BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78570.1
Length=2463
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477021 jgi|Araly1|477021|fgenesh2_kg.2__2151__AT1G78570.1 3877 0.0
Ahg474478 jgi|Araly1|474478|fgenesh2_kg.1__4432__AT1G53500.1 985 0.0
Ahg478892 jgi|Araly1|478892|fgenesh2_kg.3__1593__AT3G14790.1 918 0.0
Ahg477022 jgi|Araly1|477022|fgenesh2_kg.2__2152__AT1G78580.1 126 7e-28
> Ahg477021 jgi|Araly1|477021|fgenesh2_kg.2__2151__AT1G78570.1
Length=2423
Score = 3877 bits (2099), Expect = 0.0
Identities = 2309/2409 (96%), Gaps = 20/2409 (1%)
Strand=Plus/Plus
Query 65 TTTTTTGAATTTTGATTCTTCTTCTTCTCCGTTTCTTTCGCTACTTCCTCAGCTTCGTCA 124
||||||||||||||| ||||||||||||| |||||||||| ||||||||||||| |||
Sbjct 25 TTTTTTGAATTTTGA---TTCTTCTTCTCCGCTTCTTTCGCTTCTTCCTCAGCTTCTTCA 81
Query 125 CCGTCGAAAA-TTCTTCACGTTTTCCTCGGAATTTTCCAATTGTCTTCTCC--AATTCTC 181
||||| |||| |||||||| |||| |||||||||||||| || ||||| || |||||||
Sbjct 82 CCGTC-AAAAGTTCTTCACATTTT-CTCGGAATTTTCCAGTTATCTTC-CCAAAATTCTC 138
Query 182 TTGCGATCGTTGAAGATCTGAAAAATTCGAAGCGTTTGATCATGGCTTCGTACACTCCCA 241
|||| | ||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 139 TTGCTAACGTTGAAGATCTGAAAAATTCAAAGCGTTTAATCATGGCTTCGTACACTCCCA 198
Query 242 AGAACATTCTCATCACCGGAGCTGCTGGTTTCATTGCGTCTCATGTCGCCAACAGACTCA 301
||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||
Sbjct 199 AGAACATTCTCATCACCGGAGCTGCTGGTTTCATTGCTTCACATGTAGCCAACAGACTCA 258
Query 302 TACGAAGCTATCCTGATTACAAAATCGTTGTGCTTGACAAGCTTGATTACTGTTCAAATC 361
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 259 TACGAAGCTATCCTGATTACAACATCGTTGTGCTTGACAAACTTGATTACTGTTCAAATC 318
Query 362 TCAAGAATCTCAATCCTTCTAAGCACTCTCCGAACTTCAAGTTTGTCAAAGGTGATATCG 421
|||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||
Sbjct 319 TCAAGAATCTCAATCCTTCTAAACAGTCTCCGAATTTCAAGTTTGTCAAAGGTGATATCG 378
Query 422 CTAGTGCTGACTTGGTGAATCATCTTCTCATCACTGAAGGTATTGACACCATCATGCATT 481
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 379 CTAGTGCTGACTTGGTGAATCATCTTCTCATCACTGAAGGTATCGACACCATCATGCATT 438
Query 482 TCGCTGCTCAGACTCACGTCGACAATTCCTTCGGTAACAGTTTCGAGTTTACTAAGAATA 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 TCGCTGCTCAGACTCACGTCGACAATTCCTTCGGTAACAGTTTCGAGTTTACTAAGAATA 498
Query 542 ATATCTATGGAACTCATGTCCTTCTTGAGGCTTGTAAAGTTACTGGTCAGATTAGGAGGT 601
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 499 ATATCTATGGAACTCATGTGCTTCTTGAGGCTTGTAAAGTTACTGGTCAGATTAGGAGGT 558
Query 602 TTATTCATGTTAGTACTGATGAAGTTTATGGTGAAACTGATGAGGATGCTCTTGTTGGTA 661
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 559 TTATTCATGTCAGTACTGATGAGGTTTATGGTGAAACTGATGAGGATGCTCTTGTTGGTA 618
