BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78510.1
Length=1600
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927264 jgi|Araly1|927264|scaffold_202825.1 1825 0.0
Ahg494049 jgi|Araly1|494049|fgenesh2_kg.7__3482__AT1G17050.1 955 0.0
Ahg920610 jgi|Araly1|920610|scaffold_101891.1 848 0.0
Ahg911507 jgi|Araly1|911507|Al_scaffold_0001_1761 843 0.0
Ahg948085 jgi|Araly1|948085|scaffold_704314.1 100 3e-20
Ahg336820 jgi|Araly1|336820|fgenesh1_pg.C_scaffold_1003385 95.3 1e-18
> Ahg927264 jgi|Araly1|927264|scaffold_202825.1
Length=1261
Score = 1825 bits (988), Expect = 0.0
Identities = 1171/1260 (93%), Gaps = 9/1260 (1%)
Strand=Plus/Plus
Query 237 ATTCTGGGTTTTGTGAGAATGATGACGTCATGTCGGAATATAGATTTAGGTACGATGATG 296
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 ATTCTGGGTTTTGTGGGAATGATGACGTCATGTCGGAATATAGATTTAGGTACGATGATG 62
Query 297 ATGGCATGTGGTTGTGGCCGTCGTCAGTTTCCTTCATTAGCGAAGAC---TGTTTGTAAG 353
|||||||||||||| ||||||||||| |||||||| ||||| ||||| ||||||||||
Sbjct 63 ATGGCATGTGGTTGCGGCCGTCGTCAATTTCCTTCCTTAGCAAAGACTGTTGTTTGTAAG 122
Query 354 TTTACTAGCAGCAATAGAAGCTATGGCGGTCTGGTGGGGAGTTGCAAAGCGGTGCCAACG 413
||| |||||||||||||||||||||||| ||| | |||||||||||| || |||
Sbjct 123 TTTGGTAGCAGCAATAGAAGCTATGGCGG--TGG-GATTCTTTGCAAAGCGGTACCGACG 179
Query 414 AAATCAAAGGAGATCTCTTTGCTCAATGGTATTGGTCAATCTCAAACAGTGAGTTTTGAT 473
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 180 AAATCAAAGGAGATCTCTTTGCTCAATGGTATTGGTCAAGCTCAAACAGTGACTTTTGAT 239
Query 474 TTGAAACAAGAGTCAAAACAGCCTATTTCGTTGGTGACTCTGTTTGAGCTAGTAGCTGTT 533
|||| || ||||| |||||||||||||||||||| | ||||||||||||||||||| |
Sbjct 240 TTGAGGCATGAGTCTAAACAGCCTATTTCGTTGGTCAATCTGTTTGAGCTAGTAGCTAAT 299
Query 534 GATCTGCAGACTTTGAATGACAATCTTTTATCGATTGTTGGTGCGGAAAATCCGGTTTTG 593
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 300 GATCTGCAGACTTTGAATGACAATCTTTTATCGATTGTTGGTGCAGAAAATCCGGTTCTG 359
Query 594 ATATCTGCGGCTGAGCAGATTTTCGGAGCTGGTGGTAAAAGAATGAGACCGGGTTTGGTA 653
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ATATCTGCCGCTGAGCAAATTTTCGGAGCTGGTGGTAAAAGAATGAGACCGGGTTTGGTA 419
Query 654 TTCCTTGTATCACATGCCACGGCGGAATTAGCAGGCCTAAAGGAACTAACAACAGAACAC 713
|||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||
Sbjct 420 TTCCTTGTATCACATGCCACGGCGGAATTAGCAGGCTTAAAGGAACTTACAACTGAACAC 479
Query 714 CGGCGTTTGGCTGAGATCATCGAGATGATACACACTGCAAGCTTGATACACGACGATGTG 773
