BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G77760.1 Length=3034 Score E Sequences producing significant alignments: (Bits) Value Ahg927178 jgi|Araly1|927178|scaffold_202739.1 4364 0.0 > Ahg927178 jgi|Araly1|927178|scaffold_202739.1 Length=2803 Score = 4364 bits (2363), Expect = 0.0 Identities = 2666/2811 (95%), Gaps = 25/2811 (1%) Strand=Plus/Plus Query 59 ACCGGTTCAATCACTAAACCATGGCGACCTCCGTCGATAACCGCCATTAT------C-C- 110 |||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 1 ACCGGTTCAATCACTAAACCATGGCGACCTCCGTCGATAACCGCCATTATCCCCGCCTCA 60 Query 111 -CA---CCATGAACGGCGTCGCTCACGCCTTCAAACCTCCTCTCGTTCCTTCTCCTCGCT 166 || ||||||||||||||| |||||| |||||||||||||||||||||||||| |||| Sbjct 61 ACACCGCCATGAACGGCGTCGTTCACGCTTTCAAACCTCCTCTCGTTCCTTCTCCCCGCT 120 Query 167 CATTCGACCGCCACCGTCACCAAAACCAAACTCTCGACGTCATCCTCACCGAAACTAAAA 226 |||||||||||||||||||||||||||| ||||||||| || |||||| || |||| Sbjct 121 CATTCGACCGCCACCGTCACCAAAACCAGTCTCTCGACG---TCGTCACCG-AA--AAAA 174 Query 227 TCGTCAAAGAAACCGAAGTCAT---CACCACCGTCGTAGACAGTTACGACGACTCCTCAA 283 |||||||||||||||||||||| ||||||||||| |||||||||||||||||| || | Sbjct 175 TCGTCAAAGAAACCGAAGTCATCACCACCACCGTCGCAGACAGTTACGACGACTCTTCCA 234 Query 284 GCGACGACGAAGACGAGAGCCATAACCGTAACGTCCCTTACTACAAAGAGCTGGTTAAAA 343 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 235 GCGACGACGAAGACGAGAGCCATAACCGTAACGTCCCATACTACAAAGAGCTGGTTAAAA 294 Query 344 AATCAAACAGCGATTTAGAACCGTCGATTTTAGATCCGAGAGATGAATCAACGGCTGATA 403 |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 295 AATCCAACAGCGATTTAGAACCGTCGATTTTAGATCCGAGAGATGAATCAACTGCTGATA 354 Query 404 GTTGGATTCAACGTAACTCATCCATGCTCCGTCTCACCGGAAAACATCCATTCAACGCCG 463 ||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct 355 GTTGGATCCAACGTAACTCCTCCATGATCCGTCTCACCGGAAAACATCCATTCAACGCCG 414 Query 464 AAGCACCTCTTCCTCGTCTTATGCACCATGGATTCATCACTCCAGTTCCACTCCATTACG 523 |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 415 AAGCACCTCTCCCTCGTCTTATGCACCATGGATTCATCACTCCAGTCCCACTCCATTACG 474 Query 524 TCCGCAACCACGGTGCAGTTCCCAAAGCGAATTGGTCAGACTGGTCAATCGAAATTACCG 583 ||||||||||||| ||||||||||||||||||||||| || |||||||||||||| |||| Sbjct 475 TCCGCAACCACGGCGCAGTTCCCAAAGCGAATTGGTCCGATTGGTCAATCGAAATCACCG 534 Query 584 GACTCGTTAAACGTCCGGCTAAATTCACCATGGAAGAGCTAATCTCCGAGTTCCCCAGCC 643 ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 535 GACTCGTCAAACGTCCGGCGAAATTCACCATGGAAGAGCTAATCTCCGAGTTCCCCAGCC 594 Query 644 GCGAATTCCCGGTGACACTCGTCTGCGCCGGTAATCGCCGCAAGGAACAGAACATGGTGA 703 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 595 