BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78100.1
Length=1318
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476977 jgi|Araly1|476977|fgenesh2_kg.2__2107__AT1G78100.1 1657 0.0
Ahg472458 jgi|Araly1|472458|fgenesh2_kg.1__2412__AT1G22220.1 261 9e-69
> Ahg476977 jgi|Araly1|476977|fgenesh2_kg.2__2107__AT1G78100.1
Length=1273
Score = 1657 bits (897), Expect = 0.0
Identities = 1039/1107 (94%), Gaps = 12/1107 (1%)
Strand=Plus/Plus
Query 36 AACACAAAGTGAGACAGAACTCTCTAATTAGTCCCGAAGGTTTCAAAAGGGTATTTTGGT 95
||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 23 AACACAAAGTGAG--AGAACTCTCTAAACAGTCCCGAAGGTTTCAAAAGGGTATTTTAGT 80
Query 96 -AAA--ATCG--AAAGAGAATCATGGACGCTTTTGATGCGATTCCAGATCCTGTGGTCAT 150
||| || | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 AAAACCATAGAAAAAGAGAATCATGGACGCTTTTGATGCGATTCCAGATCCTGTGGTCAT 140
Query 151 CGACATTTTGAACAGAGTCGGTGACGTCAAAACGTTAATACGATGTCGTTCCGTTTCTAA 210
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 141 CGACATTTTGAACAAAGTCGGTGACGTCAAAACGTTAATACGATGCCGTTCCGTTTCCAA 200
Query 211 ACGATTCAACTCGTTAGCCACTCAGTCTGAGTCGCTCCTTCTCCAACTCGATCAGATCCT 270
||||||||||||||||||||||||||| || || |||||||| |||||||||||||||||
Sbjct 201 ACGATTCAACTCGTTAGCCACTCAGTCCGACTCACTCCTTCTTCAACTCGATCAGATCCT 260
Query 271 CGGAGCCACCGAATCTGACTCCGAGATCGATTCTCCTATCGCTAGCTTCTTCCGATCTCT 330
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 261 CGGAGCCACCGAATCTGACTCCGAGATCGATTCTCCGATCGCTAGCTTCTTCCGATCTCT 320
Query 331 CTTCAAATCCATTCACGGTCTCCTTCCTCCTATCTTCTCCAAACCAGCTAACTCTGACGA 390
|||||||||||| |||||||||| || | || |||||||||||||||||| |||||||
Sbjct 321 GTTCAAATCCATTTACGGTCTCCT-CC-C-TAGCTTCTCCAAACCAGCTAAAACTGACGA 377
Query 391 AATCCTAACCCGATCTCCGAAAACTCCGGCTCAGATTCTCTCCGGATTTGAACGGATCCG 450
|||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 378 AATCTTAACCCGATCCCCGAAAACTCCGGCTCAGATTCTCGCCGGATTTGAACGGATCCG 437
Query 451 GAATCTGGAGGTGGAATTATACGGTGGTGATGTCAAGCTTGAGAAAGGCGCCGCCGTTAA 510
||||||||||||||| |||||||| || ||||||||||| ||||||||||||||||||||
Sbjct 438 GAATCTGGAGGTGGAGTTATACGGCGGAGATGTCAAGCTCGAGAAAGGCGCCGCCGTTAA 497
Query 511 GTGGAAGGCTGAGTTCGGGAAAACTCTCAAGAGCTGCGTCATCGTCGCTTTCCGTTCCGC 570
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 498 GTGGAAGGCTGAGTTCGGAAAAACTCTCAAGAGCTGCGTCATCGTTGCTTTCCGTTCCGC 557
Query 571 GACGGTTAATACTTCAGCAGCTACGGAAGCTGCCGCCGTCGTCGACGGTGTTGTTGAGTC 630
|||||||||||||||||||||||||||| ||||||||||||| ||||||| || |||||
Sbjct 558 GACGGTTAATACTTCAGCAGCTACGGAATCTGCCGCCGTCGTTGACGGTGGCGTGGAGTC 617
Query 631 AGATTCGGAGTTTGTTTGTGGATTGAAGACGCGCGTGGTGTGGACGATCAGCGCGTTGAT 690
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 TGATTCGGAGTTCGTTTGTGGATTGAAGACGCGCGTGGTGTGGACGATCAGCGCGTTGAT 677
Query 691 GGCGGCTTCCACGCGTCATTACTTGATGAGAGATTTGGTGAAAGATCACAAGGAGATGGA 750
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 GGCGGCTTCGACGCGTCATTACTTGATGAGAGATTTGGTGAAAGATCACAAGGAGATGGA 737