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 480 CGGCGTTTGGCTGAGATCATCGAGATGATACACACTGCAAGCTTGATACACGACGACGTG 539
Query 774 TTAGACGAGAGTGACATGCGAAGAGGAAAGGAAACAGTTCATGAGCTTTTCGGCACAAGA 833
|| || |||||||| |||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 540 TTGGATGAGAGTGATATGCGAAGAGGAAAGGAAACTGTTCACGAGCTTTTCGGCACAAGA 599
Query 834 GTAGCGGTGCTAGCTGGAGATTTCATGTTTGCTCAAGCGTCATGGTACTTAGCAAATCTC 893
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GTAGCAGTGTTAGCTGGAGATTTCATGTTTGCTCAAGCGTCATGGTACTTAGCAAATCTC 659
Query 894 GAGAATCTTGAAGTTATTAAGCTCATCAGTCAGGTGATCAAAGACTTTGCAAGCGGAGAG 953
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 660 GAGAATCTTCAAGTTATTAAGCTCATCAGTCAGGTGATCAAGGACTTTGCAAGCGGAGAG 719
Query 954 ATAAAGCAGGCGTCCAGCTTATTTGACTGCGACACCAAGCTCGACGAGTACTTACTCAAA 1013
||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 720 ATAAAGCAGGCATCCAGCTTATTTGACTGCGACACTAAGCTCGACGACTACTTACTCAAG 779
Query 1014 AGTTTCTACAAGACAGCCTCTTTAGTGGCTGCGAGCACCAAAGGAGCTGCCATTTTCAGC 1073
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 780 AGTTTCTACAAGACAGCCTCTTTAGTGGCTGCAAGCACCAAAGGAGCTGCCATTTTCAGC 839
Query 1074 AGAGTTGAGCCTGATGTGACAGAACAAATGTACGAGTTTGGGAAGAATCTCGGTCTCTCT 1133
||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 840 AGAGTTGAGACTGATGTGACAGAGCAAATGTATGAGTTTGGGAAGAATCTCGGTCTCTCT 899
Query 1134 TTCCAGATAGTTGATGATATTTTGGATTTCACTCAGTCGACAGAGCAGCTCGGGAAGCCA 1193
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TTTCAGATAGTCGATGATATTTTGGATTTCACTCAGTCGACAGAGCAGCTCGGGAAGCCA 959
Query 1194 GCAGGGAGTGATTTGGCTAAAGGTAACTTAACAGCACCTGTGATTTTCGCTCTGGAGAGG 1253
||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 960 GCAGGGAGTGACTTGGCTAAAGGTAACTTAACCGCACCCGTGATTTTCGCTCTGGAGAAA 1019
Query 1254 GAGCCAAGGCTAAGAGAGATCATTGAGTCAGAGTTTTGTGAGGCGGGTTCTCTGGAAGAA 1313
||| ||||||| ||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1020 GAGGCAAGGCTGAGAGAGATCATTGAGTCTGAATTTTGTGAGGCGGGTTCTCTGGAAGAA 1079
Query 1314 GCGATTGAAGCGGTGACAAAAGGTGGGGGGATTAAGAGAGCACAAGAATTGGCTAGGGAG 1373
|| |||||| ||||| | |||| ||||| || | ||||||||||||||||||||| |||
Sbjct 1080 GCAATTGAAATGGTGAGAGAAGGCGGGGGAATCAGGAGAGCACAAGAATTGGCTAGAGAG 1139
Query 1374 AAAGCTGATGACGCTATAAAGAATCTACAGTGTCTACCTCGAAGTGGCTT-CAGGTCGGC 1432
|||||||||||||| ||||||||||| ||||| || |||||||||| ||| | |||| ||
Sbjct 1140 AAAGCTGATGACGCGATAAAGAATCTGCAGTGCCTGCCTCGAAGTG-CTTTCCGGTCAGC 1198
Query 1433 TCTAGAAGATATGGTGTTGTATAACCTCGAAAGAATTGATTAGCTTT-CCAAAAGAAGTT 1491
