BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78230.1
Length=2295
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476991 jgi|Araly1|476991|fgenesh2_kg.2__2121__AT1G78230.1 2820 0.0
> Ahg476991 jgi|Araly1|476991|fgenesh2_kg.2__2121__AT1G78230.1
Length=2114
Score = 2820 bits (1527), Expect = 0.0
Identities = 1833/1978 (93%), Gaps = 32/1978 (2%)
Strand=Plus/Plus
Query 143 AAAACAAGT-GCGGCTATCTTTAACTCTGGCCGACACATCGGCGGATTCGACTGTGGTCG 201
||||||||| | ||| |||||||||||||||||||||||| |||||||| | |||||||
Sbjct 100 AAAACAAGTAG-GGCAATCTTTAACTCTGGCCGACACATCAACGGATTCGGCGGTGGTCG 158
Query 202 GATCAAGAAGTGCTTCCtttttttCCGGCGTCGTTTCTTCTTTTATATTCATCGATTTGG 261
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 159 GATCAAGAAGTGCTTCCTTTTTTTCCGGCGTCATTTCTTCTTTTAAATTCATCGATTTGG 218
Query 262 TGCTCTCGCAACTTCCAATAGATTACGGCTAATTT-----CTAAAATGAAGATATTACCA 316
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 219 TGTTCTCGCAACTTCCAATAGATTACGGCTAATTTAAAAAATAAAATGAAGATATTACCA 278
Query 317 TGC-TT--TGGATTTATCCGTAGAAAGAAAAATAAGGGGAATTCAAAA------CCTCAG 367
||| || |||||| ||||||||||||||||||||||||||||||||| |||| |
Sbjct 279 TGCTTTGCTGGATTGATCCGTAGAAAGAAAAATAAGGGGAATTCAAAACCTCTGCCTCCG 338
Query 368 AAAACGCAGAGAATACTTCAGATCAGACTTGAAGAGCCAGTGAAGCCTTTGGAGAATGAT 427
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 339 AAAACGCAGAGAATACTTCAGATCAGACTTGAAGAGCCAGTGAAGCCTCTCGAGAATGAT 398
Query 428 GAGCCTAACAACAAGGACAGTCCTATCAAGCACGAGTCATATGACGGCGAAGATGAACGT 487
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 399 GAGCCTAACAACAAGGGCAGTCCTATCAAGCACGAGTCATATGACGGCGAAGATGAACGT 458
Query 488 GACGATAAGGATTCAACGAACCGTGAGTTTTCTAAATTCCACGTTCACGAACGAGCCGTT 547
| ||| ||||| |||||||||||||||||| || ||||||| ||||||||||||||||||
Sbjct 459 GGCGACAAGGACTCAACGAACCGTGAGTTTCCTGAATTCCAAGTTCACGAACGAGCCGTT 518
Query 548 GAATCTGTGAAAAGCAAGGAGGAAGTCACAGATACTTCTGAAAACGGCGATGACAATGAC 607
|||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 519 GAATCTCTGAAAAGCAAGGAGGAAGTCACAGATACTTCTGTAAACGGCGATG---ATGAC 575
Query 608 GAGGATGAAGGAGGTCACGTCAGTGATCCTGGATTAGGCAAAACTACGGCTTGGGTGACG 667
|| || ||||||||||||||||| ||||| |||||||||| | | ||||||||||||||
Sbjct 576 GATGACGAAGGAGGTCACGTCAGCGATCCCGGATTAGGCAGAGCCACGGCTTGGGTGACT 635
Query 668 TCTCCTAAGCTTAAACGATCTTGCTCCACTCTCAGCAAGTTTAATGGCCGGTTCCATGGT 727
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 636 TCTCCTAAGCTTAAACGATCTTGCTCCACTCTCAGCAAGTTCAATGGCCGGTTCCATGGT 695
Query 728 TCTGATCTCCATGACCTGAAAGAGACCGTTCCAGTTAGTAATGAATCAGTGAGGTCTCAT 787
