BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78070.1
Length=2077
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316716 jgi|Araly1|316716|fgenesh1_pm.C_scaffold_2001749 2100 0.0
Ahg314047 jgi|Araly1|314047|fgenesh1_pm.C_scaffold_1002827 448 1e-124
> Ahg316716 jgi|Araly1|316716|fgenesh1_pm.C_scaffold_2001749
Length=1350
Score = 2100 bits (1137), Expect = 0.0
Identities = 1280/1351 (95%), Gaps = 2/1351 (0%)
Strand=Plus/Plus
Query 103 ATGGATATTTTCGACAACTCTGATCTTGAATACCTTGTTGATGAATTTCACGCTGATTTC 162
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 1 ATGGATATATTCGACAACTCTGATCTTGAATACCTTGTGGATGAATTTCACGCTGGTTTC 60
Query 163 GATGATGATGAGCCCTTTGGAGAGGTTGATGTCACCAGTGAGTCTGATTCCGATTTCATG 222
||||||||||| |||||||||||||| ||| |||||||||| |||||||| |||||||||
Sbjct 61 GATGATGATGAACCCTTTGGAGAGGTCGATATCACCAGTGATTCTGATTCTGATTTCATG 120
Query 223 GACTCCGATTTTGATTTCGAGCTGAGTGAGAGTAAGACGAACAATGAAACATCAGCGTTA 282
||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 121 GACTCCGATTTCGATTTCGAGCTGAGTCAGAGTAAGACGAACAATGATACATCAGCGTTA 180
Query 283 GAAGCTAGGAATGGAAAAGATATTCAAGGGATTCCATGGGAGAGCTTGAATTACACGAGG 342
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 181 GAAGCTAGGAATGGAAAAGATATTCAAGGGATTCCTTGGGAGAGCATGAATTACACGAGG 240
Query 343 GATAGATACCGTGAGAATAGATTGCTGCACTATAAAAACTTTGAGAGTCTGTTTCGATCC 402
||||||||||||||||| |||||||| ||||||||||||||||||||||| ||| |||||
Sbjct 241 GATAGATACCGTGAGAACAGATTGCTACACTATAAAAACTTTGAGAGTCTCTTTAGATCC 300
Query 403 AGAGAAGAGCTTGATAAGGAATGCTTGCAAGTAGAGAAAGGAAAGAACTTTTATGACTTT 462
|||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct 301 AGAGAAGAGCTTGATAAGGATTGCTTGCAAGTTGAGAAAGGAAAAAACTTTTATGACTTT 360
Query 463 CAGTTCAATACAAGGCTTGTCAAGTCCACAATAGCGCATTTTCAGCTGAGGAACTTGGTA 522
|||||||| || |||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 361 CAGTTCAACACGAGGCTTGTCAAGTCCACAATTGCACATTTTCAGCTGAGGAACTTGGTA 420
Query 523 TGGGCAACATCAAAGCACGATGTGTATTTCATGAACAACTACTCTCTCATGCACTGGTCA 582
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 421 TGGGCAACATCAAAGCACGATGTGTATTTCATGAACAACTACTCTCTCATGCATTGGTCA 480
Query 583 TCTTTGTTGCAAAGGGGCAAAGAAGTACTTAATGTGGCAAAGCCCATTGTTCCTTCAATG 642
|||||| |||||||||||||||||||||| |||||||| ||||||||||||||| |||||
Sbjct 481 TCTTTGCTGCAAAGGGGCAAAGAAGTACTCAATGTGGCGAAGCCCATTGTTCCTACAATG 540
Query 643 AAGCAGCATGGATCGTTGTCACAGTCTGTATCAAGAGTCCAGATAAGCACCATGGCAGTT 702