||||||||| |||||| ||||||| |||||||||||||||||||||| |||| |||||||
Sbjct 1199 TCTAGAAGAAATGGTGATGTATAATCTCGAAAGAATTGATTAGCTTTTCCAACAGAAGTT 1258
> Ahg494049 jgi|Araly1|494049|fgenesh2_kg.7__3482__AT1G17050.1
Length=1561
Score = 955 bits (517), Expect = 0.0
Identities = 906/1093 (83%), Gaps = 30/1093 (3%)
Strand=Plus/Plus
Query 401 AGCGGTGCCAACGAAATCAAAGGAG-ATCTCTTTGCTCAATGGTATTGGTCAATCTCAAA 459
|||||| || | ||||| |||||| || ||| || ||||||||||||||||| | |||
Sbjct 376 AGCGGTTCCGGCTAAATCCAAGGAGAAT-TCTCTGGTCAATGGTATTGGTCAAGATAAAA 434
Query 460 CAGTGAGT-TTTGATTTGAAACAAGAGTCA-AAACAGCCTATTTCGTTGGTGACTCTGTT 517
|||||| | | || ||| ||||||||| || |||| || || |||| | ||||||
Sbjct 435 CAGTGA-TGCTCAATCTGAGGCAAGAGTCACCAA-AGCCGATATCTTTGGAAAATCTGTT 492
Query 518 TGAGCTAGTAGCTGTTGATCTGCAGACTTTGAATGACAATCTTTTATCGATTGTTGGTGC 577
|||| ||||||||| |||| |||||| ||||| ||||||||||||||||||||||||||
Sbjct 493 TGAGGTAGTAGCTGATGATTTGCAGAGGTTGAACGACAATCTTTTATCGATTGTTGGTGC 552
Query 578 GGAAAATCCGGTTTTGATATCTGCGGCTGAGCAGATTTTCGGAGCTGGTGGTAAAAGAAT 637
||||||||||||||||||||||| |||||||| || ||| | |||||||| || || ||
Sbjct 553 AGAAAATCCGGTTTTGATATCTGCTGCTGAGCAAATCTTCAGTGCTGGTGGCAAGAGGAT 612
Query 638 GAGACCGGGTTTGGTATTCCTTGTATCAC-ATGCCACGGCGGAATTAGCAGGCCTAAAGG 696
||||||||||||||||||||||||||||| | ||||| ||||||||||| ||| ||||||
Sbjct 613 GAGACCGGGTTTGGTATTCCTTGTATCACGA-GCCACTGCGGAATTAGCTGGCTTAAAGG 671
Query 697 AACTAACAACAGAACACCGGCGTTT-GGCTGAGATCATCGAGATGATACACACTGCAAGC 755
|||| ||| |||||| |||||||| || ||||||||| |||||||| ||||| |||||
Sbjct 672 AACTTACAGTAGAACATCGGCGTTTAGG-TGAGATCATTGAGATGATTCACACCGCAAGT 730
Query 756 TTGATACACGACGATGTGTTAGACGAGAGTGACATGCGAAGAGGAAAGGAAACAGTTCAT 815
||||||||||| |||||||||||||| ||||| |||||||||||||| ||||| |||||
Sbjct 731 TTGATACACGATGATGTGTTAGACGAAAGTGATATGCGAAGAGGAAAAGAAACGGTTCAC 790
Query 816 GAGCTTTTCGGCACAAGAGTAGCGGTGCTAGCTGGAGATTTCATGTTTGCTCAAGCGTCA 875
||||||||||| ||||||||||| || |||||||||||||||||||||||||||| |||
Sbjct 791 GAGCTTTTCGGAACAAGAGTAGCTGTATTAGCTGGAGATTTCATGTTTGCTCAAGCATCA 850
Query 876 TGGTACTTAGCAAATCTCGAGAATCTTGAAGTTATTAAGCTCATCAGTCAGGTGATCAAA 935
|||||||||||||||||||| || || |||| ||||||||||| |||||||| ||||||
Sbjct 851 TGGTACTTAGCAAATCTCGAAAACCTCCAAGTCATTAAGCTCATAAGTCAGGTAATCAAA 910
Query 936 GACTTTGCAAGCGGAGAGATAAAGCAGGCGTCCAGCTTATTTGACTGCGACACCAAGCTC 995
|| ||||||||||| ||||||||||| || || || ||||| || || || | ||||
Sbjct 911 GATTTTGCAAGCGGTGAGATAAAGCAAGCATCAAGTTTATTCGATTGTGATGTCGAGCTT 970
