BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78580.1
Length=3190
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477022 jgi|Araly1|477022|fgenesh2_kg.2__2152__AT1G78580.1 2819 0.0
Ahg889395 jgi|Araly1|889395|Al_scaffold_0007_1381 1256 0.0
Ahg477021 jgi|Araly1|477021|fgenesh2_kg.2__2151__AT1G78570.1 150 5e-35
> Ahg477022 jgi|Araly1|477022|fgenesh2_kg.2__2152__AT1G78580.1
Length=3046
Score = 2819 bits (1526), Expect = 0.0
Identities = 1669/1738 (96%), Gaps = 10/1738 (1%)
Strand=Plus/Plus
Query 1447 AAAAACTCACAAGCCAAGTTCATGAAATTGTTGGACGCATTAATGGTCGTTTTGGGACAC 1506
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1312 AAAAACTCACAAGCCAAGTTCATGAAATTGTTGGACGCATTAATGGTCGCTTTGGGACAC 1371
Query 1507 TGACTGCAGTTCCAATACATCATCTGGATCGGTCTCTGGACTTTCATGCTTTATGTGCAC 1566
||||||| |||||||||||||| |||||||| |||||||||||| ||||||||||||| |
Sbjct 1372 TGACTGCTGTTCCAATACATCACCTGGATCGTTCTCTGGACTTTTATGCTTTATGTGCCC 1431
Query 1567 TTTATGCCGTCACAGATGTTGCGCTTGTAACATCTTTGAGAGATGGGATGAATCTTGTCA 1626
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1432 TTTATGCCGTCACAGATGTTGCACTTGTCACATCTTTGAGAGATGGGATGAATCTTGTCA 1491
Query 1627 GTTATGAGTTTGTTGCTTGCCAAGAGGCCAAAAAGGGCGTCCTCATTCTCAGTGAATTTG 1686
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1492 GTTATGAGTTTGTTGCTTGCCAAGAGGCCAAAAAGGGGGTCCTCATTCTCAGTGAATTTG 1551
Query 1687 CAGGTGCTGCACAGTCTCTGGGTGCTGGAGCTATTCTTGTGAATCCTTGGAACATCACAG 1746
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1552 CAGGTGCTGCACAGTCTCTGGGTGCTGGAGCTATTCTTGTGAATCCTTGGAACATTACAG 1611
Query 1747 AAGTTGCTGCCTCCATTGGACAAGCCCTAAACATGACAGCTGAAGAAAGAGAGAAAAGAC 1806
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1612 AAGTTGCTGCCTCCATTGGACAGGCCCTAAACATGACAGCTGAAGAAAGAGAGAAAAGAC 1671
Query 1807 ATCGCCATAATTTTCATCATGTCAAAACTCACACTGCTCAAGAATGGGCTGAAACTTTTG 1866
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1672 ATCGGCATAATTTTCATCATGTCAAAACTCACACTGCTCAAGAATGGGCTGAAACTTTTG 1731
Query 1867 TCAGTGAACTAAATGACACTGTAATTGAGGCGCAACTACGAATTAGTAAAGTCCCACCAG 1926
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1732 TCAGTGAACTAAATGACACTGTAATTGAGGCACAACTACGAATTAGTAAAGTCCCACCTG 1791
Query 1927 AGCTTCCACAGCATGATGCAATTCAACGGTATTCAAAGTCCAACAACAGGCTTCTAATCC 1986
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1792 AGCTTCCACAGCATGATGCAATTCAACGGTATTCAAAGTCCAACAACAGGCTACTGATCC 1851
Query 1987 TGGGTTTCAATGCAACATTGACTGAACCAGTGGATAATCAAGGGAGAAGAGGTGATCAAA 2046