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 696 TCTGATCTCCATGACCTGAGAGAGACCGTTCCAGTTAGTAATGAATCAGTGAGGTCCCAT 755
Query 788 AGAAGTGCAGATAGAGTGATGCTCAAGAAACATTCGTCGATGCAGATACTTCCCTCTGGG 847
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 756 AGAAGTGCAGATAGAGTGATGCTCAAGAAACACTCGTCGATGCAGATACTTCCCTC-GGG 814
Query 848 -AGCCGGCGGCTCTGGTGGAAGTTGTTCCTATGGAGCCATAGGAACCTTCACAAACACCG 906
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 815 TAGCCGGCGGCTCTGGTGGAAACTGTTCCTCTGGAGCCATAGGAACCTTCACAAACACCG 874
Query 907 TGTCTCGCTAAAGTCACAGCCTTTAAACAAGAACCAGCAGTCTGGATACACCTCTGACTT 966
||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 875 TGTTTCCCTAAAGTCACAGCCTTTAAACAAGAACCATCAGTCTGGATACACCTCTGACTT 934
Query 967 TGCTGAGCACAACCAATCCAGCCATGAAGAAGAATCTACAAACTATTGCGCTGATTTCAC 1026
|||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||
Sbjct 935 TGCTGAGCACAACCAATCGAGCCATGAAGAAGAATCTACAAACAATTGCGCCGATTTCAC 994
Query 1027 CAACCAGTCATCAAACTTGTGGCCTCATCATAATCAGTGGGTCGCGTTCTCTGCCGAGTC 1086
|||||| ||||| ||||||||||||| ||||||||||||||| |||||||||||||| ||
Sbjct 995 CAACCAATCATCCAACTTGTGGCCTCGTCATAATCAGTGGGTAGCGTTCTCTGCCGAATC 1054
Query 1087 CTCGTCAATGAAGCGAGTGGACGAGTGGGTAAGAGGACTGGATGTCGAAACCG-TG--GT 1143
|| ||||||||||||||||||||||||||||||||||| ||||| ||||||| | ||
Sbjct 1055 ATCTTCAATGAAGCGAGTGGACGAGTGGGTAAGAGGACTCGATGTTGAAACCGCCGCAGT 1114
Query 1144 -TCCAGTGAACGAGGATAAGGATGTCTTGGCCATCTTCCCAACCTCTCCTAATACTGAGA 1202
||| | ||||||||||| || |||||||||| ||||||||||||||| ||||| ||||
Sbjct 1115 ACCCA-TAAACGAGGATAAAGACGTCTTGGCCAGCTTCCCAACCTCTCCCAATACAGAGA 1173
Query 1203 GATCACCCTTAGGAAATGTGGTTCAGTCCGGAAACGTCTCAGAGGCTATAGTGCACGCAA 1262
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 1174 GATCACCCTTAGGAAATGTGATTCAGTCCGGAAATGTCTCAGAGGCTATAGTGCACGCAA 1233
Query 1263 ATAGCCTTATTCAATCGCTGAGCAAATCATCGAGCGTGGCTCACATCTCGAGCATCGGCT 1322
|||||||||| || || |||||||||| ||||| ||||||||||| ||||| |||||||
Sbjct 1234 ATAGCCTTATCCAGTCTATGAGCAAATCCTCGAGTGTGGCTCACATATCGAGTATCGGCT 1293
Query 1323 TGAAAGCTATCCCGAGCATCTCACATTTTACCAGCCTCAAGTCGATTGATCTATCAAACA 1382
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1294 TGAAAGCTATCCCGAGCATCTCACATTTTACAAGCCTCAAGTCGATTGATCTTTCAAACA 1353
Query 1383 ACTTCATAGTTCAAATTACTCCTGCATCGCTTCCTAAGGGCCTCCACGCGTTGAACCTTT 1442
|||||||||||||||||||||||||||||||||| |||||||| |||||| |||| ||||
Sbjct 1354 ACTTCATAGTTCAAATTACTCCTGCATCGCTTCCAAAGGGCCTGCACGCGCTGAATCTTT 1413
Query 1443 CCAAGAACAAGATCAGTGTTATCGAAGGACTAAGAGATTTGACACGCCTAAGAGTACTCG 1502
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1414 CCAAGAACAAGATCAGTGTTATCGAAGGACTGAGAGATTTGACACGCCTAAGAGTACTCG 1473