Query 996 GACGAGTACTTACTCAAA-AGTTTCTACAAGACAGCCTCTTTAGTGGCTGCGAGCACCAA 1054
|| || ||||| || ||| |||| |||||||||||| || ||||| ||||| ||||||||
Sbjct 971 GATGACTACTTGCT-AAAGAGTTACTACAAGACAGCTTCATTAGTAGCTGCAAGCACCAA 1029
Query 1055 AGGAGCTGCCATTTTCAGCAGAGTTGA--GCCTGATGT-GACAGAACAAATGTA-CGAGT 1110
||||||||| |||||||| | ||| || || || || | |||| |||||||| | |||
Sbjct 1030 AGGAGCTGCAATTTTCAGTAAAGTCGAAAGC--GAGGTCG-CAGAGCAAATGTATC-AGT 1085
Query 1111 TTGGGAAGAATCTCGGTCTCTCTTTCCA-GATAGTTGATGATATTTTGGATTTCACTCAG 1169
| || |||||||||||| | ||||| || | |||||||||| ||| |||| ||||||||
Sbjct 1086 TCGGAAAGAATCTCGGTTTATCTTTTCAAG-TAGTTGATGACATTCTGGACTTCACTCAA 1144
Query 1170 TCGACAGAGCAGCTCGGGAAGCCAGCAGGGAGTGATTTGGCTAAAGGTAACTTAACAGCA 1229
|| ||||||||| | ||||| || |||| | ||| || || ||||||||| |||||||
Sbjct 1145 TCCACAGAGCAGTTAGGGAAACCTGCAGCTAATGACTTAGCCAAAGGTAACATAACAGCG 1204
Query 1230 CCTGTGATTTTCGCTCTGGAGAGGGAGCCAAGGCTAAGAGAGATCATTGAGTCAGAGTTT 1289
|| ||||| ||||| || |||| ||||| ||||||||||||||||||||||| ||||||
Sbjct 1205 CCAGTGATCTTCGCACTAGAGAATGAGCCGAGGCTAAGAGAGATCATTGAGTCTGAGTTT 1264
Query 1290 TGTGAGGCGGGTTCTCTGGAAGAAGCGATTGAAGCGGTGACAAAAGGTGGGGGGATTAAG 1349
|||||| | || || || ||||||||||||||| || | ||| | || ||||| |||
Sbjct 1265 TGTGAGCCTGGATCGCTTGAAGAAGCGATTGAAATAGTTAGAAATCGCGGTGGGATCAAG 1324
Query 1350 AGAGCACAAGAATTGGCTAGGGAGAAAGCTGA--T-GACGCTATAAAGAATCT-ACAGTG 1405
| ||| ||||||||||||| |||||||| ||| | | || | |||||||||| | | ||
Sbjct 1325 AAAGCTCAAGAATTGGCTAAGGAGAAAGGTGAGCTTG-CG-T-TAAAGAATCTGA-ATTG 1380
Query 1406 TCTACCTCGAAGTGGCTTCAGGTCGGCTCTAGAAGATATGGTGTTGTATAACCTCGAAAG 1465
||| || ||||||| ||||| |||||||| || ||||||||| ||| ||| || |||||
Sbjct 1381 TCTTCCGAGAAGTGGTTTCAGATCGGCTCTTGAGGATATGGTGATGTTTAATCTTGAAAG 1440
Query 1466 AATTGATTAGCTT 1478
||||||||||||
Sbjct 1441 GATTGATTAGCTT 1453
> Ahg920610 jgi|Araly1|920610|scaffold_101891.1
Length=2639
Score = 848 bits (459), Expect = 0.0
Identities = 773/924 (84%), Gaps = 24/924 (3%)
Strand=Plus/Plus
Query 567 ATTGTTGGTGCGGAAAATCCGGTTTTGATATCTGCGGCTGAGCAGATTTTCGGAGCTGGT 626
||||||||||| |||||||||||||||||||||||||||||||| || ||| | ||||||
Sbjct 1711 ATTGTTGGTGCAGAAAATCCGGTTTTGATATCTGCGGCTGAGCAAATCTTCAGTGCTGGT 1770
Query 627 GGTAAAAGAATGAGACCGGGTTTGGTATTCCTTGTATCAC-ATGCCACGGCGGAATTAGC 685
|| || || ||||||||||||||||||||||||||||||| | ||||| |||||||||||
Sbjct 1771 GGCAAGAGGATGAGACCGGGTTTGGTATTCCTTGTATCACGA-GCCACTGCGGAATTAGC 1829