Query 662 ACCATGAGGCTTCTCAGCTGCTTCCGACGAATCCTTACTCTGCCACGAAAGCTGGTGCTG 721
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 619 ACCATGAGGCTTCTCAGCTACTTCCGACGAATCCTTACTCTGCCACGAAAGCTGGTGCGG 678
Query 722 AGATGCTTGTTATGGCTTATGGTAGATCTTATGGTTTGCCTGTTATTACCACTCGTGGGA 781
||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||
Sbjct 679 AGATGCTTGTTATGGCTTATGGTAGGTCTTATGGGTTGCCTGTTATTACCACACGTGGGA 738
Query 782 ATAACGTCTATGGACCGAATCAGTTTCCTGAGAAGTTGATTCCTAAGTTCATTTTGCTGG 841
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 739 ACAACGTCTATGGACCGAATCAGTTTCCTGAGAAGTTAATTCCTAAGTTCATTTTGCTGG 798
Query 842 CAATGAGAGGGCAGGTTCTTCCCATTCATGGAGATGGATCAAATGTCAGGAGCTACCTCT 901
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 799 CAATGAGAGGGCAAGTTCTTCCCATTCATGGAGATGGGTCAAATGTCAGGAGCTACCTGT 858
Query 902 ACTGTGAAGACGTTGCTGAGGCTTTTGAAGTTGTTCTTCACAAGGGAGAAGTTGGCCATG 961
|||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 859 ACTGTGAAGATGTTGCTGAGGCTTTTGAAGTTATTCTGCACAAGGGAGAAGTTGGCCATG 918
Query 962 TTTACAATATTGGGACGAAGAAGGAGAGGAGAGTGAATGATGTTGCCAAAGACATCTGCA 1021
|||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||
Sbjct 919 TTTACAATATTGGGACGAAGAAGGAGAGGAGAGTCAATGATGTTGCCAGAGATATCTGCA 978
Query 1022 AACTCTTCAACATGGACCCTGAGGCGAACATCAAGTTTGTCGACAACAGACCTTTTAACG 1081
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 979 AACTCTTCAGCATGGACCCTGAGGCGAACATCAAGTTTGTCGAGAACAGACCTTTTAACG 1038
Query 1082 ATCAGAGGTACTTCCTTGACGATCAGAAGCTCAAAAAGTTGGGATGGTCAGAGAGAACCA 1141
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1039 ATCAAAGGTACTTTCTTGACGATCAGAAGCTCAAAAAGTTGGGATGGTCAGAGAGGACCA 1098
Query 1142 CGTGGGAAGAAGGGTTGAAGAAAACTATGGATTGGTACACACAGAACCCGGAGTGGTGGG 1201
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1099 CTTGGGAAGAAGGGTTGAAGAAAACTATGGAATGGTACACACAGAACCCGGAGTGGTGGG 1158
Query 1202 GTGATGTTTCTGGAGCATTGCTTCCTCATCCAAGGATGCTGATGATGCCTGGTGGGCGAC 1261
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 1159 GTGATGTTTCTGGAGCATTGCTTCCTCATCCAAGGATGTTGATGATGCCTGGCGGGCGAC 1218
Query 1262 ACTTTGATGGCTCCGAGGACAATTCGCTGGCAGCTACTTTATCTGAAAAACCAAGTCAAA 1321
||||||||||||| ||||||||||| ||||||||||||||||| || |||||||||||||
Sbjct 1219 ACTTTGATGGCTCGGAGGACAATTCTCTGGCAGCTACTTTATCAGAGAAACCAAGTCAAA 1278
Query 1322 CCCATATGGTTGTTCCAAGCCAAAGGAGCAACGGCACACCTCAAAAGCCTTCGCTGAAGT 1381
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 1279 CCCATATGGTTGTTCCAAGCCCAAGGAGCAACGGCACACCGCAAAAGCCTTCGCTGAAGT 1338
Query 1382 TCCTGATATATGGAAAGACCGGATGGATCGGTGGTCTGCTTGGAAAGATATGTGATAAGC 1441