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1852 TGGGTTTCAATGCAACATTGACTGAACCAGTAGATAATCAAGGGAGAAGAGGTGATCAAA 1911
Query 2047 TAAAGGAGATGGATCTTAATCTACACCCTGAGCTTAAAGGGCCC-TTAAAGGCATTATGC 2105
||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||
Sbjct 1912 TAAAGGAGATGGATCTTAATCTACACCCTGAGC-TAAAAGGCCCGTTAAAGGCATTATGC 1970
Query 2106 AGTGATCCAAGTACAACCATAGTTGTTCTGAGCGGAAGCAGCAGAAGTGTTTTGGACAAA 2165
|||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct 1971 AGTGATCCAAGTACAACCATAGTTGTCCTCAGCGGAAGCAGCAGAAGCGTTTTGGACAAA 2030
Query 2166 AACTTTGGAGAGTATGACATGTGGCTGGCAGCAGAAAATGGGATGTTCCTAAGGCTTACG 2225
||||||||||||||||| |||||| | || || ||||||||||||||||||||||| ||
Sbjct 2031 AACTTTGGAGAGTATGATATGTGGTTAGCTGCCGAAAATGGGATGTTCCTAAGGCTGACA 2090
Query 2226 AATGGAGAGTGGATGACTACAATGCCAGAACACTTGAACATGGAATGGGTTGATAGCGTA 2285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2091 AATGGAGAGTGGATGACTACAATGCCAGAACACTTGAACATGGAATGGGTTGATAGCGTA 2150
Query 2286 AAGCATGTTTTCAAGTACTTCACTGAGAGAACTCCCAGGTCACACTTTGAAACTCGCGAT 2345
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2151 AAGCATGTTTTCAAGTACTTCACTGAGAGAACTCCCAGGTCACACTTTGAAACACGCGAT 2210
Query 2346 ACTTCGCTTATTTGGAACTACAAATATGCAGATATCGAATTCGGGAGACTTCAAGCAAGA 2405
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2211 ACTTCACTTATTTGGAACTACAAATATGCAGATATCGAATTCGGGAGAATTCAAGCAAGA 2270
Query 2406 GATTTGTTACAACACTTATGGACAGGTCCAATCTCTAATGCATCAGTTGATGTTGTCCAA 2465
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2271 GATTTGTTACAACACTTATGGACAGGTCCAATCTCAAATGCATCAGTTGATGTTGTCCAA 2330
Query 2466 GGAAGCCGCTCTGTGGAAGTCCGTGCAGTTGGTGTCACAAAGGGAGCTGCAATTGATCGT 2525
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 2331 GGAAGCCGCTCTGTGGAAGTCCGTGCAGTTGGTGTCACAAAGGGAGCGGCAATCGATCGC 2390
Query 2526 ATTCTAGGAGAGATAGTGCATAGCAAGTCGATGACTACACCAATCGATTACGTCTTGTGC 2585
|||||||| |||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 2391 ATTCTAGGCGAGATAGTGCATAGCAAGTCGATGACCACACCGATAGATTACGTCTTGTGC 2450
Query 2586 ATTGGTCATTTCTTGGGGAAGGACGAAGATGTTTACACTTTCTTCGAACCAGAACTTCCA 2645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2451 ATTGGTCATTTCTTGGGGAAGGACGAAGATGTTTACACTTTCTTCGAACCAGAACTTCCA 2510
Query 2646 TCCGACATGCCAGCCATTGCACGATCCAGACCATCATCTGACAGTGGAGCCAAGTCATCA 2705
|||||||| ||||||||||||||| ||| |||||||||||| |||||| |||||||||||
Sbjct 2511 TCCGACATCCCAGCCATTGCACGAGCCAAACCATCATCTGAGAGTGGAACCAAGTCATCA 2570
Query 2706 TCAGGAGACCGAAGACCACCTTCAAAGTCGACACATAACAACAACAAAAGTGGATCAAAA 2765
