BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G77920.1 Length=1826 Score E Sequences producing significant alignments: (Bits) Value Ahg909416 jgi|Araly1|909416|Al_scaffold_0002_2497 1000 0.0 Ahg472441 jgi|Araly1|472441|fgenesh2_kg.1__2395__AT1G22070.1 159 5e-38 > Ahg909416 jgi|Araly1|909416|Al_scaffold_0002_2497 Length=1119 Score = 1000 bits (541), Expect = 0.0 Identities = 640/685 (93%), Gaps = 17/685 (2%) Strand=Plus/Plus Query 887 TTAGGACCATCTGGGAGTATTAACACAGGGATTGCATCATTTGAGATGGAATATTCACAC 946 ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 451 TTAGGACTATCTGGGAGTATTAACACAGGGATTGCTTCATTTGAGATGGAATATTCACAC 510 Query 947 TGGCTACAAGAACAAAGCAGAAGAGTTAGCGAACTACGAACAGCGCTTCAATCTCATATA 1006 ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 511 TGGCTTCAAGAACAAAGCAGGAGAGTTAGCGAACTACGAACAGCGCTTCAATCTCATATA 570 Query 1007 AGCGACATAGAACTCAAGATGCTAGTAGAGAGTTGCTTGAACCATTACGCTAATCT-TTT 1065 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 571 AGCGACATAGAACTCAAGATGCTAGTAGAGAGTTGCTTGAACCATTACGCGAATCTGTTT 630 Query 1066 CCAAATGAAATCCGATGCAGCAAAAGCCGATGTTTTCTACTTGATATCGGGAATGTGGCG 1125 | ||||||||| |||||||| ||||| |||||||||||||||||||||||||||||| | Sbjct 631 -CGAATGAAATCTGATGCAGCGAAAGCAGATGTTTTCTACTTGATATCGGGAATGTGGAG 689 Query 1126 AACTTCAACCGAAAGATTCTTCCAATGGATTGGAGGGTTTCGTCCATCCGAACTTTTAAA 1185 ||||||||| ||||| ||||| || ||||||||||| |||||||||||||| |||||||| Sbjct 690 AACTTCAACTGAAAGGTTCTTTCAGTGGATTGGAGGATTTCGTCCATCCGAGCTTTTAAA 749 Query 1186 CGTTGTGATGCCTTATCTTCAACCATTAACGGATCAACAAATCTTGGAAGTGAGAAACCT 1245 |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct 750 CGTTGTGATGCCTTATCTTCAACCATTAACCGATCAACAAGTCTTGGAAGTGAGAAACCT 809 Query 1246 CCAACAATCATCACAACAAGCAGAGGATGCTCTGTCTCAAGGGATTGATAAACTTCAACA 1305 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 810 CCAACAATCATCACAACAAGCAGAGGATGCTCTGTCTCAAGGGATTGATAAACTTCAACA 869 Query 1306 GAGTTTAGCTGAAAGCATTGTGATTGATGCGGTTATCGAGTCCACGCATTATCCCACTCA 1365 |||||||||||||||||||||||||||||||||||||||||| | | || | Sbjct 870 GAGTTTAGCTGAAAGCATTGTGATTGATGCGGTTATCGAGTC------T---C--AC--A 916 Query 1366 CATGGCTGCAGCTATAGAGAATCTTCAAGCATTAGAAGGATTTGTGAATCAAGCAGATCA 1425 |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 917 --TGGCTGCAGCAATAGAGAATCTTCAAGCATTAGAGGGATTTGTGAATCAAGCAGATCA 974 Query 1426 TCTGAGGCAACAAACTTTGCAACAAATGGCGAAGATCTTAACGACAAGACAATCGGCTCG 1485 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 975 TCTGAGGCAACAAACTTTGCAACAAATGGCGAAGATCTTGACGACAAGACAATCAGCTCG 1034 Query 1486 AGGTTTACTAGCTTTAGGAGAGTATCTTCATAGACTTCGTGCTCTTAGTTCTCTTTGGGC 1545 |||| |||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1035 