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1339 TCTTGATATATGGAAAGACCGGATGGATTGGTGGTCTGCTTGGAAAGATATGTGAGAAGC 1398
Query 1442 AAGGAATTGCTTACGAGTATGGGAAAGGTCGGTTGGAGGATCGATCTTCTCTTCTGCAGG 1501
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1399 AAGGAATTGCTTACGAGTATGGGAAAGGTCGGTTGGAGGATCGATCATCTCTTCTGCAGG 1458
Query 1502 ATATTCAGAGTGTTAAGCCAACCCATGTTTTCAATTCCGCTGGTGTGACTGGGAGACCCA 1561
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1459 ATATTCAGAGCGTTAAGCCAACCCATGTTTTCAATTCCGCTGGTGTGACCGGGAGACCCA 1518
Query 1562 ATGTTGACTGGTGTGAGTCTCACAAGACCGAGACTATCCGTGCCAATGTAGCTGGCACAT 1621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1519 ATGTTGACTGGTGTGAGTCTCACAAGACCGAGACTATCCGTGCCAATGTAGCTGGCACAT 1578
Query 1622 TGACTCTAGCTGATGTCTGCAGAGAGCACGGACTCCTAATGATGAATTTCGCTACTGGTT 1681
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1579 TGACTCTAGCTGATGTCTGCAGAGAGCATGGACTCCTGATGATGAATTTCGCTACTGGTT 1638
Query 1682 GTATATTCGAATATGACGACAAGCATCCGGAAGGTTCAGGAATTGGCTTCAAGGAGGAAG 1741
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1639 GTATATTCGAATATGACGACAAGCATCCAGAAGGTTCAGGAATTGGCTTCAAGGAGGAAG 1698
Query 1742 ACACACCCAACTTCACTGGCTCTTTCTACTCGAAAACCAAAGCCATGGTCGAGGAGCTGC 1801
|||| |||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 1699 ACACCCCCAACTTCACTGGCTCTTTTTACTCAAAAACCAAAGCCATGGTTGAGGAGCTGC 1758
Query 1802 TAAAGGAGTATGACAACGTATGCACATTGAGGGTAAGGATGCCGATCTCCTCGGATCTAA 1861
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1759 TAAAAGAGTATGACAACGTATGCACATTGAGGGTAAGGATGCCGATCTCCTCGGATCTAA 1818
Query 1862 ACAACCCGCGCAACTTCATCACCAAGATCTCCAGGTACAACAAAGTAGTGAACATCCCAA 1921
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1819 ACAACCCGCGCAACTTTATCACCAAGATCTCCAGGTACAACAAAGTAGTGAACATCCCAA 1878
Query 1922 ACAGCATGACTGTGTTGGACGAG-TTATTACCAATCTCCATCGAGATGGCGAAAAGAAAC 1980
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1879 ACAGCATGACTGTGTTGGACGAGCTT-TTACCAATCTCCATCGAGATGGCGAAAAGAAAC 1937
Query 1981 TTGAAAGGAATCTGGAACTTCACAAACCCAGGTGTGGTGAGCCACAACGAGATCCTAGAG 2040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1938 TTGAAAGGAATCTGGAACTTCACAAACCCAGGTGTGGTGAGCCACAACGAGATCCTAGAG 1997
Query 2041 ATGTACAGAGACTACATCAACCCTGAATTCAAATGGGCAAACTTCACATTAGAGGAGCAA 2100
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1998 ATGTACAGAGACTACATCAACCCTGAATTCAAATGGGCGAACTTCACATTAGAGGAGCAA 2057
Query 2101 GCTAAAGTCATTGTGGCTCCAAGAAGCAACAACGAGATGGATGCTTCCAAGCTCAAGAAA 2160
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2058 GCTAAAGTCATTGTGGCACCAAGAAGCAACAACGAGATGGATGCTTCCAAGCTCAAGAAA 2117