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 2571 TCAGGAGACCGAAGACCGCCTTCAAAGTTGACACATAACAACAACAAAAGTGGATCAAAA 2630
Query 2766 TCCTCATCATCCTCTAACTCTAACAACAACAACAAGTCCTCACAGAGATCTCTTCAGTCA 2825
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2631 TCTTCATCATCCTCTAACTCTAACAACAACAACAAGTCCTCACAGAGATCTCTCCAGTCA 2690
Query 2826 GAGAGAAAAAGTGGATCCAACCATAGCTTAGGAAACTCAAGACGTCCTTCACCAGAGAAG 2885
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2691 GAGAGAAAAAGTGGATCCAACCATAGTTTAGGAAACTCAAGACGTCCTTCACCAGAGAAG 2750
Query 2886 ATCTCATGGAATGTGCTTGACCTCAAAGGAGAGAACTACTTCTCTTGCGCTGTGGGTCGT 2945
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 2751 ATCTCATGGAATGTACTTGACCTCAAAGGAGAGAACTACTTCTCTTGCGCCGTGGGCCGT 2810
Query 2946 ACTCGCACCAATGCTAGATATCTCCTTGGCTCACCTGACGACGTCGTTTGCTTCCTTGAG 3005
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2811 ACTCGCACCAATGCTAGATATCTCCTTGGCTCACCTGACGACGTTGTTTGCTTCCTTGAG 2870
Query 3006 AAGCTCGCTGACAC--C-ACTTCCT-CACCTTAATATCCCGAGACAGTGTCAAGTGAGTT 3061
|||||||||||||| | || || | ||||||||||||||||||| ||||||||||||||
Sbjct 2871 AAGCTCGCTGACACGACGACGTC-TGCACCTTAATATCCCGAGACGGTGTCAAGTGAGTT 2929
Query 3062 CATGTAACCCAATAAAAACTATTGTTTTGTAACAAAAAGCAGCCATTACCAGACTCTTT- 3120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2930 GATGTAACCCAATAAAAACTATTGTTTTGTAACAAAAAGCAGCCATTACCAGACTCTTTT 2989
Query 3121 AGTGGTTTGATTCTAATATAATAAGAGTAGAGCAACTTATGACACAAAT-GAGAACAA 3177
|||||||||||||| ||| ||||||||||||||||||||||||| |||| | ||||||
Sbjct 2990 AGTGGTTTGATTCTTATAAAATAAGAGTAGAGCAACTTATGACA-AAATTGTGAACAA 3046
Score = 2078 bits (1125), Expect = 0.0
Identities = 1219/1266 (96%), Gaps = 0/1266 (0%)
Strand=Plus/Plus
Query 178 GTGTTTTGGTTCTGTTTTGGTGTGAGCGTATGCCTGGAAATAAGTACAACTGCAGTTCTT 237
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 7 GTGTTTTGGTTCTGTTTTGGTGTGAGCGTATGCCTGGAAATAAGTACAACTGTAGTTCTT 66
Query 238 CTCATATCCCACTCTCTCGAACAGAACGCCTCTTgagagatagagagcttagagagaaga 297
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 67 CTCATATCCCACTCTCTCGAACAGAACGCCTCTTGAGAGATAGAGAGCTCAGAGAGAAGA 126
Query 298 ggaagagCAACCGAGCTCGTAATCCTAATGACGTTGCTGGCAGTTCCGAGAACTCTGAGA 357
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 127 GGAAGAGCAACCGAGCTCGTAATCCTAATGACATTGCTGGCAGTTCCGACAACTCTGAGA 186
Query 358 ATGACTTGCGTTTAGAAGGTGACAGTTCAAGGCAGTATGTTGAACAGTACTTGGAAGGGG 417
| ||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