Query 686 AGGCCTAAAGGAACTAACAACAGAACACCGGCGTTT-GGCTGAGATCATCGAGATGATAC 744
||| |||||||||| ||| |||||| |||||||| || ||||||||| |||||||| |
Sbjct 1830 TGGCTTAAAGGAACTTACAGTAGAACATCGGCGTTTAGG-TGAGATCATTGAGATGATTC 1888
Query 745 ACACTGCAAGCTTGATACACGACGATGTGTTAGACGAGAGTGACATGCGAAGAGGAAAGG 804
|||| ||||| ||||||||||| |||||||||||||| ||||| |||||||||||||| |
Sbjct 1889 ACACCGCAAGTTTGATACACGATGATGTGTTAGACGAAAGTGATATGCGAAGAGGAAAAG 1948
Query 805 AAACAGTTCATGAGCTTTTCGGCACAAGAGTAGCGGTGCTAGCTGGAGATTTCATGTTTG 864
|||| ||||| ||||||||||| ||||||||||| || |||||||||||||||||||||
Sbjct 1949 AAACGGTTCACGAGCTTTTCGGAACAAGAGTAGCTGTATTAGCTGGAGATTTCATGTTTG 2008
Query 865 CTCAAGCGTCATGGTACTTAGCAAATCTCGAGAATCTTGAAGTTATTAAGCTCATCAGTC 924
||||||| ||||||||||||||||||||||| || || |||| ||||||||||| ||||
Sbjct 2009 CTCAAGCATCATGGTACTTAGCAAATCTCGAAAACCTCCAAGTCATTAAGCTCATAAGTC 2068
Query 925 AGGTGATCAAAGACTTTGCAAGCGGAGAGATAAAGCAGGCGTCCAGCTTATTTGACTGCG 984
|||| |||||||| ||||||||||| ||||||||||| || || || ||||| || || |
Sbjct 2069 AGGTAATCAAAGATTTTGCAAGCGGTGAGATAAAGCAAGCATCAAGTTTATTCGATTGTG 2128
Query 985 ACACCAAGCTCGACGAGTACTTACTCAAA-AGTTTCTACAAGACAGCCTCTTTAGTGGCT 1043
| | |||| || || ||||| || ||| |||| |||||||||||| || ||||| |||
Sbjct 2129 ATGTCGAGCTTGATGACTACTTGCT-AAAGAGTTACTACAAGACAGCTTCATTAGTAGCT 2187
Query 1044 GCGAGCACCAAAGGAGCTGCCATTTTCAGCAGAGTTGA--GCCTGATGT-GACAGAACAA 1100
|| ||||||||||||||||| |||||||| | ||| || || || || | |||| |||
Sbjct 2188 GCAAGCACCAAAGGAGCTGCAATTTTCAGTAAAGTCGAAAGC--GAGGTCG-CAGAGCAA 2244
Query 1101 ATGTA-CGAGTTTGGGAAGAATCTCGGTCTCTCTTTCCA-GATAGTTGATGATATTTTGG 1158
||||| | |||| || |||||||||||| | ||||| || | |||||||||| ||| |||
Sbjct 2245 ATGTATC-AGTTCGGAAAGAATCTCGGTTTATCTTTTCAAG-TAGTTGATGACATTCTGG 2302
Query 1159 ATTTCACTCAGTCGACAGAGCAGCTCGGGAAGCCAGCAGGGAGTGATTTGGCTAAAGGTA 1218
| |||||||| || ||||||||| | ||||| || |||| | ||| || || |||||||
Sbjct 2303 ACTTCACTCAATCCACAGAGCAGTTAGGGAAACCTGCAGCTAATGACTTAGCCAAAGGTA 2362
Query 1219 ACTTAACAGCACCTGTGATTTTCGCTCTGGAGAGGGAGCCAAGGCTAAGAGAGATCATTG 1278
|| ||||||| || ||||| ||||| || |||| ||||| |||||||||||||||||||
Sbjct 2363 ACATAACAGCGCCAGTGATCTTCGCACTAGAGAATGAGCCGAGGCTAAGAGAGATCATTG 2422
Query 1279 AGTCAGAGTTTTGTGAGGCGGGTTCTCTGGAAGAAGCGATTGAAGCGGTGACAAAAGGTG 1338
|||| |||||||||||| | || || || ||||||||||||||| || | ||| | |
Sbjct 2423 AGTCTGAGTTTTGTGAGCCTGGATCGCTTGAAGAAGCGATTGAAATAGTTAGAAATCGCG 2482
Query 1339 GGGGGATTAAGAGAGCACAAGAATTGGCTAGGGAGAAAGCTGA--T-GACGCTATAAAGA 1395
