BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77850.1
Length=2076
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927187 jgi|Araly1|927187|scaffold_202748.1 2368 0.0
> Ahg927187 jgi|Araly1|927187|scaffold_202748.1
Length=1762
Score = 2368 bits (1282), Expect = 0.0
Identities = 1586/1732 (92%), Gaps = 23/1732 (1%)
Strand=Plus/Plus
Query 70 GTTTACACTGAAAACAAATACCTATGTCACCGCCGTCGGCAACCGCCGGTGACATCAACC 129
||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTTTACAGTGATAACAGATACCTATGTCACCGCCGTCGGCAACCGCCGGTGACATCAACC 60
Query 130 ACCGTGAAGTAGACCCGACGATCTGGCGCGCTTGTGCTGGAGCCTCCGTCCAGATCCCTG 189
||||| |||| ||||| | ||||||||||||||||||||| |||||||| |||||||||
Sbjct 61 ACCGTCAAGTCGACCCAAGGATCTGGCGCGCTTGTGCTGGTGCCTCCGTTCAGATCCCTC 120
Query 190 TCCTTC-ACTCTAGGGTTTACTACTTTCCACAAGGTCACGTTGAGCACTGTTGCCCTCTC 248
||| || ||||||||||||||||||| || |||||||| || ||||||||||||||||||
Sbjct 121 TCC-TCTACTCTAGGGTTTACTACTTCCCTCAAGGTCATGTGGAGCACTGTTGCCCTCTC 179
Query 249 CTCTCTACTCTTCCTTCCTCCACCTCGCCGGTTCCATGTATCATCACTTCAATTCAGTTG 308
|||||||||||||||| || ||||| |||||||||||| |||||||||| || ||||||
Sbjct 180 ATCTCTACTCTTCCTTCGTCTACCTCTCCGGTTCCATGTCTCATCACTTCCATCCAGTTG 239
Query 309 CTCGCCGATCCGGTCACCGACGAGGTCTTTGCTCACCTTATTCTTCAACCGATGACGCAG 368
|||||||||||| |||| |||||||| |||||||||||| ||||||||||| ||||||||
Sbjct 240 CTCGCCGATCCGATCACTGACGAGGTTTTTGCTCACCTTGTTCTTCAACCGGTGACGCAG 299
Query 369 CAGCAGTTTACTCCGACTAATTATTCACGATTCGGCAGATTCGATGGCGATGTTGATGAT 428
|||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||
Sbjct 300 GAGCAGTTTACTCCGACTAATTATTCAAGATTCGGTAGATACGATGGCGATGTTGATGAT 359
Query 429 AACAACAAGGTGACTACCTTCGCCAAAATTCTCACGCCTTCTGATGCTAACAATGGAGGT 488
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 360 AACAACAAGGTGACTACCTTCGCCAAGATTCTCACGCCTTCTGATGCTAACAATGGAGGT 419
Query 489 GGCTTCTCCGTTCCTCGTTTCTGTGCTGATTCCGTCTTCCCTCTGCTTAATTTTCAAATC 548
|| || || ||||||||||||||||||||||||||||| |||| |||| |||||||||||
Sbjct 420 GGATTTTCGGTTCCTCGTTTCTGTGCTGATTCCGTCTTTCCTCCGCTTGATTTTCAAATC 479
Query 549 GATCCACCGGTTCAGAAGCTCTACGTCACTGATATCCATGGAGCTGTTTGGGATTTCAGG 608
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 480 GATCCACCGGTTCAGAAGCTCTACATCACCGATATCCATGGAGCTGTTTGGGATTTCAGG 539
Query 609 CATATCTATCGCGGTACACCGAGGCGTCACTTGCTAACAACGGGATGGAGTAAGTTCGTC 668
||||||||||||||||||||||||||||||||| |||| || |||||||| ||||||||
Sbjct 540 CATATCTATCGCGGTACACCGAGGCGTCACTTGTTAACCACCGGATGGAGCAAGTTCGTG 599
Query 669 AATAGCAAGAAGCTCATCGCTGGAGATTCGGTGGTGTTTATGAGAAAATCTGCAGATGAG 728
|||||||||||||| |||||||| |||||||||||||||||||| ||| |||||||||||
Sbjct 600 AATAGCAAGAAGCTAATCGCTGGCGATTCGGTGGTGTTTATGAGGAAAGCTGCAGATGAG 659
Query 729 ATGTTCATCGGCGTTAGGAGAACTCCGATCTCAAGCAGCGACGGAGGAAGTAGCTATTAC 788
||||| || || |||||| |||| |||||||||||||||| ||||||||| |||||||||
Sbjct 660 ATGTTTATGGGTGTTAGGCGAACACCGATCTCAAGCAGCGGCGGAGGAAGCAGCTATTAC 719
Query 789 GGAGGAGATGAGTATAACGGTTACTACAGTCAGAGTAGCGTTGCCAAGGAAGATGATGGG 848
|| || |||||||| ||||| || ||||| |||||||||||||| ||||||||||| |||
Sbjct 720 GGCGGGGATGAGTACAACGGCTATTACAGCCAGAGTAGCGTTGCTAAGGAAGATGACGGG 779
Query 849 AGTCCGAAGAAGACGTTTAGGAGATCTGGGAATGGTAAGTTGACTGCTGAGGCTGTGACG 908
||| ||||||||||||||||||| |||||||| || || ||||| |||||||||||||||
Sbjct 780 AGTGCGAAGAAGACGTTTAGGAGGTCTGGGAAAGGGAAATTGACCGCTGAGGCTGTGACG 839