Sbjct 187 ACGACCTGCGTTTAGAAGGAGACAGTTCAAGGCAATATGTTGAACAGTACTTGGAAGGTG 246
Query 418 CTGCTGCTGCAATGGCGCACGATGATGCGTGTGAGAGGCAAGAAGTTAGGCCTTATAATA 477
|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
Sbjct 247 CTGCTGCTGCAATGGCCCACGATGATGCGTGTGAGAGGCAAGAAGCTAGGCCTTATAACA 306
Query 478 GGCAACGACTACTTGTAGTGGCTAACAGGCTCCCAGTTTCTGCCGTGAGAAGAGGTGAAG 537
||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 307 GGCAACGGCTTCTTGTAGTGGCTAACAGGCTCCCAGTTTCTGCCGTGCGAAGAGGTGAAG 366
Query 538 ATTCATGGTCTCTTGAGATCAGTGCTGGTGGTCTAGTCAGTGCTCTCTTAGGTGTAAAGG 597
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 367 ATTCATGGTCTCTCGAGATCAGTGCTGGTGGTCTAGTTAGTGCTCTCTTAGGTGTTAAGG 426
Query 598 AATTTGAGGCCAGATGGATAGGATGGGCTGGAGTTAATGTGCCTGATGAGGTTGGACAGA 657
|||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 427 AATTTGAGGCTAGATGGATTGGATGGGCTGGAGTAAATGTGCCTGATGAGGTTGGACAGA 486
Query 658 AGGCACTTAGCAAAGCTTTGGCTGAGAAGAGGTGTATTCCCGTGTTCCTTGATGAAGAGA 717
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 487 AGGCACTTAGCAAAGCTTTGGCTGAGAAGCGGTGTATACCCGTGTTCCTTGATGAAGAGA 546
Query 718 TTGTTCATCAGTACTATAATGGTTACTGCAACAATATTCTGTGGCCTCTGTTTCACTACC 777
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 547 TTGTTCATCAGTACTATAATGGTTATTGCAACAATATTCTGTGGCCTCTGTTTCACTACC 606
Query 778 TTGGACTTCCGCAAGAAGATCGGCTTGCCACAACCAGAAGCTTTCAGTCCCAATTTGCTG 837
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 607 TTGGACTTCCACAAGAAGATCGGCTTGCTACAACCAGAAGCTTTCAGTCCCAATTTGCTG 666
Query 838 CATACAAGAAGGCAAACCAAATGTTCGCTGATGTTGTAAATGAGCACTATGAAGAGGGAG 897
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 667 CATACAAGAAGGCAAATCAAATGTTCGCTGATGTTGTAAATGAACACTATGAAGAGGGAG 726
Query 898 ATGTCGTCTGGTGCCATGACTATCATCTTATGTTCCTTCCTAAATGCCTTAAGGAGTACA 957
||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 727 ATGTCGTCTGGTGTCATGACTATCATCTTATGTTCCTTCCTAAATGCCTTAAAGAATACA 786
Query 958 ACAGTAAGATGAAAGTTGGATGGTTTCTCCATACACCATTCCCTTCGTCTGAGATACACA 1017
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 ATAGTAAGATGAAAGTTGGATGGTTTCTCCATACACCATTCCCTTCGTCTGAGATACACA 846
Query 1018 GGACACTTCCATCACGATCAGAGCTCCTTCGCTCAGTTCTTGCTGCTGATTTAGTTGGCT 1077
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 GGACGCTTCCATCACGATCAGAGCTCCTTCGCTCAGTTCTTGCTGCTGATTTAGTTGGCT 906
Query 1078 TCCATACATATGACTATGCAAGGCACTTTGTGAGTGCGTGCACTCGTATTCTTGGACTTG 1137
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 907 TCCATACATATGACTATGCAAGGCACTTTGTGAGTGCATGCACTCGTATTCTTGGACTTG 966