Query 2161 GAGTTCCCTGAGCTACTCTCTATCAAGGAGTCTCTGATTAAGTATGCATACGGGCCAAAC 2220
||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||
Sbjct 2118 GAGTTCCCTGAGCTACTCTCTATTAAGGAGTCTCTGATTAAGTATGCATTCGAGCCAAAC 2177
Query 2221 AAGAAAACCTGAAGAGA-AT-GATTGTGATTCGTCATTAGAT-AATCACCTTTAATATCA 2277
||||||||||||||||| | ||||||||||||||||||||| ||||| |||||||||||
Sbjct 2178 AAGAAAACCTGAAGAGAGAAAGATTGTGATTCGTCATTAGATTAATCATCTTTAATATCA 2237
Query 2278 GTTTCGTGTATTTTGTTTTGTTATT-GTTTAATTACCCCTTCTTTCATTAGATTTGCTTA 2336
||||||| ||||| ||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 2238 GTTTCGTTTATTT-GTTTTGTTATTTGTTTAATTACCCCTTGTTTCATTAGATTTGCTTA 2296
Query 2337 AGGGGTGTATTTGTAGTTCGAATATTATATGTAATAAGAGCTTGTTCTCA-TTTGTGTCA 2395
|||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||
Sbjct 2297 -GGGGTGTATTTGTAGTTCGAATATTATATGTAATAAGAGCTTGTTCACAATTT-TGTCA 2354
Query 2396 TAAGTTGCTCTACTCTTATTATATTAGAATCAAACCACTAAA-GAGTCTGGTAATGGCTG 2454
|||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||
Sbjct 2355 TAAGTTGCTCTACTCTTATTTTATAAGAATCAAACCACTAAAAGAGTCTGGTAATGGCTG 2414
Query 2455 CTTTTTGTT 2463
|||||||||
Sbjct 2415 CTTTTTGTT 2423
> Ahg474478 jgi|Araly1|474478|fgenesh2_kg.1__4432__AT1G53500.1
Length=2520
Score = 985 bits (533), Expect = 0.0
Identities = 869/1030 (84%), Gaps = 28/1030 (3%)
Strand=Plus/Plus
Query 241 AAGAACATTCTCATCACCGGAGCTGCTGGTTTCATTGCGTCTCATGTCGCCAACAGACTC 300
|||||||||||||| || ||||||||||| |||||||| |||||||| ||||||||| |
Sbjct 330 AAGAACATTCTCATTACTGGAGCTGCTGGATTCATTGCTTCTCATGTTGCCAACAGATTA 389
Query 301 ATACGAAGCTATCCTGATTACAAAATCGTTGTGCTT-GACAAGCTTGATTACTGTTCAAA 359
|| || ||||||||||||||||| ||||||||| || ||||||||||||||||||||| |
Sbjct 390 ATCCGTAGCTATCCTGATTACAAGATCGTTGTG-TTGGACAAGCTTGATTACTGTTCAGA 448
Query 360 TCTCAAGAATCTCAATCCTTCTAAGCAC-TCTCCGAACTTCAAGTTTGTCAAAGGTGATA 418
||| |||||||| ||||||| | | || || |||||||||||||||||||| ||||
Sbjct 449 TCTGAAGAATCTTGATCCTTC-ATTTTCTTCACCAAACTTCAAGTTTGTCAAAGGAGATA 507
Query 419 TCGCTAGTGCTGACT-TGGTGAATC-ATCTTCTCATCACTGAAGGTATTGACACCATCAT 476
||||||||| ||| | | || || | | |||||||| |||||| ||||| || || ||
Sbjct 508 TCGCTAGTGATGA-TCTCGTTAA-CTACCTTCTCATTACTGAAAACATTGATACGATAAT 565
Query 477 GCATTTCGCTGCTCAGACTCACGTCGACAATTCCTTCGGTAACAG-TTTCGAGTTTACTA 535
|||||| |||||||| ||||| || || || || || ||||| || ||| |||||||| |
Sbjct 566 GCATTTTGCTGCTCAAACTCATGTTGATAACTCTTTTGGTAATAGCTTT-GAGTTTACCA 624
Query 536 AGAATAATATCTATGGAACTCATGTCCTTCTT-GAGGCTTGTAAAGTTACTGGTCAGATT 594
|||| ||||||||||| |||||||| ||| || || || ||||||||||| || |||||
Sbjct 625 AGAACAATATCTATGGTACTCATGTTCTT-TTGGAAGCCTGTAAAGTTACAGGACAGATC 683
