BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G78290.2 Length=1517 Score E Sequences producing significant alignments: (Bits) Value Ahg909457 jgi|Araly1|909457|Al_scaffold_0002_2538 1635 0.0 Ahg887485 jgi|Araly1|887485|Al_scaffold_0060_2 1607 0.0 > Ahg909457 jgi|Araly1|909457|Al_scaffold_0002_2538 Length=1032 Score = 1635 bits (885), Expect = 0.0 Identities = 984/1033 (95%), Gaps = 2/1033 (0%) Strand=Plus/Plus Query 234 ATGGAGAGGTACGAAATAGTGAAGGATATTGGGTCTGGTAACTTCGGAGTAGCAAAGCTT 293 ||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1 ATGGAGAGGTATGAGATAGTGAAGGATATTGGGTCTGGTAATTTCGGAGTAGCAAAGCTT 60 Query 294 GTTCGTGACAAATTTTCCAAAGAGCTTTTCGCTGTTAAGTTCATCGAGCGAGGCCAAAAG 353 |||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 61 GTTCGTGAGAAATTTTCCAAAGAGCTTTTCGCTATTAAGTTCATCGAGAGAGGCCAAAAG 120 Query 354 ATTGATGAACATGTACAAAGAGAAATCATGAACCATAGGTCGCTGATCCATCCCAATATA 413 |||||||||||||||||||||||||||||||| || ||||| || ||||||||||||||| Sbjct 121 ATTGATGAACATGTACAAAGAGAAATCATGAATCACAGGTCACTCATCCATCCCAATATA 180 Query 414 ATAAGATTCAAGGAGGTTTTATTGACGGCAACACATTTGGCGTTAGTAATGGAATACGCC 473 |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 181 ATAAGATTCAAGGAGGTTTTGTTGACGGCAACACATTTGGCGCTAGTAATGGAATACGCC 240 Query 474 GCCGGAGGAGAACTGTTCGGAAGAATCTGCAGCGCCGGAAGATTCAGTGAAGACGAGGCA 533 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 241 GCCGGAGGAGAACTGTTCGGAAGAATCTGCAGCGCCGGGAGATTCAGTGAAGACGAGGCA 300 Query 534 AGGTTTTTCTTTCAGCAGCTTATATCAGGAGTTAATTACTGTCACAGTCTTCAAATATGC 593 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 AGGTTTTTCTTTCAGCAGCTTATATCAGGAGTTAATTACTGTCACAGTCTTCAAATATGC 360 Query 594 CATAGAGATTTAAAGCTAGAGAACACGTTACTTG-ATGGAAGCGAAGCGCCACGTGTAAA 652 |||||||||||||||||||||||||| ||| ||| ||||||| ||||||||||| ||||| Sbjct 361 CATAGAGATTTAAAGCTAGAGAACACTTTA-TTGGATGGAAGTGAAGCGCCACGCGTAAA 419 Query 653 GATTTGCGACTTTGGATATTCAAAATCAGGAGTTCTTCATTCGCAACCAAAGACAACAGT 712 |||||||||||| ||||||||||||||||||||||| ||||||||||||||||| || || Sbjct 420 GATTTGCGACTTCGGATATTCAAAATCAGGAGTTCTCCATTCGCAACCAAAGACCACTGT 479 Query 713 AGGAACACCTGCTTACATTGCACCTGAAGTGCTCTCCACGAAAGAGTATGACGGCAAAAT 772 ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| Sbjct 480 AGGAACACCTGCTTACATTGCGCCTGAAGTGCTCTCCAAGAAAGAGTATGACGGCAAAAT 539 Query 773 CGCTGATGTTTGGTCTTGTGGAGTCACTTTGTATGTTATGCTTGTTGGTGCTTATCCTTT 832 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 540 CGCTGATGTTTGGTCTTGTGGAGTCACTTTGTATGTCATGCTTGTTGGTGCTTATCCTTT 599 Query 833 TGAAGATCCTTCTGATCCTAAAGATTTTCGGAAGACGATCGGTCGGATTCTCAAAGCTCA 892 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||| Sbjct 