GCGAATTCCCGGTAACACTCGTCTGCGCCGGTAACCGCCGCAAGGAACAGAACATGGTGA 654 Query 704 AACAAACGATCGGATTCAATTGGGGATCCGCCGGAGTATCTACTTCTCTATGGAAAGGTA 763 |||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||| Sbjct 655 AACAAACGATCGGATTCAATTGGGGATCCGCCGGAGCATCAACTTCTCTCTGGAAAGGTG 714 Query 764 TTCCGTTAAGCGAAATCCTCCGTCGATGCGGGATCTATAGCCGGAGAGGAGGCGCGTTAA 823 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 715 TTCCGTTAAGCGAAATCCTCCGTCGATGCGGGATCTATAGCCGGAGAGGCGGCGCGTTAA 774 Query 824 ACGTTTGCTTCGAAGGAGCGGAGGATCTTCCCGGCGGCGGCGGATCTAAATACGGAACAA 883 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 775 ACGTTTGCTTCGAAGGAGCGGAGGATCTTCCCGGCGGCGGCGGATCGAAATACGGAACAA 834 Query 884 GTATTAAGAAGGAGATGGCGATGGATCCGGCTAGAGATATTATCTTAGCTTATATGCAAA 943 |||||||||| |||||||| |||||||| |||||||||||||| |||||||||||||||| Sbjct 835 GTATTAAGAAAGAGATGGCTATGGATCCTGCTAGAGATATTATATTAGCTTATATGCAAA 894 Query 944 ACGGCGAGCTTTTAACGCCGGATCATGGGTTTCCGGTTCGGGTCATTGTACCGGGTTTCA 1003 |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 895 ACGGTGAGCTTTTAACGCCGGATCATGGGTTTCCGGTTCGGGTCATTGTACCCGGTTTTA 954 Query 1004 TCGGTGGTCGGATGGTTAAATGGTTAAAGAGAATCATCGTCACGCCTCAAGAATCTGACA 1063 ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 955 TCGGTGGCCGGATGGTTAAATGGTTAAAGCGAATCATCGTCACGCCTCAAGAATCTGACA 1014 Query 1064 GTTACTATCACTATAAAGACAATCGAGTCCTTCCTTCTCTCGTTGATGCTGAGCTGGCAA 1123 |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1015 ATTACTATCACTACAAAGACAATCGAGTCCTTCCTTCTCTTGTTGATGCTGAGCTGGCAA 1074 Query 1124 ATTCCGAAGCTTGGTGGTATAAGCCTGAATACATAATCAACGAGCTTAATATAAACTCGG 1183 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1075 ATTCCGAAGCTTGGTGGTATAAGCCTGAATACATAATCAACGAGCTTAATGTAAACTCGG 1134 Query 1184 TGATTACAACACCTGGTCACGCAGAGATTTTACCGATTAATGCATTCACTACTCAGAAGC 1243 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1135 TGATTACAACACCTGGTCACGAAGAGATTTTACCGATTAATGCATTCACTACTCAGAAGC 1194 Query 1244 CGTACACATTAAAAGGCTACGCTTATTCTGGAGGAGGTAAGAAGGTAACGAGGGTTGAGG 1303 ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct 1195 CGTACACATTAAAAGGCTACGCTTACTCTGGAGGAGGTAAGAAGGTAACGAGAGTTGAGG 1254 Query 1304 TGACTCTAGACGGAGGAGACACGTGGAGTGTTTGTGAGCTTGACCACCAGGAGAAACCGA 1363 |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1255 TGACTCTAGATGGAGGAGACACGTGGAGTGTTTGTGAGCTTGACCACCAAGAGAAACCGA 1314 Query 1364 ACAAGTACGGTAAATTCTGGTGCTGGTGTTTCTGGTCACTTGACGTTGAGGTTCTTGATC 1423 |||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1315 ACAAGTACGGCAAGTTCTGGTGCTGGTGTTTCTGGTCACTAGACGTTGAGGTTCTTGATC 1374 Query 1424 