Query 1138 AAGGAACACCTGAGGGAGTTGAGGATCAAGGCAGGCTCACTCGTGTAGCTGCTTTTCCAA 1197
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 967 AAGGAACACCTGAGGGAGTTGAGGATCAAGGCAGGCTCACACGCGTAGCTGCTTTTCCAA 1026
Query 1198 TTGGCATAGATTCTGATCGGTTTATACGAGCACTTGAGGTCCCCGAAGTCATACAACACA 1257
|||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||
Sbjct 1027 TTGGCATAGATTCTGAGAGGTTTATACGAGCACTTGAGGTCCCTGACGTCATACAACACA 1086
Query 1258 TGAAGGAATTGAAAGAAAGATTTGCTGGCAGAAAGGTGATGTTAGGTGTTGATCGTCTTG 1317
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1087 TGAAGGAATTGAAAGAAAGATTTGCTGGAAGAAAGGTGATGTTAGGTGTTGATCGACTTG 1146
Query 1318 ACATGATCAAAGGGATTCCACAAAAGATTCTGGCATTCGAAAAATTTCTCGAGGAAAATG 1377
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1147 ATATGATCAAAGGGATTCCACAAAAGATTCTGGCATTTGAAAAATTTCTCGAGGAAAATG 1206
Query 1378 CAAACTGGCGTGATAAAGTGGTCTTATTGCAAATTGCGGTGCCAACAAGAACTGACGTTC 1437
||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1207 CAAGCTGGCGTGATAAAGTGGTGTTATTGCAAATTGCGGTGCCAACAAGAACAGACGTTC 1266
Query 1438 CTGAGT 1443
||||||
Sbjct 1267 CTGAGT 1272
> Ahg889395 jgi|Araly1|889395|Al_scaffold_0007_1381
Length=2385
Score = 1256 bits (680), Expect = 0.0
Identities = 1720/2200 (78%), Gaps = 160/2200 (7%)
Strand=Plus/Plus
Query 534 GAAGATTCATGGTCTCTTGA-GATCAGTGCTGGTGGTCTAGTCAGTGCTC-TCTTAGGTG 591
||||| || |||||| || | ||| ||| ||||||||||||| ||||||| || |||||
Sbjct 64 GAAGAGTCTTGGTCT-TTCACGATGAGTCCTGGTGGTCTAGTTAGTGCTCTTC-TAGGTT 121
Query 592 T-AAAGGAATTTGAGGCCAGATGGATAGGATGGGCTGGAGTTA-ATGTGCCTGATGAGGT 649
| ||| ||||||||| ||| |||||| |||||| |||||| || |||| | ||||| | |
Sbjct 122 TGAAA-GAATTTGAGACCAAATGGATTGGATGGCCTGGAG-TAGATGTTCATGATGCGAT 179
Query 650 TGGAC-AGAAGGCACT-TAGCA-AAGCTTTGGCTGAGAAGAGG-TGTATTCCC-GTGTTC 704
||| | | ||| |||| | || | | | ||||| ||| || |||| |||| |||||
Sbjct 180 TGG-CAAAAAGACACTCT-CCATTA-CCCTAGCTGAAAAG-GGATGTA-TCCCAGTGTTT 234
Query 705 CTTGATGAAGAGATTGT-TCATCAGTACTATAATGGTTACTGCAACAATATTCTGTGGCC 763
| || ||||| | ||| | |||| ||||||||||| |||||||| ||||||||||||||
Sbjct 235 C-TG--GAAGA-AGTGTGTGATCAATACTATAATGGCTACTGCAATAATATTCTGTGGCC 290
Query 764 TCTGTTTCACTACCTT-GG-ACTTCCGCAAGAAGATCGGCTTGCCA--CAACCAGAAGC- 818
| |||||||| ||| || || || | |||| ||| | | | | |||||| || |
Sbjct 291 GATTTTTCACTA-CTTGGGAAC-GCCACCAGAATATC-G-TAACGATGCAACCATAA-CA 345
Query 819 TTTCAGTCCCAATTTGCTGCATACAAGAAGGCAAACCAAATGTTCGCTGATGTTG-TAAA 877