600 TGAAGATCCTTCTGATCCTAAAGATTTTCGGAAAACCATCGGTCGGATTCTCAAAGTTCA 659 Query 893 GTATGCTATTCCTGATTATGTTCGAGTTTCGGATGAATGCAGACATCTTCTCTCTCGGAT 952 |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 GTATTCCATTCCTGATTATGTTCGAGTTTCGGATGAATGCAGACATCTTCTCTCTCGGAT 719 Query 953 ATTCGTTGCCAACCCTGAAAAGAGAATAACAATAGAGGAGATAAAGAATCATTCTTGGTT 1012 |||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 720 ATTCATTGCCAACACTGAAAAGAGAATAAGGATAGAGGAGATAAAGAATCATTCTTGGTT 779 Query 1013 TCTCAAGAACTTGCCGGTAGAGATGTATGAAGGATCATTGATGATGAATGGTCCATCGAC 1072 ||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct 780 TCTCAAGAATTTGCCGGTAGAGATGTCTCAAGGATCATTGATGATGAATGGTCCATCGAC 839 Query 1073 TCAGACAGTAGAAGAGATAGTGTGGATCATTGAAGAAGCTCGGAAACCTATCACCGTAGC 1132 ||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||| Sbjct 840 TCAAACAGTGGAAGAGATAGTGTGGATCATTGAGGAAGCTCGGAAACCGATCACAGTAGC 899 Query 1133 TACTGGACTCGCAGGTGCTGGTGGCTCTGGTGGAAGCAGTAATGGTGCCATTGGAAGTAG 1192 |||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 900 TACTGGACTCTCCGGTGCTGGTGTCTCTGGTGGAAGCAGTAATGGTGCCATTGGAAGTAC 959 Query 1193 CAGTATGGATCTCGATGACTTGGACACAGATTTCGACGACATCGATACCGCTGATCTCCT 1252 ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 960 CAGTATGGATCTCGATGACTTGGACACCGATTTTGACGACATCGATACCGCTGATCTCCT 1019 Query 1253 TTCCCCTTTGTGA 1265 ||||||| ||||| Sbjct 1020 TTCCCCTATGTGA 1032 > Ahg887485 jgi|Araly1|887485|Al_scaffold_0060_2 Length=1026 Score = 1607 bits (870), Expect = 0.0 Identities = 980/1033 (95%), Gaps = 8/1033 (1%) Strand=Plus/Plus Query 234 ATGGAGAGGTACGAAATAGTGAAGGATATTGGGTCTGGTAACTTCGGAGTAGCAAAGCTT 293 ||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1 ATGGAGAGGTATGAGATAGTGAAGGATATTGGGTCTGGTAATTTCGGAGTAGCAAAGCTT 60 Query 294 GTTCGTGACAAATTTTCCAAAGAGCTTTTCGCTGTTAAGTTCATCGAGCGAGGCCAAAAG 353 |||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 61 GTTCGTGAGAAATTTTCCAAAGAGCTTTTCGCTATTAAGTTCATCGAGAGAGGCCAAAAG 120 Query 354 ATTGATGAACATGTACAAAGAGAAATCATGAACCATAGGTCGCTGATCCATCCCAATATA 413 |||||||||||||||||||||||||||||||| || || || || ||||||||||||||| Sbjct 121 ATTGATGAACATGTACAAAGAGAAATCATGAATCACAGATCACTCATCCATCCCAATATA 180 Query 414 ATAAGATTCAAGGAGGTTTTATTGACGGCAACACATTTGGCGTTAGTAATGGAATACGCC 473 |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 181 ATAAGATTCAAGGAGGTTTTGTTGACGGCAACACATTTGGCGCTAGTAATGGAATACGCC 240 Query 474 GCCGGAGGAGAACTGTTCGGAAGAATCTGCAGCGCCGGAAGATTCAGTGAAGACGAGGCA 533 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GCCGGAGGAGAACTGTTCGGAAGAATCTGCAGCGCCGGAAGATTCAGTGAAGACGAGGCA 300 Query 534 AGGTTTTTCTTTCAGCAGCTTATATCAGGAGTTAATTACTGTCACAGTCTTCAAATATGC 