Query 595 AGGAGGTTTATTCATGTTAGTACTGATGAAGTTTATGGTGAAACTGATGAGGATGCT-CT 653
||||||||||| ||||| ||||| |||||||| ||||| ||||| |||||||||||| |
Sbjct 684 AGGAGGTTTATCCATGTGAGTACCGATGAAGTCTATGGAGAAACCGATGAGGATGCTGC- 742
Query 654 TGTTGGTAACCATGAGGCTTCTCAGCTGCTT-CCGACGAATCCTTACTCTGCCACGAAAG 712
||| || |||||||| ||||| ||||| ||| || |||||||| ||||||||||| || |
Sbjct 743 TGTAGGAAACCATGAAGCTTCACAGCT-CTTACCCACGAATCCCTACTCTGCCACTAAGG 801
Query 713 CTGGTGCTGAGATGCTTGTTATGGCTTATGGTAGATCTTATGGTTTGCCTGTTATTACCA 772
||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||
Sbjct 802 CTGGTGCTGAGATGCTTGTGATGGCTTATGGTAGATCATATGGATTGCCTGTTATTACCA 861
Query 773 CTCGTGGGAATAACGTCTATGGACCGAATCAGTTTCCTGAGAAGTTGATTCCTAAGTTCA 832
|||| ||||| || || ||||| || || |||||||||||||| |||||||||||||||
Sbjct 862 CTCGCGGGAACAATGTTTATGGGCCTAACCAGTTTCCTGAGAAAATGATTCCTAAGTTCA 921
Query 833 TTTTGCTGGCAATGAGAGGGCAGGTTCTTCCCATTCATGGAGATGGATCAAATGTCAGGA 892
| ||| |||| ||||| ||| || |||||||| |||||||||||||| |||||| |||
Sbjct 922 TCTTGTTGGCTATGAGTGGGAAGCCGCTTCCCATCCATGGAGATGGATCTAATGTCCGGA 981
Query 893 GCTACCTCTACTGTGAAGACGTTGCTGAGGCTTTTGAAGTTGTTCTTCACAAGGGAGAAG 952
| ||| | ||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 982 GTTACTTGTACTGTGAAGACGTTGCTGAGGCTTTTGAGGTTGTTCTTCACAAAGGAGAAA 1041
Query 953 TTGGCCATGTTTACAATATTGGGACGAAGA-AGGAGAGGAGAGTGAAT-GATGTTGCCAA 1010
| |||||||| |||||||| || || |||| || | |||||||||| | ||||| || |
Sbjct 1042 TCGGCCATGTCTACAATATCGGTACAAAGAGAGAA-AGGAGAGTGA-TCGATGTGGCTAG 1099
Query 1011 AGACATCTGCAAACTCTTCAACATGGACCCTGAGGCGAA-CAT-CAAGTTTGTCGACAAC 1068
||||||||||||||| ||| | ||||||||| | || ||| || |||||| || |||
Sbjct 1100 AGACATCTGCAAACTTTTCGGGAAAGACCCTGAGTC-AAGCATTCA-GTTTGTTGAGAAC 1157
Query 1069 AGACCTTTTAACGATCAGAGGTACTTCCTTGACGATCAGAAGCTCAA-AAAGTTGGGATG 1127
|||| ||||| ||||| |||||||||||||| ||||||||||| || ||| ||||||||
Sbjct 1158 CGACCCTTTAATGATCAAAGGTACTTCCTTGATGATCAGAAGCTGAAGAAA-TTGGGATG 1216
Query 1128 GTCA-GAGAGAACCACGTGGGAAGAAGGGTTGAAGAAAACTATGGATTGGTACACACAGA 1186
| || ||| |||| || |||||||| || ||||||| || ||||| |||||||| ||||
Sbjct 1217 G-CAAGAGCGAACAACATGGGAAGATGGACTGAAGAAGACAATGGACTGGTACACTCAGA 1275
Query 1187 ACCCGGAGTGGTGGGGTGATGTTTCTGGAGCATTGCTTCCTCATCCAAGGATGCTGATGA 1246
| || |||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct 1276 ATCCTGAGTGGTGGGGTGATGTTTCTGGAGCTTTGCTTCCTCATCCAAGAATGCTTATGA 1335
Query 1247 TGCCTGGTGG 1256
|||| |||||
Sbjct 1336 TGCCCGGTGG 1345
Score = 608 bits (329), Expect = 5e-173
Identities = 710/890 (80%), Gaps = 42/890 (5%)
Strand=Plus/Plus
