BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G78040.1 Length=938 Score E Sequences producing significant alignments: (Bits) Value Ahg476963 jgi|Araly1|476963|fgenesh2_kg.2__2093__AT1G78040.1 1186 0.0 Ahg927208 jgi|Araly1|927208|scaffold_202769.1 667 0.0 Ahg909428 jgi|Araly1|909428|Al_scaffold_0002_2509 289 3e-77 > Ahg476963 jgi|Araly1|476963|fgenesh2_kg.2__2093__AT1G78040.1 Length=871 Score = 1186 bits (642), Expect = 0.0 Identities = 812/889 (91%), Gaps = 32/889 (4%) Strand=Plus/Plus Query 1 AACGGTGTGGGCTAATCTCACGCGCTTTCATCA---TCTT-CTTCCTAGATTCGCTCCTC 56 ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 1 AACGGTGTGGGCTAATCTCACGCGCTTTCATCATCTTCTTCCTTCCTAGATTCGCTCCTC 60 Query 57 CACTGTCTTAAATTTCACTAtcttcttcttcattttccttccttctcacttcaaatccat 116 |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| Sbjct 61 CACTGTCTTAAATTTCACTA---TCTTCTTCA-TTTCCTTCCTTCTCACTTCAAATCCAT 116 Query 117 aatcgctctacttctctctctctctctAGATTCGAAAAAATGGCGAAACTGGTGATGTTG 176 ||| ||| | || ||||||||||||| || ||||||||||||||||||||||||| Sbjct 117 AAT--CTC-GC--AACT-TCTCTCTCTAGATCCG-AAAAATGGCGAAACTGGTGATGTTG 169 Query 177 TTGGTTCTCTGTATCTTACCGGCGATAGCCATGGCGGCAAGGAGGGGAAATATTGGAAAG 236 ||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||| Sbjct 170 TTGGTTCTCTGTATCTTGCCGGCGATAGCCATGGCCGC---GAGGGGAAATATTGGAAAG 226 Query 237 AATACAATGGTGGTTCAAGGTAGCACCTACTGTGACATTTGCAAATTCGGCTTCGAGACT 296 ||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||| Sbjct 227 AATACAATGGTGGTTCAAGGTCGCACTTACTGTGACCTTTGCAAATTCGGCTTCGAGACT 286 Query 297 CCTGAATCCTCCTACTTCATCCCCGGTGCAACGGTGAAGCTATCATGCAAAGACAGGAAG 356 ||||| || |||||||||||||||||||||||||||||||| ||||||| |||||||||| Sbjct 287 CCTGAGTCATCCTACTTCATCCCCGGTGCAACGGTGAAGCTTTCATGCAGAGACAGGAAG 346 Query 357 ACAATGGAAGAGGTTTACACAGACAAAGCTGTATCAGACAAAGAAGGAAAGTATAAGTTC 416 |||||||| ||||||||||| ||| ||||||||||||||||| ||||||| || |||||| Sbjct 347 ACAATGGAGGAGGTTTACACTGACGAAGCTGTATCAGACAAACAAGGAAATTACAAGTTC 406 Query 417 ATTGTCCACGACGATCACAGAGACCAGATGTGCGATGTTTTGCTTGTGAAAAGCTCGGAT 476 |||||||||||||| |||| |||| ||||||||||||||||||| ||||||||| | | | Sbjct 407 ATTGTCCACGACGAGCACAAAGACGAGATGTGCGATGTTTTGCTAGTGAAAAGCGCAG-T 465 Query 477 -AAAACCTGCTCTAAAATCTCCGTTGGACGTGAGAAGTCTCGTGTGATCTTGAACCATTA 535 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 466 CAAGGGATGCTCTAAAATCTCCGTTGGACGTGAGAAGTCTCGTGTGATCTTGAACCATTA 525 Query 536 CAGTGGCATTGCCTCGCAGATCAGACATGCTAACAACATGGGATTTGAGAAAGAAGTGAG 595 |||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||| Sbjct 526 CAGTGGCATTGCCTCGCAGATCAGGCACGCTAACAACATGGGATTCGAGAAAGAAGTGAG 585 Query 596 TGATGTGTTCTGCTCTGCTTTGTTTCAGAAGTATATGGTTGATGAAGATGAGGATGATAT 655 |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| Sbjct 586 CGATGTGTTCTGCTCTGCTCTGTTTCACAAGTATATGGTTGATGAAGATGAGGATGATAT 645 Query 656 TAAAAACCATCTCTAATCTCTCTGTTT--AATCTTATGATCTGCTGTT-TTCTT-CATTA 711 ||||||||||||||||||||||||||| ||||||||| | ||||||| || || ||||| Sbjct 646 TAAAAACCATCTCTAATCTCTCTGTTTTTAATCTTATGGTATGCTGTTCTTTTTTCATTA 705 Query 712 ATGAGTTTCGAGTTATGGAAG-AGATATATTTGTATTTGTTTGATTACTTATTTGT-TGT 769 |||||||||| |||||||||| |||||||||||||||||||||||||||||||||| | | Sbjct 706 ATGAGTTTCGGGTTATGGAAGGAGATATATTTGTATTTGTTTGATTACTTATTTGTCT-T 