Query 1503 ATCTAAGTTACAACCGAATTTCTCGCATTGGACAAGGTTTATCAAACTGTACACTGATCA 1562
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1474 ATCTCAGTTACAACCGAATTTCTCGCATTGGACAAGGTTTATCAAACTGTACACTGATCA 1533
Query 1563 AAGAACTATACCTAGCTGGGAACAAGATCAGCAATGTAGAAGGCTTACACAGATTGCTGA 1622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1534 AAGAACTATACCTAGCTGGGAACAAGATCAGCAATGTAGAAGGCTTACACAGATTGCTGA 1593
Query 1623 AACTTATTGTTCTTGATCTTAGTTTCAACAAGATCGCCACCACCAAAGCAATAGGCCAGC 1682
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1594 AACTTATCGTTCTTGATCTTAGCTTCAACAAGATCGCCACCACCAAAGCAATAGGCCAGC 1653
Query 1683 TTGTAGCCAACTACAACTCTCTCGTTGCTTTGAACATCCTCGGAAACCCGATCCAGAACA 1742
|||| ||||||||||||||||| || |||||||||||||||||||||||||| |||| |
Sbjct 1654 TTGTTGCCAACTACAACTCTCTTGTCGCTTTGAACATCCTCGGAAACCCGATTCAGAGTA 1713
Query 1743 ATGTAGGCGAGGACCAGCTACGCAAGACCGTTTCCAGCCTTCTCCCTAAGCTAGTTTACC 1802
| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1714 ACGTAGGCGAGGACCAGCTACGCAAGACCGTCTCCAGCCTTCTCCCTAAGCTAGTTTATC 1773
Query 1803 ATAACAAGCAGCTCATTAAGCCACAACGAGCCAGGGAAGTTCTCAAAGATAGTGTAGCGA 1862
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1774 TTAACAAGCAGCTCATCAAGCCACAACGAGCCAGGGAAGTACTCAAAGATAGTGTAGCGA 1833
Query 1863 GAGCTGCGTTTGGTGGTGGAGATTCTTTGCACCACAGGCGCAAAAGAACATCCACCAAGA 1922
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1834 GAGCTGCGTTTGGTGGTGGAGATTCTTTGCACCACAGGCGCAAAAGAACATCCACCAAAA 1893
Query 1923 GTGTTGTTGGATCAGCCTCCCCTAGCGTTCACCACCGAGGCCACATTGCAAAAGGACGTG 1982
||||| ||||||||||||||||||||||| |||| ||||| |||||||| ||||||||
Sbjct 1894 AAGTTGTGGGATCAGCCTCCCCTAGCGTTCAACACCAAGGCCGCATTGCAAGAGGACGTG 1953
Query 1983 GATCCAAAAACAGAAGCCAACGTCAACTAAGAAAAACTTCAGCTGCAGGGACGCCATCAC 2042
| ||||||||| ||||||||| ||| |||||||||||||||||||||| | | |||| ||
Sbjct 1954 GTTCCAAAAACCGAAGCCAACATCAGCTAAGAAAAACTTCAGCTGCAGAGTCACCATTAC 2013
Query 2043 ATTGA-ATTGTTCTT-TTTGT-TTGAATCTCATGAATTGGCCAATGCAAATTGCAAAG 2097
| ||| ||| || || ||| | || | | | |||||||||||||||||||||||||||
Sbjct 2014 ACTGACATTTTTTTTCTTT-TCTT-ATTTT-ATGAATTGGCCAATGCAAATTGCAAAG 2068
Score = 95.3 bits (51), Expect = 2e-18
Identities = 62/67 (93%), Gaps = 1/67 (1%)
Strand=Plus/Plus
Query 1 CATGTGGCTCTTTTGCATGTTCTGTCATAAACACGTCCATTTCATTCATcctcttcttct 60
|||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 1 CATGTGGCTCTTTTGCATGTTCTGTCATAAACCCGTCCATTTCATTCTTCCTCATCTTCT 60
Query 61 -tcttct 66
|| |||
Sbjct 61 ATCCTCT 67
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86426765905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5