Query 909 GATGCGATCAATAGAGC-GTCTCAGGGATTACCATTTGAGGTGGTGTTTTATCCGGCTGC 967
|| |||||||||||||| | || ||||||| |||||||||||||||| ||||||| ||||
Sbjct 840 GAGGCGATCAATAGAGCAG-CTAAGGGATTGCCATTTGAGGTGGTGTATTATCCGACTGC 898
Query 968 TGGATGGTCTGAGTTTGTTGTGAGAGCTGAAGATGTTGAGTCTTCAATGTCTATGTATTG 1027
||||||||| || ||||| ||||||||||||||||||||||| || |||||||||| |||
Sbjct 899 TGGATGGTCAGAATTTGTGGTGAGAGCTGAAGATGTTGAGTCCTCCATGTCTATGTTTTG 958
Query 1028 GACTCCTGGGACTCGAGTCAAGATGGCTATGGAGACTGAAGATTCTTCTCGGATCACATG 1087
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 959 GACTCCTGGGACTCGAGTCAAGATGGCTATGGAGACTGAGGATTCCTCTCGGATCACTTG 1018
Query 1088 GTTTCAAGGCATCGTTTCCTCTACTTATCAGGAGACCGGTCCATGGCGTGGATCTCCATG 1147
|||||| ||||| ||||||||||||||||| || || |||||||||||||||||||||||
Sbjct 1019 GTTTCAGGGCATTGTTTCCTCTACTTATCAAGAAACTGGTCCATGGCGTGGATCTCCATG 1078
Query 1148 GAAGCAGCTTCAGATCACATGGGATGAACCTGAGATTCTGCAAAACGTGAAGAGGGTGAA 1207
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 GAAACAGCTTCAGATCACATGGGATGAACCTGAGATTCTGCAAAACGTGAAGAGGGTGAA 1138
Query 1208 TCCATGGCAAGTGGAAATTGCTGCACATGCAACTCAACTGCATACCCCTTTCCCTCCAGC 1267
||| |||||||||||||||| |||| ||||||| ||||| ||| | |||||||||||||
Sbjct 1139 TCCTTGGCAAGTGGAAATTGTTGCAAATGCAACCCAACTTCATGCTACTTTCCCTCCAGC 1198
Query 1268 AAAGAGGTTGAAGTATCCACAACCCGGAGGAGGGTTCTTGAGTGGAGATGATGGAGAAAT 1327
|||||| |||||||||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct 1199 AAAGAGATTGAAGTATCCACAACCC---GGAGGGTTCTTGAGTGGAGATGACGGAGATAT 1255
Query 1328 CCTTTATCCTCAAAGTGGACTGTCTAGTGCAGCAGCACCTGATCCAAGTCCTTCTATGTT 1387
|| ||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1256 CCCCTATTCTCAAAGAGGACTGTCTAGTGCAGCAGCACCTGATCCAAGTCCTTATATGTT 1315
Query 1388 CTCGTATTCTACATTTCCTGCTGGCATGCAGGGAGCCAGGCAATATGATTTTGGGTCTTT 1447
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 CCCGTATTCTACATTTCCTGCTGGCATGCAGGGAGCCAGGCAATATGATTTTGGGTCTTT 1375
Query 1448 CAATCCAACCGGATTCATTGGAG-GAAATCCTCCCCAG-CTATTCACCAATAACTTCTTA 1505
||||||||||||||||||||||| ||| |||||||||| | || |||||||||||||||
Sbjct 1376 CAATCCAACCGGATTCATTGGAGAGAA-TCCTCCCCAGTC-ATGCACCAATAACTTCTTC 1433
Query 1506 AGTCCGCTTCCT---GATTTGGGAAAAGTGTCGACTGAGATGATGAACTTTGGCAGTCCG 1562
||||||||||| | ||||||||||||||||||||||||| | |||||||||||
Sbjct 1434 AGTCCGCTTCCAACCGGGTTGGGAAAAGTGTCGACTGAGATGA--AT-TTTGGCAGTCCA 1490
Query 1563 CCATCAGATAACTTATCGCCTAATAGCAACACCACTAATCTGTCCTCTGGAAATGACCTG 1622
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1491 CCATCAGATAACTTATCGCCTAATAGCAACACCACTAATCTGTCCTCTGGAAACGACCTG 1550
Query 1623 GTTGGAAACCGAGGCCCCC-TTTCAA-AGAAAGTTAACTCGATTCAGTTGTTTGGCAAGA 1680
||||||||||||| ||||| ||||| | |||| ||||||||||| ||| ||||||||||
Sbjct 1551 GTTGGAAACCGAG-CCCCCATTTCAGCA-AAAGCTAACTCGATTCGGTTATTTGGCAAGA 1608
Query 1681 TCATTACCGTGGAGGAGCATTCTGAGAGCGGTCCTGCAGAGTCTGGCTTGTGTGAAGAGG 1740
|||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1609 CCATTACCGTGCAGGAGCGTTCTGAGAGCGGTCTTGCAGAGTCTGGCTTGTGTGAAGAGG 1668
Query 1741 ATGGCAGCAAAGAGTCCAGCGACAATGAGACACAGTTGTCCTT-ATCACATG 1791
|||||||||||||||||||||||||||||||||| |||||||| | ||||||
Sbjct 1669 ATGGCAGCAAAGAGTCCAGCGACAATGAGACACAATTGTCCTTGA-CACATG 1719
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78085002250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5