| ||||| || | || |||||||||||| ||||| ||||| || |||||||| ||||
Sbjct 346 TACCAGTCACAGTATGATGCATACAAGAAAGCAAATCAAATATTTTTTGATGTTGTTAAA 405
Query 878 TGAGCACTATGAAGAGGGAGATGTCGTCTGGTGCCATGACTATCATCTTATG-TTCCTTC 936
|||||||||||||| |||||||| || ||||||||||| |||||| | ||| || ||||
Sbjct 406 -GAGCACTATGAAGAAGGAGATGTGGTTTGGTGCCATGATTATCATGTCATGCTT-CTTC 463
Query 937 CTAAATGCCTTAAGGAGTACAACAGTAAGATGAAAGTTGGATGGTTTCTCCATACACCAT 996
|| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 CTCAATATCTTAAGGAATACAACAGTAAGATGAAAGTTGGATGGTTTCTCCATACACCAT 523
Query 997 TCCCTTCGTCTGAGATACACAGGACACTT-CCATCACGATCAGAGCTCCTTCGCTCAGTT 1055
| ||||| || ||||| ||| ||| || || || ||||| || || ||||| || |||
Sbjct 524 TTCCTTCTTCCGAGATGTACAAAACA-TTGCCCTCGCGATCCGATCTGCTTCGTTCTGTT 582
Query 1056 CTTGCTGCTGATTTAGTTGGCTTCCATACATATGACTATGCAAGGCACTTTGTGAGTGCG 1115
||| ||||||||||||| || |||||||| ||||| | |||||| || ||| ||| |||
Sbjct 583 CTTACTGCTGATTTAGTCGGTTTCCATACCTATGATTTTGCAAGACATTTTTTGAATGCA 642
Query 1116 TGCAC-TCGTATTCTTGGACTTGAAGGAACACCTGAGGGAGTTGAGGATCAAGGCAG-GC 1173
|||| | ||||||||||| | |||| |||| |||| ||||||| |||||| || | |
Sbjct 643 TGCATGT-GTATTCTTGGAGTGGAAGCAACATCTGAAGGAGTTGTGGATCAGGGAAAAG- 700
Query 1174 TCACTCGTGTAGCTGCTTTTCCAATTGGCATAGATTCTGATCGGTTTATACGAGCACT-- 1231
||||||| ||||||| |||||| ||||| ||||| |||| |||||||| | |||
Sbjct 701 TCACTCGAGTAGCTGTTTTTCCCATTGGGATAGAACCTGAGAGGTTTATAA-A-CACAAG 758
Query 1232 TGAGGTCCCCGAAGTCATACAACACATGAAGGAA-TTGAAAGAAAGATTT-GCTGGCAGA 1289
||| || | |||||| | ||| |||||||| || || ||| || ||||| | ||| |||
Sbjct 759 TGAACTCTCTGAAGTCGTTCAATACATGAAG-AAGTTCAAA-AACGATTTTGGTGGGAGA 816
Query 1290 AAGGTGATGTTAGGTGTTGATCGTCTTGACATGATCAAAGGGATTCCACA-AAAGATTCT 1348
||| |||| ||||||||||||||||| || | |||||||||||||||||| ||| || |
Sbjct 817 AAGTTGATATTAGGTGTTGATCGTCTCGATACGATCAAAGGGATTCCACAGAAATAT-CA 875
Query 1349 GGCATTCGAAAAATTTCTCGAGGAAAATGCAA-ACTGGCGTGATAAAGTGGTCTTA-TTG 1406
|||||| || || ||| | |||||||||| || | ||||||| |||||| | ||| ||
Sbjct 876 GGCATTTGAGAAGTTTTTAGAGGAAAATG-AAGATTGGCGTGGTAAAGTCATGTTACTT- 933
Query 1407 CAAATTGCGGTGCCAACAAG-AACTGACGTTCCTGAGTATCAAAA-ACTCACAAG-CCAA 1463
|| ||||| || |||||||| || || || ||| |||||||| | ||| ||| ||||
Sbjct 934 CAGATTGCAGTACCAACAAGGAA-TGGTATTGGTGAATATCAAAAGA-TCA-AAGACCAA 990
Query 1464 -GTTCATGAA-ATTGTTGGACGCATTAATGGTCGTTTTGGGAC-A-CTGACTGCAGTTCC 1519
|| ||| | || |||||||| ||||||||||||||||| | | || |||| |||||
Sbjct 991 TGT-CATTACCAT-GTTGGACGAATTAATGGTCGTTTTGGTTCCATCT--CTGCTGTTCC 1046