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 541 AAGCAGCATGGATCGTTGTCGCAGTCTGTATCAAGAGTCCAGATAAGCACCATGGCAGTT 600
Query 703 AAAGACGATTTGATAGTTGCGGGAGGGTTCCAAGGAGAGCTTATCTGTAAGAAAATCAAC 762
||||||||||| ||||||||||||||||||||||| || |||||||| |||| |||||||
Sbjct 601 AAAGACGATTTAATAGTTGCGGGAGGGTTCCAAGGGGAACTTATCTGCAAGAGAATCAAC 660
Query 763 GAACCTGAGGTTGCTTTCTGCACTAAACTAACATCAGCTGATAACGACATCACCAATTCG 822
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 661 GAACCTGAGGTTGCTTTCTGCACAAAACTAACATCAGCTGAAAACGACATCACCAATTCG 720
Query 823 GTTGACATCTACAACGCACCTAGTGGCTCGTTAAGGGTTATGACCGCGAACAATGACTGT 882
|||||||| |||||||||||||||||||||||||| || ||| |||||||||||||||||
Sbjct 721 GTTGACATATACAACGCACCTAGTGGCTCGTTAAGAGTCATGGCCGCGAACAATGACTGT 780
Query 883 ACTGTCCGGCTATTTGATGCCACAAACTTTGCCTTGCTCAACAGATTTG-CCTTTCACTG 941
||||||||||||||||||||||||||||||||||| |||||||| ||| ||||| | ||
Sbjct 781 ACTGTCCGGCTATTTGATGCCACAAACTTTGCCTTCCTCAACAG-TTTCACCTTTGATTG 839
Query 942 GTCTGTAAATAACATCTCCACCAGTCCAGATGGTAAGCTAGTGGCTGTTCTAGGAGACAG 1001
||||||||||||||| |||||||||||||| || ||| |||||||||||||||| |||||
Sbjct 840 GTCTGTAAATAACATTTCCACCAGTCCAGACGGCAAGTTAGTGGCTGTTCTAGGGGACAG 899
Query 1002 TCCTGAGTGCTTACTAGCAGATACCGGATCTGGAAAAGTGATCCACGGACTCGAAGGCCA 1061
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TCCAGAGTGCTTACTAGCAGATACCGGATCTGGAAAAGTGATCCACGGACTCGAAGGCCA 959
Query 1062 TCTCGACTACTCGTTTTCATCAGCATGGCACCCAAACGGTCAAATCTTAGCCACGGGTAA 1121
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 960 TCTAGACTACTCGTTTTCATCAGCATGGCACCCAAACGGTCAAATCCTAGCCACGGGCAA 1019
Query 1122 CCAAGACACAACCTGTAGACTATGGGACGTAAGGAACCTGTCTCAATCACTCAAAGTCTT 1181
||||||||||||||||| ||||||||| ||||||||||||||||||| |||||| | ||
Sbjct 1020 TCAAGACACAACCTGTAGGCTATGGGACATAAGGAACCTGTCTCAATCCCTCAAATTGTT 1079
Query 1182 GAAAGGAAACATGGGAGCTATCAGAGCCTTGAGGTTCACGTCTGATGGACGGTTCTTAGC 1241
|||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||
Sbjct 1080 GAAAGGAAACATGGGAGCCATCCGAGCCTTGAGGTTCACGTCTGATGGTCGGTTCTTAGC 1139
Query 1242 CATGGCTGAGCCAGCGGACTTTGTACACTTGTTTGACACGGAAGCTGGTTACAGTCAGTG 1301
||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 1140 CATGGCTGAGCCAGCAGACTTTGTACACTTGTTTGATACGGAAGCTGGTTACACTCAGTG 1199
Query 1302 TCAAGAGATTGATCTGTTTGGAGAAATAGCGGGAATCTCGTTTAGCCCCGACACGGAGGC 1361
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1200 TCAAGAGATTGATCTGTTTGGAGAAATAGCGGGAATCTCGTTTAGCCCTGACACGGAGGC 1259