Query 1365 AAAGCCTTCGCTGAAGTTCCTGATATATGGAAAGACCGGATGGATCGGTGGTCTGCT-TG 1423
|||| ||||| ||||||| |||| ||||| |||||||| ||| | |||||||| || |
Sbjct 1443 AAAG-CTTCGTTGAAGTTTTTGATCTATGGTAAGACCGGTTGGCTTGGTGGTCTTCTAGG 1501
Query 1424 GAAAGATATGTGATAAGCAAGGAATTGCTTACGAGTATGGGAAAGGTCGGTTGGAGGATC 1483
|||| ||||||| |||||||| ||| | || |||||||||||||| || |||||||||
Sbjct 1502 GAAA-CTATGTGAGAAGCAAGGGATTACATATGAGTATGGGAAAGGACGTTTGGAGGATA 1560
Query 1484 GATCTTCTCTTCT-GCAGGATATTCAG-AGTGTTAAGCCAACCCATGT-TTTCAATTCCG 1540
|| |||||||| | || |||||||| | || | || || || ||||| ||| ||| | |
Sbjct 1561 GAGCTTCTCTTGTGGC-GGATATTC-GTAGCATCAAACCTACTCATGTCTTT-AATGCTG 1617
Query 1541 CTGGTGTGACTGGGAGACCCAATGTTGACTGGTGTGAGTCTCACAAGACC-GAGACTATC 1599
||||| | ||||| |||||||| |||||||||||||| |||||||| ||| ||||| ||
Sbjct 1618 CTGGTTTAACTGGCAGACCCAACGTTGACTGGTGTGAATCTCACAA-ACCAGAGACCATT 1676
Query 1600 CGTGCCAATGTAGCTGGCACATTGACTCTAGCTGATGTCTGCAGAGAGCACGGA-CTCCT 1658
|| | ||||| ||||| || ||||||||||||||||| ||||||||| | || ||| |
Sbjct 1677 CGCGTAAATGTCGCTGGTACTTTGACTCTAGCTGATGTTTGCAGAGAG-AATGATCTCTT 1735
Query 1659 AATGATGAA-TTTCGCTACTGGTTGTATATTCGAATATGA--C-GACAAGCATCCGGAAG 1714
|||||||| ||| || || ||||| || || || ||||| | | | | ||||| || |
Sbjct 1736 GATGATGAACTTT-GCCACCGGTTGCATCTTTGAGTATGATGCTG-C-A-CATCCTGAGG 1791
Query 1715 GTTCAGGAATTGGCTTCAAGGAGGAAGACACA-CCCAACTTCACTGGCTCTTTCTACTCG 1773
|||| || || || |||||||| ||||||| | || || ||| ||| ||||||||||||
Sbjct 1792 GTTCGGGTATAGGTTTCAAGGAAGAAGACA-AGCCAAATTTCTTTGGTTCTTTCTACTCG 1850
Query 1774 AAAACCAAAGCCATGGTCGAGGAGCTGCTAAAG-GAGTATGACAACGTATGCACATTGAG 1832
||||||||||||||||| |||||||| || || || |||||||| ||||| || |||||
Sbjct 1851 AAAACCAAAGCCATGGTTGAGGAGCT-CTTGAGAGAATATGACAATGTATGTACCTTGAG 1909
Query 1833 GGTAAGGATGCCGATCTCCTCGGATCTAAACAACCCGCGCAACTTCATCACCAAGATCTC 1892
|| ||||||| |||||||| || ||||||||||| | ||||||||||| ||||||||
Sbjct 1910 AGTCCGGATGCCAATCTCCTCAGACCTAAACAACCCAAGAAACTTCATCACGAAGATCTC 1969
Query 1893 CAGG-TACAACAAAGTAGTGAACATCCCAAACAGCATGACTGTGTTGGACGAG-TTATTA 1950
| | ||||||||||| ||| ||||||| ||||||||||| | |||||||| || |
Sbjct 1970 -ACGCTACAACAAAGTGGTGGACATCCCGAACAGCATGACCATACTGGACGAGCTTCTC- 2027
Query 1951 CCAATCTCCATCGAGATGGCGAAAAGAAACTTGAA-AGGAATCTGGAACTTCACAAACCC 2009
|| |||||||||||||||||||| |||||| | || ||| || ||||||||||| |||||
Sbjct 2028 CCGATCTCCATCGAGATGGCGAAGAGAAACCT-AAGAGGGATATGGAACTTCACCAACCC 2086
Query 2010 AGGTGTGGTGAGCCACAACGAGATCCTAGAGATGTACAGAGACT-ACATCAACCCTGAAT 2068
||| |||||||||||||||||||| || |||||||||| ||| | ||||| | || | |
Sbjct 2087 AGGGGTGGTGAGCCACAACGAGATACTGGAGATGTACA-AGAATTACATCGAGCCAGGTT 2145