Query 1520 AATACAT-CATCTGGATCGGTCTCTGGACTTTCATGCT-TTATGTGCACTTTATGCCGTC 1577
|||| || ||||||||| | ||| | |||||| || | ||||| ||||| |||||| ||
Sbjct 1047 AATA-ATTCATCTGGATTGTTCTATTGACTTTAAT-CAATTATGCGCACTCTATGCCATC 1104
Query 1578 ACAGATGT-TGCGCTTGTAACATCTTTGAGAGATGGGATGAATCTTGTCAGTTATGAGTT 1636
|||||||| | ||||||||||||||||||||||| ||||| ||||| |||| ||| ||
Sbjct 1105 ACAGATGTATTA-CTTGTAACATCTTTGAGAGATGGAATGAACCTTGTGAGTTCTGAATT 1163
Query 1637 TGTTGCTTGCCAAGAGGCC-AAAAAGGGCGTCCTCATTCTCAGTGAATTTGCAGGTGCTG 1695
| |||| |||||| | | |||||||| || |||||||| || || |||||||||||||
Sbjct 1164 TATTGCCTGCCAAAAAGAAGAAAAAGGG-GTTCTCATTCTAAGCGAGTTTGCAGGTGCTG 1222
Query 1696 CACAGTCTCTGGGTGCTGGAGCTATTCTTGTGAATCCTTGGAACATCACAGAAGT-TGCT 1754
|||||| || |||||||||||| |||| ||||||||||||||||| | |||||| | ||
Sbjct 1223 GACAGTCACTTGGTGCTGGAGCTCTTCTAGTGAATCCTTGGAACATTAAAGAAGTGT-CT 1281
Query 1755 GCCT-CCATTGGACAAGCCCTAAACATGACAGC-TGAAGAAA-G-AGAGAAAAGACATCG 1810
| | |||||||| |||| ||||| ||| || | |||||||| | |||||||| |||
Sbjct 1282 AC-TGCCATTGGAGAAGCTCTAAATATGTCA-CATGAAGAAAAGGAGAGAAAA--CATAA 1337
Query 1811 CCAT-AATTTTCA-TCATGTCAAAACTCA--C-ACT--GC--T---CA-A-GA----ATG 1852
|| |||||||| | |||| |||||||| | ||| || | || | || |||
Sbjct 1338 A-ATCAATTTTCAGT-ATGTGAAAACTCATTCTACTCAGCAGTGGGCAGATGATTTCATG 1395
Query 1853 --G--G-CTG--A-AA-C-TTTTGT-CAGTGAACTAAAT-GACACTGTAATTGAGGC-GC 1899
| | || | || | |||| | |||| |||| | | || | | || | | || |
Sbjct 1396 AAGATGACTCTTACAAACCTTTTTTGCAGTAAACTTA-TCGAAATTACAACTAACGCTG- 1453
Query 1900 AACTACGAATTAGTAAAGTCCCACCAGAGCTTCCACAGCATGATGCAATTCAACGGTATT 1959
| |||||| | | |||| ||||| || ||||| | ||||||| ||||||| || |
Sbjct 1454 AGCTACGAGCTGGAAAAGCCCCACTTGAACTTCCTGAACATGATGTGATTCAACAATACT 1513
Query 1960 CAAAGTCCAACAACAGGCTTCTAATCCTGGGTTTCAATGCAACATTGACTGAACC-AGTG 2018
||||||| ||||| || || ||||| || || ||| ||| ||| | ||| | || | ||
Sbjct 1514 CAAAGTCTAACAATAGACTGCTAATTCTTGGATTCTATGGAACGCTCACTCAGCCGA-TG 1572
Query 2019 GATAATCAAGGGAGAAGAGGTGATCAAATAAAGGAGATGGATCTT-AATCTACACCCTGA 2077
| ||||||| ||||||||| || | ||| ||| ||||| || || ||||| |
Sbjct 1573 AAAAATCAAGAGAGAAGAGGCGA-C-------GGA-ATGAATCTTGAA-CTGCACCCACA 1622
Query 2078 GCTTAAAGG--GCCCTTAAAGGCATTATGCAGTGATCCAAGTACAACCA-TAGTTGTTCT 2134
| |||||| | | | |||| ||||||||||||||||| ||||| | ||||||| ||
Sbjct 1623 GGTTAAAGAAAGAC-TCAAAGA-ATTATGCAGTGATCCAAAAACAAC-AGTAGTTGTCCT 1679
Query 2135 GAGCGGAAGCAGCAGAA-GTGTTTTGGACAAAAACTTTGGAGAGTATGACATGTGGCTGG 2193
|||| |||| | | || | | ||||| |||||||||||||| ||| |||||||| | |
