTTGGAAGCTGAAAGAATAATGGATTATAGTCTTTTGGTTGGCGTTCACTTCCGTGA 1894
|||||||||||| || || |||||||||||||| ||||| ||||| ||||||||||||||
Sbjct 1758 GTTCTTGGAAGCCGAGAGGATAATGGATTATAGCCTTTTAGTTGGTGTTCACTTCCGTGA 1817
Query 1895 TGACAACACAGGAGACAAA-ATGGGGTTATCTCCATTTGTATTGAGATCTGGTAAGATAG 1953
||||||||||||||| ||| |||||| | |||||||| || ||||||||||||| |||||
Sbjct 1818 TGACAACACAGGAGA-AAAGATGGGGCTCTCTCCATTCGTTTTGAGATCTGGTAGGATAG 1876
Query 1954 AGTCATACCA-AAGCGAAAAATTTATGCGTGGTTGTCGGTTCTTGGAGGCGGAACTTCAA 2012
| ||||| || || || ||||| ||||| |||||||| ||| | ||||| |||||||||
Sbjct 1877 ATTCATATCAGAAT-GAGAAATTCATGCGCGGTTGTCGCTTCCTAGAGGCTGAACTTCAA 1935
Query 2013 GACATGGACCGCATTTTAGCTGGCAGGAAACCATTGATTC-GATTAGGCGCAAACATGCC 2071
||||||||||| |||||||||||||||||||||| ||| | |||||||||||||||||||
Sbjct 1936 GACATGGACCGGATTTTAGCTGGCAGGAAACCATCGAT-CAGATTAGGCGCAAACATGCC 1994
Query 2072 TGCAAGAGCAGAACGAATGGCGAGAAGAAGCGACTAT-GATCAGTATTCCTCAGGAGGGA 2130
|||||||| ||||||||||| | ||||| || | | ||||||||||| |||||||| |
Sbjct 1995 AGCAAGAGCTGAACGAATGGCCCGGAGAAGTGATT-TCGATCAGTATTCATCAGGAGG-A 2052
Query 2131 CC-AACTACCAATCTCATGGAGAGGTCTACGAAGTGGTTCTATATTTTGGAATCATTGAC 2189
| || |||| |||||| || ||| | |||||||||||||| || |||||| ||||||||
Sbjct 2053 GCGAATTACCCATCTCACGGTGAGATGTACGAAGTGGTTCTCTACTTTGGAGTCATTGAC 2112
Query 2190 ATTTTACAAGATTACGACATAAGCAAGAAGATCGAGCATGCTTACAAGTCTCTACAAGCT 2249
|| || ||||| |||||||||| ||| || ||||||||||| || ||||| ||||||||
Sbjct 2113 ATCTTGCAAGACTACGACATAACCAAAAAAATCGAGCATGCGTATAAGTCACTACAAGCC 2172
Query 2250 GACCCGGCTTCAATCTCTGCCGTTGATCCCAAACTATACTCAA-GAAGGTTTAGAGATTT 2308
|| || ||||| ||||| || |||||||| || || || |||| || |||| ||||| ||
Sbjct 2173 GATCCTGCTTCGATCTCAGCTGTTGATCCTAAGCTCTATTCAAAGA-GGTTCAGAGACTT 2231
Query 2309 CATCAGCAGAATCTTCATCGAAGACGGCTAAA-ATGAAG 2346
|||||| || |||||||| ||||||||||||| || |||
Sbjct 2232 CATCAGTAGGATCTTCATTGAAGACGGCTAAAGATAAAG 2270
> Ahg887765 jgi|Araly1|887765|Al_scaffold_0089_4
Length=300
Score = 505 bits (273), Expect = 8e-142
Identities = 291/300 (97%), Gaps = 0/300 (0%)
Strand=Plus/Plus
Query 2040 AAACCATTGATTCGATTAGGCGCAAACATGCCTGCAAGAGCAGAACGAATGGCGAGAAGA 2099
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 AAACCATTGATTCGATTAGGCGCAAACATGCCTGCAAGGGCAGAACGAATGGCGAGAAGA 60
Query 2100 AGCGACTATGATCAGTATTCCTCAGGAGGGACCAACTACCAATCTCATGGAGAGGTCTAC 2159
||||||||||||||||||||||| |||||||||||||| | |||||| ||||||||||||
Sbjct 61 AGCGACTATGATCAGTATTCCTCTGGAGGGACCAACTATCTATCTCACGGAGAGGTCTAC 120
Query 2160 GAAGTGGTTCTATATTTTGGAATCATTGACATTTTACAAGATTACGACATAAGCAAGAAG 2219
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 GAAGTGGTTCTATATTTTGGAATCATTGACATATTACAAGATTACGACATAAGCAAGAAG 180
Query 2220 ATCGAGCATGCTTACAAGTCTCTACAAGCTGACCCGGCTTCAATCTCTGCCGTTGATCCC 2279
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 181 ATCGAGCATGCTTACAAGTCTCTACAAGCTGATCCGGCTTCAATCTCAGCCGTTGATCCC 240
Query 2280 AAACTATACTCAAGAAGGTTTAGAGATTTCATCAGCAGAATCTTCATCGAAGACGGCTAA 2339
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAACTATACTCAAGAAGGTTCAGAGATTTCATCAGCAGAATCTTCATCGAAGACGGCTAA 300
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101777134640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5