| ||||| |||| ||| ||||||||||||| |||||||| ||| | | || | ||||||
Sbjct 2483 GTGGGATCAAGAAAGCTCAAGAATTGGCTAAGGAGAAAGGTGAGCTTG-CG-T-TAAAGA 2539
Query 1396 ATCT-ACAGTGTCTACCTCGAAGTGGCTTCAGGTCGGCTCTAGAAGATATGGTGTTGTAT 1454
|||| | | ||||| || ||||||| ||||| |||||||| || ||||||||| ||| |
Sbjct 2540 ATCTGA-ATTGTCTTCCGAGAAGTGGTTTCAGATCGGCTCTTGAGGATATGGTGATGTTT 2598
Query 1455 AACCTCGAAAGAATTGATTAGCTT 1478
|| || ||||| ||||||||||||
Sbjct 2599 AATCTTGAAAGGATTGATTAGCTT 2622
> Ahg911507 jgi|Araly1|911507|Al_scaffold_0001_1761
Length=909
Score = 843 bits (456), Expect = 0.0
Identities = 770/921 (84%), Gaps = 24/921 (3%)
Strand=Plus/Plus
Query 567 ATTGTTGGTGCGGAAAATCCGGTTTTGATATCTGCGGCTGAGCAGATTTTCGGAGCTGGT 626
||||||||||| |||||||||||||||||||||||||||||||| || ||| | ||||||
Sbjct 1 ATTGTTGGTGCAGAAAATCCGGTTTTGATATCTGCGGCTGAGCAAATCTTCAGTGCTGGT 60
Query 627 GGTAAAAGAATGAGACCGGGTTTGGTATTCCTTGTATCAC-ATGCCACGGCGGAATTAGC 685
|| || || ||||||||||||||||||||||||||||||| | ||||| |||||||||||
Sbjct 61 GGCAAGAGGATGAGACCGGGTTTGGTATTCCTTGTATCACGA-GCCACTGCGGAATTAGC 119
Query 686 AGGCCTAAAGGAACTAACAACAGAACACCGGCGTTT-GGCTGAGATCATCGAGATGATAC 744
||| |||||||||| ||| |||||| |||||||| || ||||||||| |||||||| |
Sbjct 120 TGGCTTAAAGGAACTTACAGTAGAACATCGGCGTTTAGG-TGAGATCATTGAGATGATTC 178
Query 745 ACACTGCAAGCTTGATACACGACGATGTGTTAGACGAGAGTGACATGCGAAGAGGAAAGG 804
|||| ||||| ||||||||||| |||||||||||||| ||||| |||||||||||||| |
Sbjct 179 ACACCGCAAGTTTGATACACGATGATGTGTTAGACGAAAGTGATATGCGAAGAGGAAAAG 238
Query 805 AAACAGTTCATGAGCTTTTCGGCACAAGAGTAGCGGTGCTAGCTGGAGATTTCATGTTTG 864
|||| ||||| ||||||||||| ||||||||||| || |||||||||||||||||||||
Sbjct 239 AAACGGTTCACGAGCTTTTCGGAACAAGAGTAGCTGTATTAGCTGGAGATTTCATGTTTG 298
Query 865 CTCAAGCGTCATGGTACTTAGCAAATCTCGAGAATCTTGAAGTTATTAAGCTCATCAGTC 924
||||||| ||||||||||||||||||||||| || || |||| ||||||||||| ||||
Sbjct 299 CTCAAGCATCATGGTACTTAGCAAATCTCGAAAACCTCCAAGTCATTAAGCTCATAAGTC 358
Query 925 AGGTGATCAAAGACTTTGCAAGCGGAGAGATAAAGCAGGCGTCCAGCTTATTTGACTGCG 984
|||| |||||||| ||||||||||| ||||||||||| || || || ||||| || || |
Sbjct 359 AGGTAATCAAAGATTTTGCAAGCGGTGAGATAAAGCAAGCATCAAGTTTATTCGATTGTG 418
Query 985 ACACCAAGCTCGACGAGTACTTACTCAAA-AGTTTCTACAAGACAGCCTCTTTAGTGGCT 1043
| | |||| || || ||||| || ||| |||| |||||||||||| || ||||| |||
Sbjct 419 ATGTCGAGCTTGATGACTACTTGCT-AAAGAGTTACTACAAGACAGCTTCATTAGTAGCT 477
Query 1044 GCGAGCACCAAAGGAGCTGCCATTTTCAGCAGAGTTGA--GCCTGATGT-GACAGAACAA 1100