Query 2069 TCAAATGGGCAAACTTCACATTAGAGGAGCAAGCTAAAG-TCATTGTGGCTCCAAGAAGC 2127
| |||||| | ||||| ||||| || || ||||| |||| ||||||| ||| | |||||
Sbjct 2146 TTAAATGGTCCAACTTTACATTGGAAGAACAAGC-AAAGGTCATTGTTGCTGCGCGAAGC 2204
Query 2128 AACAACGAGATGGATGCTTCCAAGCTCAAGAAAG-AGTTCCCTGAGCTACT-CTCTATCA 2185
|||||||| ||||||| || || || ||| ||| ||||||| ||| | || | | ||||
Sbjct 2205 AACAACGAAATGGATGGATCTAAACT-AAGCAAGGAGTTCCCAGAGATGCTACCC-ATCA 2262
Query 2186 AGGAGTCTCTGATTAAGTATG-CATACGGGCCAAACAAGAAAACCTGAAG 2234
| ||||| ||||| || || | | | | |||||||||| ||||| |||
Sbjct 2263 AAGAGTCACTGATCAAATACGTCTTT-GAACCAAACAAGAGAACCT-AAG 2310
> Ahg478892 jgi|Araly1|478892|fgenesh2_kg.3__1593__AT3G14790.1
Length=2285
Score = 918 bits (497), Expect = 0.0
Identities = 873/1053 (83%), Gaps = 32/1053 (3%)
Strand=Plus/Plus
Query 238 CCCAAGAACATTCTCATCACCGGAGCTGCTGGTTTCATTGCGTCTCATGTCGCCAACAGA 297
||||||||||| |||||||| || |||||||| ||||| || || ||||| |||||||||
Sbjct 133 CCCAAGAACATCCTCATCACTGGTGCTGCTGGATTCATAGCCTCCCATGTTGCCAACAGA 192
Query 298 CTCA-TACGAAGCTATCCTGATTACAAAATCGTTGTGCTTGACAAGCTTGATTACTGTTC 356
|| | | || ||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 193 CT-AGTTCGTAGCTACCCTGACTACAAAATCGTTGTGCTTGACAAGCTTGATTACTGTTC 251
Query 357 AAATCTCAAGAATCTCAATCCTTCTAAG-CACTCTCCGAACTTCAAGTTTGTCAAAGGTG 415
|| || || || || ||||||||||| | |||||| |||||||||||||| ||||| |
Sbjct 252 TAACCTGAAAAACCTTAATCCTTCTAAATC-CTCTCCTAACTTCAAGTTTGTGAAAGGAG 310
Query 416 ATATCGCTAGTGCTGACTTGGTGAA-TCATCTTCTCATCACTGAAGGTATTGACACCATC 474
||||||| ||||||||| | || || | | |||||||||||||||| || || |||||
Sbjct 311 ATATCGCCAGTGCTGACCTCGTCAACT-ACCTTCTCATCACTGAAGAAATCGATACCATT 369
Query 475 ATGCA-TTTCGCTGCTCAGACTCACGTCGACAATTCCTTCGGTAACAG-TTTCGAGTTTA 532
||||| ||| |||||||| || || || |||||||| |||||||| || ||| |||||||
Sbjct 370 ATGCACTTT-GCTGCTCAAACCCATGTTGACAATTCTTTCGGTAATAGCTTT-GAGTTTA 427
Query 533 CTAAGAATAATATCTATGGAACTCATGTCCTTCTTGAGGCTTGTAAAGTTACTGGTCAGA 592
||||||||||||| ||||| || ||||| ||||| |||||||||||||| ||||| ||||
Sbjct 428 CTAAGAATAATATTTATGGTACCCATGTTCTTCTGGAGGCTTGTAAAGTCACTGGCCAGA 487
Query 593 TTAGGAGGTTTATTCATGTTAGTACTGATGAAGTTTATGGTGAAACTGATGAGGATGCT- 651
| |||||||| || ||||| ||||||||||| || ||||| || |||||||||||||||
Sbjct 488 TCAGGAGGTTCATCCATGTGAGTACTGATGAGGTCTATGGAGAGACTGATGAGGATGCTT 547
Query 652 CTTGTTGGTAACCATGAGGCTTCTCAGCTGCTTCCGACGAATCCTTACTCTGCCACGAAA 711
|| || || || || |||||||||||| |||| ||||| ||||| |||||||| || |||
Sbjct 548 CT-GTGGGAAATCACGAGGCTTCTCAGTTGCTACCGACTAATCCATACTCTGCTACTAAA 606
Query 712 GCTGGTGCTGAGATGCTTGTTATGGCTTATGGTAGATCTTATGGTTTGCCTGTTATTACC 771
||||| |||||||||||||||||||| ||||||||||| ||||| ||||| ||||| ||