TGCTCAGTGCTAAAGACGTCGCGGTTCGAGCCTGGGACGAGTCTTTCAATACTCAGCCTG 1483 |||||||||||||||||||||||||||||||||||||||||||||| || || ||||||| Sbjct 1375 TGCTCAGTGCTAAAGACGTCGCGGTTCGAGCCTGGGACGAGTCTTTGAACACCCAGCCTG 1434 Query 1484 ATAAACTCATCTGGAACCTCATGGGGATGATGAACAATTGCTGGTTCAGGATTAGGACCA 1543 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1435 ATAAACTCATCTGGAACCTCATGGGGATGATGAACAATTGCTGGTTCAGGATTAGAACCA 1494 Query 1544 ACGTGTGCAAGCCTCATAGAGGAGAGATAGGGATAGTTTTCGAACACCCGACCAGACCCG 1603 |||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||| Sbjct 1495 ACGTGTGCAAGCCTAATAGAGGAGAGATAGGGATAGTTTTCGAACATCCGACCCGACCCG 1554 Query 1604 GAAACCAGTCGGGTGGGTGGATGGCAAAGGAGCGTCAGCTTGAGATTTCCTCAGAATCCA 1663 ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 1555 GAAACCAGTCGGGTGGGTGGATGGCAAAGGAACGTCAGCTTGAGATTTCCTCTGAATCCA 1614 Query 1664 A-CAATACCTTGAAGAAATCTGTCTCATCTCCTTTCATGAACACTGCCTCGAAGATGTAT 1722 | ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1615 ACCAA-ACCTTGAAGAAATCTGTCTCATCTCCTTTCATGAACACTGCCTCAAAGATGTAT 1673 Query 1723 TCAATCTCTGAAGTTAGAAAACACAACACTGCTGACTCTGCATGGATCATCGTCCACGGT 1782 ||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1674 TCAATGTCCGAAGTTAGAAAACACAACTCTGCTGACTCTGCATGGATCATCGTCCACGGT 1733 Query 1783 CACATCTATGACTGTACACGTTTCTTGAAAGATCATCCAGGAGGCACAGATTCTATCCTG 1842 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1734 CACATCTATGACTGTACACGTTTCTTGAAAGATCATCCAGGAGGCACAGATTCTATCCTC 1793 Query 1843 ATAAACGCAGGTACAGATTGCACCGAAGAGTTTGAAGCCATTCACTCTGACAAAGCCAAG 1902 || |||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 1794 ATTAACGCAGGAACAGATTGCACCGAAGAGTTTGAAGCTATTCATTCTGACAAAGCCAAG 1853 Query 1903 AAGCTTTTGGAAGATTACCGTATCGGTGAACTCATCACCACTGGCTACGACTCTTCCCCT 1962 |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1854 AAGCTTTTAGAAGATTACCGTATCGGTGAACTCATCACTACTGGCTACGACTCTTCCCCT 1913 Query 1963 AACGTCTCAGTTCATGGTGCCTCAAACTTTGGTCCTTTGTTAGCTCCAATCAAAGAGCTA 2022 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1914 AACGTCTCAGTCCATGGTGCCTCAAACTTAGGTCCTTTGTTAGCTCCAATCAAAGAGCTA 1973 Query 2023 ACTCCTCAAAAGAACATTGCTTTGGTCAACCCACGTGAGAAAATCCCGGTTAGGCTCATT 2082 ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 1974 GCTCCTCAAAAGAACATTGCTTTGGTTAACCCACGTGAGAAAATCCCGGTTAGACTCATC 2033 Query 2083 GAGAAGACTTCGATCTCGCACGACGTTCGTAAGTTCCGATTCGCATTACCA-TCAGAAGA 2141 ||||||||||||||||| ||||||||||||| |||| ||||||||||||| | |||||| Sbjct 2034 GAGAAGACTTCGATCTCTCACGACGTTCGTAGGTTCAGATTCGCATTACCGGT-AGAAGA 2092 Query 2142 TCAACAGCTTGGTTTACCCGTGGGGAAGCACGTTTTCGTTTGCGCCAACATAAACGACAA 2201 |||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||| Sbjct 2093 TCAACAGCTTGGTTTACCTGTGGGGAAGCACGTTTTCGTCTGCGCCAATATAAACGACAA 2152 Query 2202 ACTCTGTCTCAGAGCTTATACTCCCACCAGCGCCATCGACGCGGTTGGTCATATCGACCT 2261 |||||||||||||||||||||||| || |||||||||||||| |||||||||||||||| Sbjct 2153 ACTCTGTCTCAGAGCTTATACTCCAACTAGCGCCATCGACGCCATTGGTCATATCGACCT 2212 Query 2262 CGTCGTCAAAGTTTACTTCAAAGACGTTCATCCAAGGTTTCCCAATGGTGGACTCATGTC 2321 |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 2213 AGTCGTCAAAGTTTACTTCAAAGACGTCCATCCAAGGTTTCCCAATGGAGGACTCATGTC 2272 Query 2322 TCAACACTTAGACTCGTTACCAATCGGGTCAATGATAGATATCAAAGGTCCACTAGGGCA 2381 |||||||||||||||||||||||||||||||||||||| |||||||||||| |||| || Sbjct 2273 ACAACACTTAGACTCGTTACCAATCGGGTCAATGATAGACATCAAAGGTCCATTAGGACA 2332 Query 2382 CATCGAGTACAAAGGCAAAGGCAACTTCCTGGTCAGCGGCAAACCTAAGTTTGCCAAGAA 2441 ||||||||||||||| | |||||||||| |||||||||||||||| |||||||| ||||| Sbjct 2333 CATCGAGTACAAAGGTAGAGGCAACTTCTTGGTCAGCGGCAAACCCAAGTTTGCTAAGAA 2392 Query 2442 ACTAGCAATGCTCGCCGGAGGAACAGGCATCACTCCTATCTACCAGATCATTCAATCTAT 2501 |||||| ||||||||||||||||||||||| ||||| || |||||||||||||||||||| Sbjct 2393 ACTAGCCATGCTCGCCGGAGGAACAGGCATTACTCCGATATACCAGATCATTCAATCTAT 2452 Query 2502 ATTGAGTGATCCAGAGGACGAAACCGAGATGTATGTGGTTTACGCAAACAGAACCGAGGA 2561 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2453 ATTGAGTGATCCAGAGGACGAAACCGAGATGTATGTGGTTTACGCAAACAGAACCGAGGA 2512 Query 2562 TGACATTCTTGTGAGGGAAGAGCTAGAAGGATGGGCTAGTAAGCATAAGGAGAGGCTAAA 2621 |||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 2513 TGACATACTCGTGAGGGAGGAGCTAGAAGGATGGGCTAGTAAGCATAAGGAGAGGCTAAA 2572 Query 2622 GATTTGGTACGTCGTTGAAATCGCAAAGGAAGGTTGGAGTTACAGTACCGGGTTTATAAC 2681 ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| || Sbjct 2573 GATTTGGTACGTCGTTGAAATCGCAAAAGAAGGTTGGAACTACAGTACCGGGTTTATTAC 2632 Query 2682 TGAAGCTGTGCTTAGGGAACATATCCCTGAAGGTTTGGAAGGCGAATCGCTAGCACTCGC 2741 ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 2633 CGAAGCTGTGCTTAGGGAACATATCCCTGAAGGTTTGGAAGGCGAATCCCTCGCACTCGC 2692 Query 2742 ATGCGGACCACCGCCTATGATTCAGTTTGCGTTGCAGCCAAATCTAGAGAAGATGGGTTA 2801 ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 2693 ATGCGGACCACCGCCTATGATTCAGTTCGCGTTGCAGCCGAATCTAGAGAAGATGGGTTA 2752 Query 2802 CAACGTGAAGGAGGATCTCTTAATCTTCTAGATTTGCTCAAGTTCTGTGCT 2852 ||||||||||||||||||||| |||||||||||||||||||||| | |||| Sbjct 2753 CAACGTGAAGGAGGATCTCTTGATCTTCTAGATTTGCTCAAGTTATATGCT 2803 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 114575456960 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5