Query 1362 ACTGTTCGTGGGAGTAGCTGATCGTACGTACGGCAGCTTGTTGGAGTTTAACAGGAAGCG 1421
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1260 ACTGTTCGTGGGAGTAGCTGATCGTACTTACGGTAGCTTGTTGGAGTTTAACAGGAAGCG 1319
Query 1422 AAACCACTCGTATGTTGATTCCATATTCTGA 1452
|||||||||||||||||||||||||||||||
Sbjct 1320 AAACCACTCGTATGTTGATTCCATATTCTGA 1350
> Ahg314047 jgi|Araly1|314047|fgenesh1_pm.C_scaffold_1002827
Length=1200
Score = 448 bits (242), Expect = 1e-124
Identities = 894/1198 (75%), Gaps = 88/1198 (7%)
Strand=Plus/Plus
Query 267 TGAAACATCAGCGT-TAGAAGCTAGGAATGGAAAAGATATTCAAGGGATTCCA-TGGG-A 323
||| |||||||| | ||| || || ||||| ||||| |||||||||||| || |||| |
Sbjct 9 TGATACATCAGC-TCAAGAGGCAAGAAATGGTAAAGACATTCAAGGGATT-CAGTGGGAA 66
Query 324 GAGCTTGAATTACACGAGGGATAGA-TACCGTGAGAATAGATTGCTGCACTATAAAAACT 382
| | || || || || || || || | ||||||| ||| ||| || ||| | ||||
Sbjct 67 G-GGTTTAAGTATACTAGAGA-CGAGTTTCGTGAGACTAGGTTGAAACAATATGAGAACT 124
Query 383 TTGAGAGTCTGTT-TCG---A--TC-CAGAGAAGAGCTTGATAAGG-A-ATGCTTGCAAG 433
||| | | | || || | || | | ||| |||| ||||||| | || | |||||
Sbjct 125 TTGTCAATATCTTAACGCCTAGCTCTC-GGGAAAAGCTCGATAAGGAACAT-C-GGCAAG 181
Query 434 TAGAGAAAGGAAAGAACTTTTATGACTTTCAGTTCAATACAAGGCTTGTCA-AGTCCACA 492
| |||||||||||||||||||||||||| |||||||||||||||||||||| | |||||
Sbjct 182 TTGAGAAAGGAAAGAACTTTTATGACTTCCAGTTCAATACAAGGCTTGTCACA-TCCACT 240
Query 493 ATAGCGCATTTTCAGCTGAGGAACTTGGTATGGGCAACATCAAAGCACGATGTGTATTTC 552
|| | |||||||||||| |||| ||||||||||| ||||||||||| ||||| ||| |
Sbjct 241 ATTGTGCATTTTCAGCTTCGGAATTTGGTATGGGCGACATCAAAGCATGATGTATATCTA 300
Query 553 ATG-AACAACTACTCTCTCATGCACTGGTCATCT-TTGTTGCAAAG-GGGCAAAGAAGTA 609
||| || || || || |||||| ||||||||||| || | || || ||| |||||||||
Sbjct 301 ATGCAA-AATTATTCACTCATGTACTGGTCATCTCTT-CTACAGAGAGGG-AAAGAAGTA 357
Query 610 CTTAATGTGGCAAAGCCCATTGTT-CCTTCAAT--GAAGC-AGCATGGATCGTTGTCACA 665
| ||||| || || || ||| || || | ||| | | | ||||| ||| || |
Sbjct 358 ATGAATGTCGC-CAGATCA--GTTACCCCCACTCAGAAACTA-CCTGGATTGTTTTCTGA 413
Query 666 GTCTGTATCAAGAGT-CCAGATAAGCACCATGGCAGTTAAAGACGATTTGATAGTTG-CG 723
| | | || || || | || | |||| ||||||||| ||||| || |||| ||
Sbjct 414 GCCACTCTCCAGGGTGCAAG-TTAGCAGCATGGCAGTCAAAGAAAATCTGAT-CCTGTTA 471
Query 724 GGAGGGTTCCAA-GGAGAGCTTATCTGTAAGAAAATCAACGAACCTGAGGTTGCTTTCTG 782
|||||||| ||| || |||||| |||| ||| | ||| | |||| ||||||||| ||
Sbjct 472 GGAGGGTT-CAACGGGGAGCTTCTCTGCAAGTGTGTAAACCAGCCTGGGGTTGCTTTTTG 530
Query 783 CACTAA-ACTAACATCAGCTGATAACGACATCACCAATTCGGTTGACATCTA-C-AACGC 839