Sbjct 607 GCTGGAGCTGAGATGCTTGTTATGGCATATGGTAGATCATATGGGTTGCCGGTTATAACA 666
Query 772 ACTCGTGGGAATAACGTCTATGGACCGAATCAGTTTCCTGAGAAGTTGATTCCTAAGTTC 831
||||| ||||| || || ||||| || || ||||||||||| ||||||||||||||||||
Sbjct 667 ACTCGCGGGAACAATGTTTATGGTCCTAACCAGTTTCCTGAAAAGTTGATTCCTAAGTTC 726
Query 832 ATTTTGCT-GGCAATGAGA-GGGCAGGTTCTTCCCATTC-ATGGAGATGGATCAAATGTC 888
|| | || ||| |||| | ||| || ||| |||| || | ||||||||||| |||||
Sbjct 727 ATCCT-CTTGGCTATGA-ATGGGAAGCCTCT-CCCAATCCACGGAGATGGATCTAATGTG 783
Query 889 AGGAGCTACCTCTACTGTGAAGACGTTGCTGAGGCTTTTGAAGTTGTTCTTCACAA-GGG 947
|| |||||||||||||| ||||| ||||| ||||| ||||| |||||||||||||| |||
Sbjct 784 AGAAGCTACCTCTACTGCGAAGATGTTGCCGAGGCATTTGAGGTTGTTCTTCACAAAGGG 843
Query 948 AGAAGTTGGCCATGTTTACAATATTGGGACGAA-GA-AGGAGAGGAGAGTGAAT-GATGT 1004
|||||| |||||| |||||||| ||||| || || || | |||||||||| | || ||
Sbjct 844 -GAAGTTAACCATGTCTACAATATAGGGAC-AACGAGAGAA-AGGAGAGTGA-TCGACGT 899
Query 1005 TGCCAAAGACATCTGCAAACTCTTCAACATGGACCCTGAGGCGAACAT-CAAGTTTGTCG 1063
|| || |||||| | |||||||| || |||||||| | | ||| || |||||| |
Sbjct 900 GGCTAATGACATCAGTAAACTCTTTGGGATAGACCCTGACTCCACCATTCA-GTTTGTGG 958
Query 1064 ACAACAGACCTTTTAACGATCAGAGGTACTTCCTTGACGATCAGAAGCTCAA-AAAGTTG 1122
| ||| | || || || || ||||||||||| || || || |||||||| || ||| |||
Sbjct 959 AGAACCGCCCATTCAATGACCAGAGGTACTTTCTGGATGACCAGAAGCTGAAGAAA-TTG 1017
Query 1123 GGATGGTCAGAGAGAACCACGTGGGAAGAAGGGTTGAAGAAAACTATGGATTGGTACACA 1182
||||||| ||| |||||| ||||||||||| ||| ||| || ||||| ||||||||
Sbjct 1018 GGATGGTGTGAGCGAACCAATTGGGAAGAAGGACTGAGGAAGACAATGGAATGGTACACT 1077
Query 1183 CAGAACCCGGAGTGGTGGGGTGATGTTTCTGGAGCAT-TGCTTCCTCATCCAAGGATGCT 1241
||||||| ||||||||||| |||||||||||||| | |||||||||||||| |||||||
Sbjct 1078 GAGAACCCTGAGTGGTGGGGAGATGTTTCTGGAGC-TCTGCTTCCTCATCCACGGATGCT 1136
Query 1242 GATGATGCCTGGTGGGCGACACTTTGATGGCTC 1274
||||||||| |||| ||||||| ||| |||||
Sbjct 1137 GATGATGCCCGGTGACCGACACTCTGACGGCTC 1169
> Ahg477022 jgi|Araly1|477022|fgenesh2_kg.2__2152__AT1G78580.1
Length=3046
Score = 126 bits (68), Expect = 7e-28
Identities = 82/88 (93%), Gaps = 3/88 (3%)
Strand=Plus/Minus
Query 2378 TTGTTCTC-ATTTGTGTCATAAGTTGCTCTACTCTTATTATATTAGAATCAAACCACTAA 2436
|||||| | |||| ||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 3046 TTGTTCACAATTT-TGTCATAAGTTGCTCTACTCTTATTTTATAAGAATCAAACCACTAA 2988
Query 2437 A-GAGTCTGGTAATGGCTGCTTTTTGTT 2463
| ||||||||||||||||||||||||||
Sbjct 2987 AAGAGTCTGGTAATGGCTGCTTTTTGTT 2960
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92825927065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5