AGGTCTACTTGCTTTGGGAGAGTATCTTCACAGACTTCGTGCTCTTAGTTCTCTTTGGGC 1094 Query 1546 AGCTCGTCCACAAGAACCAACTTAA 1570 ||||||||||| |||||| |||||| Sbjct 1095 AGCTCGTCCACGAGAACCCACTTAA 1119 Score = 688 bits (372), Expect = 0.0 Identities = 404/419 (96%), Gaps = 3/419 (1%) Strand=Plus/Plus Query 464 ATGATGAGTTCTTCTTCTCCAACACAACTTGCATCTTTAAGAGACATGGGAATCTATGAG 523 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGATGAGTTCTTCTTCTCCAACACAACTTGCATCTTTAAGAGACATGGGAATCTATGAG 60 Query 524 CCATTTCAACAAATTGTCGGTTGGGGAAATGTTTTCAAATCTGATATCAATGATCATAGT 583 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CCATTTCAACAAATTGTCGGTTGGGGAAATGTTTTCAAATCTGATATCAATGATCATAGT 120 Query 584 CCCAATACTGCTACTTCCTCTATTATTCAGGTTGATCCTAGAATTGATGATCACAACAAC 643 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 121 CCCAATACTGCTACTTCCTCGATTATTCAGGTTGATCCTAGAATTGATGATCACAACAAC 180 Query 644 AACATCAAGATAAATTATGATTCTTCTCATAACCAGATCGAAGCAGAACAACCTTCTAGT 703 | ||||||| |||||||||||||| |||||||||| ||||||||||||||| |||||| Sbjct 181 --C-TCAAGATGAATTATGATTCTTCGCATAACCAGAACGAAGCAGAACAACCATCTAGT 237 Query 704 AATGATAATCAAGATGATGATGGCAGGATTCATGATAAGATGAAACGGCGTTTAGCGCAG 763 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 238 AATGATAATCAAGATGATGATGGCAGGACTCATGATAAGATGAAACGGCGTTTAGCGCAG 297 Query 764 AACCGAGAAGCGGCTCGCAAAAGTCGTTTGAGAAAGAAGGCTTATGTTCAGCAGTTAGAG 823 ||||| ||||| |||||||||||||||||||||||||||||||||||||| ||| |||| Sbjct 298 AACCGTGAAGCTGCTCGCAAAAGTCGTTTGAGAAAGAAGGCTTATGTTCAACAGCTAGAA 357 Query 824 GAAAGCCGGTTAAAGTTATCGCAGTTAGAGCAAGAACTCGAAAAGGTTAAGCAGCAGGG 882 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 358 GAAAGCCGGTTAAAGTTATCGCAGTTAGAGCAAGAACTCGAAAAGGCTAAGCAGCAGGG 416 > Ahg472441 jgi|Araly1|472441|fgenesh2_kg.1__2395__AT1G22070.1 Length=1742 Score = 159 bits (86), Expect = 5e-38 Identities = 143/170 (84%), Gaps = 5/170 (3%) Strand=Plus/Plus Query 693 AACCTTCTAGTAATGATAATCAAGATGATGATGGCAGGATTC-ATGATAAGATGAAACGG 751 ||||||| |||||| || |||| || || || | ||| || ||||||||||||||||| Sbjct 547 AACCTTCGAGTAATAATGATCACGACGAAGA--AC-GGA-TCAATGATAAGATGAAACGG 602 Query 752 CGTTTAGCGCAGAACCGAGAAGCGGCTCGCAAAAGTCGTTTGAGAAAGAAGGCTTATGTT 811 ||||| || |||||| ||||||| ||||||||||||||||||||||||||||| |||| Sbjct 603 CGTTTGGCTCAGAACAGAGAAGCTGCTCGCAAAAGTCGTTTGAGAAAGAAGGCCCATGTG 662 Query 812 CAGCAGTTAGAGGAAAGCCGGTTAAAGTTATCGCAGTTAGAGCAAGAACT 861 || |||||||| ||||| ||||||||||| || ||| | ||||| ||||| Sbjct 663 CAACAGTTAGAAGAAAGTCGGTTAAAGTTGTCACAGCTCGAGCAGGAACT 712 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68562441000 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5