Query 751 GAAATTGATTGTGCGTGACAGTGATGGTGAAGGTACGGTGGTGATGGACGCGGCGGGGAT 810
||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 738 GAAATTGATTGTGCGTGACAGAGAAGGAGAAGGTACGGTGGTGATGGACGCGGCGGGGAT 797
Query 811 GAAAGAATACAGAGAGACGGAGGTGCGTGGGGATAATAAAGA-ATCAGAGCGCGTGGGGG 869
||||||||||||||||||||||| |||||| ||| ||||| | || |||||||||||| |
Sbjct 798 GAAAGAATACAGAGAGACGGAGGCGCGTGGAGATGATAAA-ACATTAGAGCGCGTGGGTG 856
Query 870 AACGAACTGTGGTACCTAGCGTGAGGATGAGTATGAGACACGCGCCGTCGCTGATGCTGA 929
|||| || ||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 857 AACGCACGGTGGTTCCTAGCGTCAGGATGAGTATGAGACACGCGCCGTCGCTGATGCTGA 916
Query 930 AGAGCGGGATTTGTCTCGAAGCAGCGACGCTGGTGGTCGTAAGGCCGACTGGTGTGGCTT 989
|||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 917 AGAGCGGGATTTGTCTTGAAGCCGCGACGCTGGTTGTCGTAAGGCCGACTGGTGTGGCTT 976
Query 990 CCGATGATAACGATGTTGAGCTGGTGACGGAGGCGTTCGCCGGAGATGGCGACGATTGTA 1049
|||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||
Sbjct 977 CCGATGATAACGATGTTGAGCTGGTGACTGAGGCGTTTGCCGGAGATGGCGGTGATTGTA 1036
Query 1050 TGTACGGAGAAGCTGTTACGGCGTTGCTTAAGCGTAGGAGAAATGTGTTAGAGATGAATT 1109
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1037 TGTACGGAGAAGCCGTTACGGCGTTGCTCAAGCGTAGGAGAAATGTGTTAGAGATGAATT 1096
Query 1110 CTTTCTAAGGCCTAGTGGGCttttttt 1136
|||||||||||||| ||||||||||||
Sbjct 1097 CTTTCTAAGGCCTAATGGGCTTTTTTT 1123
Score = 244 bits (132), Expect = 9e-64
Identities = 144/150 (96%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 1167 TATATACATACGCATCGTACAAAGCCAACTGTACTATTGGCGTACGACTTTTGGGTCAAA 1226
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1124 TATATACATACGCATCGTACAAAGCCGACCGTACTATTGGCGTACGACTTTTGGGTCAAA 1183
Query 1227 TGACATCAAATCCGAATTATTCCTCTAATATCATATGATTACCACATTAAATGCGTTGCA 1286
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184 TGACATCGAATCCGAATTATTCCTCTAATATCATATGATTACCACATTAAATGCGTTGCA 1243
Query 1287 GCATCTAATATTATACATAGATATGATTCG 1316
||| ||||||| ||| ||||||||||||||
Sbjct 1244 GCAGCTAATATAATATATAGATATGATTCG 1273
> Ahg472458 jgi|Araly1|472458|fgenesh2_kg.1__2412__AT1G22220.1
Length=1041
Score = 261 bits (141), Expect = 9e-69
Identities = 700/954 (73%), Gaps = 102/954 (11%)
Strand=Plus/Plus
Query 113 ATGGACGCTTTT-GAT-GCGATTCCAGATCCTG-TGGTCATCGACATTTTGAACAGAGTC 169
||||||| |||| ||| || |||| || || | | || ||||||| ||||||| |||
Sbjct 70 ATGGACG-TTTTCGATGGC-CTTCCTGA-CCCGATCATCGTCGACATCTTGAACAAAGTT 126
Query 170 GGTGACGTCAAAACGTTAATACGATGTC-GTTC-CGTTTCTAAACGATTCAACT-CGTTA 226
|||||||||||||| ||| | || || | ||| | |||| ||| |||||| || | ||
Sbjct 127 GGTGACGTCAAAACCTTACTTCGTTG-CACTTCTC-TTTCAAAAAGATTCAGCTCCCTT- 183
Query 227 G-CCACTCAGTCTGAGTCGCTCCTTCTCCAACTCGATCAGATCCTCGGAGCCACCGAATC 285
| || ||||||||||||| ||| | |||| |||||| | | || | || | ||| ||
Sbjct 184 GTCC-CTCAGTCTGAGTCACTCATCCTCCGACTCGA-C-CA-CC-CCGA--CTCCG-AT- 234