593 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 AGGTTTTTCTTTCAGCAGCTTATATCAGGAGTTAATTACTGTCACAGTCTTCAAATATGC 360 Query 594 CATAGAGATTTAAAGCTAGAGAACACGTTACTTG-ATGGAAGCGAAGCGCCACGTGTAAA 652 |||||||||||||||||||||||||| || ||| ||||||| |||||||| || ||||| Sbjct 361 CATAGAGATTTAAAGCTAGAGAACACTTTG-TTGGATGGAAGTGAAGCGCCGCGCGTAAA 419 Query 653 GATTTGCGACTTTGGATATTCAAAATCAGGAGTTCTTCATTCGCAACCAAAGACAACAGT 712 ||||| |||||| ||||||||||||||||||||||||||||||||||||||||| || || Sbjct 420 GATTTACGACTTCGGATATTCAAAATCAGGAGTTCTTCATTCGCAACCAAAGACCACTGT 479 Query 713 AGGAACACCTGCTTACATTGCACCTGAAGTGCTCTCCACGAAAGAGTATGACGGCAAAAT 772 ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| Sbjct 480 AGGAACACCTGCTTACATTGCGCCTGAAGTGCTCTCCAAGAAAGAGTATGACGGCAAAAT 539 Query 773 CGCTGATGTTTGGTCTTGTGGAGTCACTTTGTATGTTATGCTTGTTGGTGCTTATCCTTT 832 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 540 CGCTGATGTTTGGTCTTGTGGAGTCACTTTGTATGTCATGCTTGTTGGTGCTTATCCTTT 599 Query 833 TGAAGATCCTTCTGATCCTAAAGATTTTCGGAAGACGATCGGTCGGATTCTCAAAGCTCA 892 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 600 TGAAGATCCTTCTGATCCTAAAGATTTTCGGAAAACCATCGGTCGGATTCTCAAAGCTCA 659 Query 893 GTATGCTATTCCTGATTATGTTCGAGTTTCGGATGAATGCAGACATCTTCTCTCTCGGAT 952 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 GTATTCTATTCCTGATTATGTTCGAGTTTCGGATGAATGCAGACATCTTCTCTCTCGGAT 719 Query 953 ATTCGTTGCCAACCCTGAAAAGAGAATAACAATAGAGGAGATAAAGAATCATTCTTGGTT 1012 |||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||| Sbjct 720 ATTCATTGCCAACCCTGAAAAGAGAGTAAGGATAGAGGAGATAAAGAATCATTCTTGGTT 779 Query 1013 TCTCAAGAACTTGCCGGTAGAGATGTATGAAGGATCATTGATGATGAATGGTCCATCGAC 1072 ||||||||| |||||| | ||| ||||||||||||||||||||||||||||||||| Sbjct 780 TCTCAAGAATTTGCCG--A----TGTCTGAAGGATCATTGATGATGAATGGTCCATCGAC 833 Query 1073 TCAGACAGTAGAAGAGATAGTGTGGATCATTGAAGAAGCTCGGAAACCTATCACCGTAGC 1132 ||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||| Sbjct 834 TCAAACAGTGGAAGAGATAGTGTGGATCATTGAGGAAGCTCGGAAACCGATCACAGTAGC 893 Query 1133 TACTGGACTCGCAGGTGCTGGTGGCTCTGGTGGAAGCAGTAATGGTGCCATTGGAAGTAG 1192 |||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 894 TACTGGACTCTCCGGTGCTGGTGTCTCTGGTGGAAGCAGTAATGGTGCCATTGGAAGTAC 953 Query 1193 CAGTATGGATCTCGATGACTTGGACACAGATTTCGACGACATCGATACCGCTGATCTCCT 1252 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 954 CAGTATGGATCTCGATGACTTGGACACTGATTTCGACGACATCGATACCGCTGATCTCCT 1013 Query 1253 TTCCCCTTTGTGA 1265 ||||||| ||||| Sbjct 1014 TTCCCCTATGTGA 1026 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56792555295 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5