|| ||||||||||||||||| |||||||| | ||| || || || || | |||| |||
Sbjct 478 GCAAGCACCAAAGGAGCTGCAATTTTCAGTAAAGTCGAAAGC--GAGGTCG-CAGAGCAA 534
Query 1101 ATGTA-CGAGTTTGGGAAGAATCTCGGTCTCTCTTTCCA-GATAGTTGATGATATTTTGG 1158
||||| | |||| || |||||||||||| | ||||| || | |||||||||| ||| |||
Sbjct 535 ATGTATC-AGTTCGGAAAGAATCTCGGTTTATCTTTTCAAG-TAGTTGATGACATTCTGG 592
Query 1159 ATTTCACTCAGTCGACAGAGCAGCTCGGGAAGCCAGCAGGGAGTGATTTGGCTAAAGGTA 1218
| |||||||| || ||||||||| | ||||| || |||| | ||| || || |||||||
Sbjct 593 ACTTCACTCAATCCACAGAGCAGTTAGGGAAACCTGCAGCTAATGACTTAGCCAAAGGTA 652
Query 1219 ACTTAACAGCACCTGTGATTTTCGCTCTGGAGAGGGAGCCAAGGCTAAGAGAGATCATTG 1278
|| ||||||| || ||||| ||||| || |||| ||||| |||||||||||||||||||
Sbjct 653 ACATAACAGCGCCAGTGATCTTCGCACTAGAGAATGAGCCGAGGCTAAGAGAGATCATTG 712
Query 1279 AGTCAGAGTTTTGTGAGGCGGGTTCTCTGGAAGAAGCGATTGAAGCGGTGACAAAAGGTG 1338
|||| |||||||||||| | || || || ||||||||||||||| || | ||| | |
Sbjct 713 AGTCTGAGTTTTGTGAGCCTGGATCGCTTGAAGAAGCGATTGAAATAGTTAGAAATCGCG 772
Query 1339 GGGGGATTAAGAGAGCACAAGAATTGGCTAGGGAGAAAGCTGA--T-GACGCTATAAAGA 1395
| ||||| |||| ||| ||||||||||||| |||||||| ||| | | || | ||||||
Sbjct 773 GTGGGATCAAGAAAGCTCAAGAATTGGCTAAGGAGAAAGGTGAGCTTG-CG-T-TAAAGA 829
Query 1396 ATCT-ACAGTGTCTACCTCGAAGTGGCTTCAGGTCGGCTCTAGAAGATATGGTGTTGTAT 1454
|||| | | ||||| || ||||||| ||||| |||||||| || ||||||||| ||| |
Sbjct 830 ATCTGA-ATTGTCTTCCGAGAAGTGGTTTCAGATCGGCTCTTGAGGATATGGTGATGTTT 888
Query 1455 AACCTCGAAAGAATTGATTAG 1475
|| || ||||| |||||||||
Sbjct 889 AATCTTGAAAGGATTGATTAG 909
> Ahg948085 jgi|Araly1|948085|scaffold_704314.1
Length=329
Score = 100 bits (54), Expect = 3e-20
Identities = 56/57 (98%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 389 GGGGAGTTGCAAAGCGGTGCCAACGAAATCAAAGGAGATCTCTTTGCTCAATGGTAT 445
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 42 GGGGAGTTGCAAAGCGGTGCCCACGAAATCAAAGGAGATCTCTTTGCTCAATGGTAT 98
> Ahg336820 jgi|Araly1|336820|fgenesh1_pg.C_scaffold_1003385
Length=537
Score = 95.3 bits (51), Expect = 1e-18
Identities = 57/60 (95%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 389 GGGGAGTTGCAAAGCGGTGCCAACGAAATCAAAGGAGATCTCTTTGCTCAATGGTATTGG 448
||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||
Sbjct 127 GGGGAGTTGCAAAGCGGTGCCGACGAAATCAAAGGAGATCTCTTTGCTCAATGCTTTTGG 186
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59954045630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5