764 Query 770 CTTTAGA-G-ATGTTGACTCTGGTGATCGGATAACT-ATCTGTTTGTGTAAGCTTCTTAT 826 | || | ||| |||||||||||||| || |||| ||||||||||||||||||||||| Sbjct 765 AGCT-GATGGATGATGACTCTGGTGATCAGA-AACTCATCTGTTTGTGTAAGCTTCTTAT 822 Query 827 ATATTGATGTGTCATTTCCTTGCTTAGGAAGTGTCTTTTATTAAAGCTA 875 ||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 823 ATATTGATGTGTCATTTCCTTGCTTAGGAAGTGTCTTTTATTAAAACTA 871 > Ahg927208 jgi|Araly1|927208|scaffold_202769.1 Length=497 Score = 667 bits (361), Expect = 0.0 Identities = 431/465 (93%), Gaps = 4/465 (1%) Strand=Plus/Plus Query 229 TTGGAAAGAATACAATGGTGGTTCAAGGTAGCACCTACTGTGACATTTGCAAATTCGGCT 288 ||||||||||||||||||||||||||||| | || ||||||||| ||||||||||||||| Sbjct 34 TTGGAAAGAATACAATGGTGGTTCAAGGTCGTACTTACTGTGACCTTTGCAAATTCGGCT 93 Query 289 TCGAGACTCCTGAATCCTCCTACTTCATCCCCGGTGCAACGGTGAAGCTATCATGCAAAG 348 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 94 TCGAGACTCCTGAATCCTCCTACTTCATCCCCGGTGCAACGGTGAAGCTTTCATGCAGAG 153 Query 349 ACAGGAAGACAATGGAAGAGGTTTACACAGACAAAGCTGTATCAGACAAAGAAGGAAAGT 408 |||||||||||||||| ||||||||||| ||| ||||||||||||||||| ||||||| | Sbjct 154 ACAGGAAGACAATGGAGGAGGTTTACACTGACGAAGCTGTATCAGACAAACAAGGAAATT 213 Query 409 ATAAGTTCATTGTCCACGACGATCACAGAGACCAGATGTGCGATGTTTTGCTTGTGAAAA 468 | |||||||||||||||||||| |||| |||| ||||||||||||||||||| ||||||| Sbjct 214 ACAAGTTCATTGTCCACGACGAGCACAAAGACGAGATGTGCGATGTTTTGCTAGTGAAAA 273 Query 469 GCTCGGAT-AAAACCTGCTCTAAAATCTCCGTTGGACGTGAGAAGTCTCGTGTGATCTTG 527 || | | | || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 274 GCGCAG-TCAAGGGATGCTCTAAAATCTCCGTTGGACGTGAGAAGTCTCGTGTGATCTTG 332 Query 528 AACCATTACAGTGGCATTGCCTCGCAGATCAGACATGCTAACAACATGGGATTTGAGAAA 587 |||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||| Sbjct 333 AACCATTACAGTGGCATTGCCTCGCAGATCAGGCACGCTAACAACATGGGATTCGAGAAA 392 Query 588 GAAGTGAGTGATGTGTTCTGCTCTGCTTTGTTTCAGAAGTATATGGTTGATGAAGATGAG 647 |||||||| |||||||||||||||||| ||| ||| |||||||||||||||||||||||| Sbjct 393 GAAGTGAGCGATGTGTTCTGCTCTGCTCTGTATCACAAGTATATGGTTGATGAAGATGAG 452 Query 648 GATGATATTAAAAACCATCTCTAATCTCTCTGTTT--AATCTTAT 690 ||||||||||||| ||||||||||||||||||||| |||||||| Sbjct 453 GATGATATTAAAAGCCATCTCTAATCTCTCTGTTTTTAATCTTAT 497 > Ahg909428 jgi|Araly1|909428|Al_scaffold_0002_2509 Length=195 Score = 289 bits (156), Expect = 3e-77 Identities = 179/190 (94%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 483 TGCTCTAAAATCTCCGTTGGACGTGAGAAGTCTCGTGTGATCTTGAACCATTACAGTGGC 542 ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 7 TGCTCTAAAATCTCCGTTGGACGCGAGAAGTCTCGCGTGATCTTGAACCATTACAGTGGC 66 Query 543 ATTGCCTCGCAGATCA-GACATGCTAACAACATGGGATTTGAGAAAGAAGTGAGTGATGT 601 |||||||||||||||| | || ||||||||||||||||| |||||||||||||| ||||| Sbjct 67 ATTGCCTCGCAGATCAAG-CACGCTAACAACATGGGATTCGAGAAAGAAGTGAGCGATGT 125 Query 602 GTTCTGCTCTGCTTTGTTTCAGAAGTATATGGTTGATGAAGATGAGGATGATATTAAAAA 661 ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||| Sbjct 126 GTTCTGCTCTGCTCTGTTTCACAAGTATATGGTTGATGAAGATGAGGATGATATTCAAAG 185 Query 662 CCATCTCTAA 671 |||||||||| Sbjct 186 CCATCTCTAA 195 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34806223221 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5