||| || | | || ||| ||||| | |||||| || | ||||| || || | || ||
Sbjct 531 CAC-AAGATTGTCAACAGAAGATAATGCCATCACAAACACAGTTGATATATACCGAA-GC 588
Query 840 ACCTAGTGGCT-CGTTAAGGGTTATGACCGCGAACAATGACTGTACTGTCCGGCTATTTG 898
|| ||||||| | || ||| |||| ||||| || || ||||||| | ||| |||| |
Sbjct 589 -CCAAGTGGCTCCCTT-AGGCTTATAACCGCAAATAACGACTGTAAAATTCGGGTATTCG 646
Query 899 ATGCCACA-AACTTTGC-CTTGCTCAACAG-ATTTGCCTTTC-ACTGGTCTGTAAATAAC 954
||| | || | |||| | | || || | | ||||| ||||| | |||||||| |||||
Sbjct 647 ATG-CTCAGAGCTTTACACGTG-TC-AGTGAATTTG-CTTTCGATTGGTCTGTCAATAAT 702
Query 955 ATCTCCA-CCAGTCCAGATGGTAAGCTAGTGGCTGTTCTAGGAGACAGTCCTGAGTGCTT 1013
| || || || |||||||| |||||| | ||||| || || || ||| | || |||||
Sbjct 703 ACCT-CAGTTAGCCCAGATGGAAAGCTACTCGCTGTACTCGGGGATAGTACAGAATGCTT 761
Query 1014 -ACTAGCAGATACCGGA-TCTGGAAAAGTGA--TCCACGGACTCGAAGGCCATC-TCGAC 1068
| | | ||| || | ||||||||||| | || || ||| ||||||| | |||
Sbjct 762 GA-TCTCTGATTCC-CATTCTGGAAAAGTTATTTCAAC--CCTCAAAGGCCA-CAAAGAC 816
Query 1069 TACTCGTTTTCATCAGCATGGCACCCAAACGGTCAAATCTTAGCCACGGGTAACCAAGAC 1128
||||||||| |||| || |||||||| || |||| ||||||||| || || |||||||||
Sbjct 817 TACTCGTTTGCATCTGCTTGGCACCCGAATGGTCTAATCTTAGCAACTGGAAACCAAGAC 876
Query 1129 ACAACCTGTAGACTATGGGACGTAAGGAACCTGTCTCAATCACTC-AAAGTCTTGAAAGG 1187
|| || || | || |||||| | |||||| || ||||| || | || |||||||
Sbjct 877 ACGACATGCCGTCTCTGGGACATTCGGAACCCATCAGAATCATTCGCCA-TCCTGAAAGG 935
Query 1188 AAACATGGGAGCTATCAGA-GCCTTGAGGTTCACGTCTGATGGACGG-TTCTTAGCCATG 1245
|||||||||||| |||||| | | ||| |||||| | || |||||| ||||| ||||||
Sbjct 936 AAACATGGGAGCCATCAGAGGAC-TGAAGTTCACACCAGAAGGACGGTTTCTT-GCCATG 993
Query 1246 GCTGAGCCAGCGGACTTTGTACACTTGTTTGACACGGAAG--CTGGTTACAGT-CAGTGT 1302
|||||||| || |||||||| ||| | || ||||| | || | |||| | | ||||
Sbjct 994 GCTGAGCCTGCAGACTTTGTTCACATCTTCGACAC-GCAGTCCGGGTTTC--TACAGTCC 1050
Query 1303 CAAGAGATTGATCTGTTTGGAGAAATAGC-GGGAATCTCGTTTAGCCCCGACACGGAGGC 1361
||||||||||||||||||||||||||||| |||| |||| |||||||||||||| |||||
Sbjct 1051 CAAGAGATTGATCTGTTTGGAGAAATAGCTGGGA-TCTCATTTAGCCCCGACACAGAGGC 1109
Query 1362 ACTGT-TCGT-GGGAGTAGCTGATCGTACGTACGGCAGCTTGTTGGAGTTTAACAGGA 1417
||| | | || |||| | || || || || || || |||||| |||||| ||| ||||
Sbjct 1110 ACTATAT-GTTGGGA-TCGCAGACCGCACCTATGGAAGCTTGATGGAGTATAAGAGGA 1165
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78123092495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5