Sbjct 1680 GAGCAGAAGT-GAAAAAAGCATATTGGATAAAAACTTTGGAGAATATAACATGTGGTTAG 1738
Query 2194 CAGCAGAAAATGGGATGTTCCTAAGGCTTACGAA-TGGAGAGTGGATGACTACAATGCCA 2252
| || |||||||||||||| ||||||| ||| || |||||| ||| |||| | ||| |||
Sbjct 1739 CTGCTGAAAATGGGATGTTTCTAAGGCATAC-AAGTGGAGAATGGGTGACAAGAATTCCA 1797
Query 2253 GAACACTTGAACATGGAATGGGTTGATAGCGTAAAGCATGTTTTCAAGTACTTCACTGAG 2312
|||||| ||||| | |||||| ||||| | || ||||||||||||||||||||||||||
Sbjct 1798 GAACACATGAACTTTGAATGGATTGATGGTGTCAAGCATGTTTTCAAGTACTTCACTGAA 1857
Query 2313 AGAACTCCCAGG-TCACA-CTTTGAAACTCGCGATACTTCGCTTATTTGGAACTACAAAT 2370
|||||||| ||| ||| | || ||||| |||| ||||||||| | ||||||||| |||
Sbjct 1858 AGAACTCC-AGGATCATATCTC-GAAACAAGCGAGACTTCGCTTGTATGGAACTACGAAT 1915
Query 2371 ATGCAGATA-TCGAATTCGGGAGA-CTTCAAGCAAGAGATTTGTTACAACACTTATGGAC 2428
|||||||| | ||||| |||||| || ||||||||||| ||||||||||||| ||| |
Sbjct 1916 ATGCAGATGCT-GAATTTGGGAGAGCT-CAAGCAAGAGACATGTTACAACACTTGTGGGC 1973
Query 2429 AGGTCCAATCTCTAATGCATCAGTTGATGTTGTCCAAGGAAGCCGCTCTGTGGAAGTCCG 2488
||| |||||||||||||||||||| |||||||| | |||| ||| |||||| |||||||
Sbjct 1974 AGGACCAATCTCTAATGCATCAGTGGATGTTGTTCGAGGAGGCCACTCTGTTGAAGTCCA 2033
Query 2489 TGCAGTTGGTGTCACAAAGGGA-GCTGCAATTGATCGTATTCTAGGAGAGA-TAGTGCAT 2546
||| |||||||| ||||||||| | |||||| || |||||||| |||| || |||||||
Sbjct 2034 TGCCGTTGGTGTGACAAAGGGAAG-TGCAATGGAGCGTATTCTCGGAG-GAATAGTGCAC 2091
Query 2547 AGCAAGTCGATGACTACACCAATCGATTACGTCTTGTGCATTGGTCATTTCTTGGGGAAG 2606
| |||||| |||||| ||||||| ||||| ||||||||||||||| ||||||||||||
Sbjct 2092 AACAAGTCAATGACTGCACCAATTGATTATGTCTTGTGCATTGGTTGTTTCTTGGGGAAA 2151
Query 2607 GACGAAGATGTTTACACTTTCTTCGAACCAGAACTT-CCA 2645
|||||||| |||||||| |||||||| || ||| || |||
Sbjct 2152 GACGAAGACGTTTACACATTCTTCGAGCCTGAAGTTACCA 2191
> Ahg477021 jgi|Araly1|477021|fgenesh2_kg.2__2151__AT1G78570.1
Length=2423
Score = 150 bits (81), Expect = 5e-35
Identities = 95/101 (94%), Gaps = 3/101 (3%)
Strand=Plus/Minus
Query 3092 AACAAAAAGCAGCCATTACCAGACTC-TTTAGTGGTTTGATTCTAATATAATAAGAGTAG 3150
|||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||
Sbjct 2423 AACAAAAAGCAGCCATTACCAGACTCTTTTAGTGGTTTGATTCTTATAAAATAAGAGTAG 2364
Query 3151 AGCAACTTATGACACAAAT-GAGAACAAGCTCTTATTACAT 3190
|||||||||||||| |||| | |||||||||||||||||||
Sbjct 2363 AGCAACTTATGACA-AAATTGTGAACAAGCTCTTATTACAT 2324
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120517535180
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5