Query 286 TGACTCCGAGATCGATTCTCCTATCGCTAGCTTCTTCCGAT-CTCTCTTCAAATCCATTC 344
| | || || || | || | | || |||||| || || | ||||| ||| |||
Sbjct 235 T--CACC-AG-TC-A----CC-A--G-TA---TCTTCCAATCCT-TATTCAAGTCCTTTC 277
Query 345 ACGGTCTCCTTCCTCCTATCTTCTCCAAACCAGCT-AACTCTGA-CGAAATC-CTAACCC 401
||||||| ||| || || | ||||| ||||| ||| ||| | || | | || | | |
Sbjct 278 ACGGTCT-CTT-CT-CTCTTTTCTCTAAACCGGCTAAAC-C-GATCCCAGTCAC-GGCTC 331
Query 402 GATCTCCGAAAACTCCGGCT-C-AGATTCTCT-CCGGATTTGAAC-GGATCCGGAATCTG 457
|||||| | |||| || | ||||||||| || | |||| || |||||||| | ||
Sbjct 332 TCTCTCCG-ACTCTCC-CCTCCAAGATTCTCTCCCCG-TTTG-ACAAGATCCGGAGTTTG 387
Query 458 GAGGTGGA-ATTATACGGTGGTGATGTCAAGCTTGAGAAAGGCGCCGCCGTTAAGTGGAA 516
|| || || || |||| || ||||| |||||||| |||||||||||||||||||||||
Sbjct 388 GACGTCGAGCTT-CACGGCGGCGATGTAAAGCTTGAAAAAGGCGCCGCCGTTAAGTGGAA 446
Query 517 GGCTGAGTTCGGGAAAACTCTCAAGAGCTGCGTCATCGTCGCTTTCCGTTCCGCGACGGT 576
|| ||||| |||||||||||||||||||||||| | ||||| ||||||||||| | |
Sbjct 447 AGCGGAGTTTGGGAAAACTCTCAAGAGCTGCGTCGTTGTCGCCTTCCGTTCCGC--C-G- 502
Query 577 TAATACTTCAGCAGCTACGGAAGCTGCCGCCGTCGTCGACGGTGTTGTTGAGTCAGATTC 636
||| | | | | | || ||| || ||| ||| | | ||||||||| |
Sbjct 503 --CTAC--C-G-TG-T-C---TTCTCCCGTCGCCGTAGAC---G--G-TGAGTCAGACGC 545
Query 637 GGAGTTTGTTTGTGGATTGAAGACGCGCGTGGTGTGGACGATCAGCGCGTTGATGGCGGC 696
|||||||| ||| ||||||| || || ||||||||||| |||||||||||||| ||
Sbjct 546 CGAGTTTGTGACCGGACTGAAGACACGTGTCGTGTGGACGATAAGCGCGTTGATGGCTGC 605
Query 697 TTCCACGCGTCATTACTTGATGAGAGATTTGGTGAAAGATCACAAGGAGATGGAGAAATT 756
|| | |||||||||||||||||||| | ||||| || ||| ||||||||||| ||
Sbjct 606 GTCGTCTCGTCATTACTTGATGAGAGAAGTCGTGAAGGAGCACGTGGAGATGGAGAGTTT 665
Query 757 GATTGTGCGTGACAGT-GATGGTGAAGGTACGGTGGTGATGGACGCGGCGGGGATGAAAG 815
||| |||||||| || || || || || ||||||||||||||||||| ||| | ||||
Sbjct 666 GATCATGCGTGAC-GTAGAAGGAGAGGGGACGGTGGTGATGGACGCGGAAGGGCTTAAAG 724
Query 816 AATACA-GAGAGACGGAGGTGCGTGGGGATAATAAAGAATCAGAGCGCGTGG-G--GGA- 870
| | | || | ||||||| ||||| || || | | | |||||||||| | |
Sbjct 725 AGTTTAGGA-ATACGGAGGCGCGTGTGG--AA-GACG-A--GGAGCGCGTGGTGAAAAAT 777
Query 871 A-C-GAACTGTGGTACCTAGCGTGAGGATGAGTATGAGACACGCGCCGTCGCTGATGCTG 928
| | | | ||| || || |||||||||||||||||||||||||||||||| || | ||
Sbjct 778 AGCAGGAGTGTTGTCCCGAGCGTGAGGATGAGTATGAGACACGCGCCGTCTCTTAAACTT 837
Query 929 AAGAGCGGGATTTGTCTCGAAGCAGCGACGCTGGTGGTCGTAAGGCCGACTGGTGTGGCT 988
||||| || |||||| | ||| | || ||||| ||| || | | |||| ||| | |
Sbjct 838 AAGAGTGGTATTTGTTTAGAATCTGCCACGCTTGTGATCATCCGTCCGAGTGGAGAATAT 897
Query 989 TCCGATGA--T---A-ACGATGTTGAGCTGGTGACGGAGGCGTTCGCCGGAGAT 1036
||||||| | | | |||| |||||||| ||||||||| ||||||||||||
Sbjct 898 TCCGATGTCGTCGGAGATGATGCTGAGCTGGCGACGGAGGCTTTCGCCGGAGAT 951
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49292931681
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5