BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G78600.2 Length=1377 Score E Sequences producing significant alignments: (Bits) Value Ahg477024 jgi|Araly1|477024|fgenesh2_kg.2__2154__AT1G78600.1 880 0.0 > Ahg477024 jgi|Araly1|477024|fgenesh2_kg.2__2154__AT1G78600.1 Length=1130 Score = 880 bits (476), Expect = 0.0 Identities = 613/674 (91%), Gaps = 29/674 (4%) Strand=Plus/Plus Query 228 TTTTTGCGTTTTCTGGATGAGTTTGAGATAAGAGAAGATGAAGATTCAGTGTAACGTTTG 287 |||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||| Sbjct 23 TTTTTGGGTTTTCTGGATGAGTTTGAGATAAGAGAGGATGAAGATTCAGTGCAACGTTTG 82 Query 288 TGAGGCGGCGGAAGCGACGGTTCTATGTTGCGCCGACGAGGCTGCTCTTTGTTGGGCTTG 347 ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| || Sbjct 83 TGAGGCGGCGGAAGCGACGGTGCTATGTTGCGCCGACGAGGCTGCTCTGTGTTGGGCATG 142 Query 348 CGATGAGAAAATTCACGCCGCTAATAAACTCGCCGGAAAACATCAGAGAGTCCCTCTCTC 407 |||||||||| | ||||| ||||||||||||||||||||||| |||||||| |||||||| Sbjct 143 CGATGAGAAAGTCCACGCTGCTAATAAACTCGCCGGAAAACACCAGAGAGTTCCTCTCTC 202 Query 408 TGCCTCTGCCTCTTCCATACCCAAATGTGACATTTGTCAGGAAGCATCTGGATTCTTCTT 467 || |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 203 TGTCTCTTCCTCTTCCATACCCAAATGCGACATTTGTCAGGAAGCATCTGGATTCTTCTT 262 Query 468 TTGTCTGCAAGATAGAGCTTTGCTATGTAGGAAATGTGATGTTGCAATCCACACTGTGAA 527 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 263 CTGTCTGCAAGATAGAGCTTTACTATGTAGGAAATGTGATGTTGCAATCCACACTGTAAA 322 Query 528 TCCTCATGTTTCAGCTCACCAGAGATTTCTTCTCACTGGAATCAAAGTTGGTCTTGAATC 587 |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 323 TCCTCATGTTTCAGCTCATCAGAGATTTCTTCTGACTGGAATCAAAGTTGGTCTTGAATC 382 Query 588 TATAGACACTGGTCCTTCTACTAAATCCTCACCTACCAATGATGATAAAACCATGGAGAC 647 ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 383 TATAGACACTGGTCCTTCTACAAAATCCTCACCAACCAATGATGATAAAACCATGGAGAC 442 Query 648 CAAACCTTTTGTTCAATCTATACCTGAGCCTCAAAAGATGGCCTTCGATCATCATCATCA 707 ||| |||||||||||||||||||||||||||||||||||| | | | || Sbjct 443 GAAATCTTTTGTTCAATCTATACCTGAGCCTCAAAAGATGG-----G-T--T--TC---- 488 Query 708 CCAGCAGCAGCAGGAACAGCAGGAAGGAGTTATACCGGGAACTAAAGTCAATGATCAGAC 767 | | |||||| || |||| | || |||||| ||||||||||| |||||| || Sbjct 489 ---G-ATCAGCAG---CA--AGGA-GT--TT-TACCGGAAACTAAAGTCAGTGATCACAC 535 Query 768 ATCGACAAAGCTTCCTCTCG-TAAGTAGCGGATCAACTACTGGAAGCATTCCTCAGTGGC 826 ||| |||||||||||| ||| || | |||||||||||||||||||||||||||||||||| Sbjct 536 ATCTACAAAGCTTCCTTTCGCTA-GCAGCGGATCAACTACTGGAAGCATTCCTCAGTGGC 594 Query 827 AAATAGAGGAGATTTTCGGGCTAACCGACTTTGATCAGAGCTATGAATACATGGAGAATA 886 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 595 AAATAGAGGAGATTTTCGGACTAACCGACTTTGATCAGAGCTATGAATACATGGAGAATA 654 Query 887 ATGGATCATCTAAG 900 |||||||||||||| Sbjct 655 ATGGATCATCTAAG 668 Score = 649 bits (351), Expect = 0.0 Identities = 396/418 (95%), Gaps = 1/418 (0%) Strand=Plus/Plus Query 961 GCGGATACTAGTAGACGAGGAGATTCAGACAGTTCTTCGATGATGAGATCTGCAGAAGAA 1020 ||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 669 GCGGATACTTGTAGACGAGGAGATTCAGACAGTTCTTCCATGATGAGATCTGCCGAAGAA 728 Query 1021 GATGGAGAAGATAACAATAACTGCTTGGGAGGTGAGACATCATGGGCGGTTCCACAGATT 1080 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 729 GATGGAGAAGATAACAATAACTGCTTGGGAGGTGAGACATCATGGGCGGTTCCACAGATT 788 Query 1081 CAGTCTCCACCTACAGCGTCTGGTCTAAACTGGCCTAAGCATTTTCACCACCACTCTGTG 1140 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 789 CAGTCTCCACCTACAGCTTCTGGTCTAAACTGGCCTAAGCATTTTCACCACCACTCAGTG 848 Query 1141 TTTGTTCCGGACATAACTTCTTCAACTCCTTATACCGGTTCATCCCCGAATCAAAGGGTT 1200 |||||||||||||||| || ||||||||||||| |||||||||||||||| ||||||||| Sbjct 849 TTTGTTCCGGACATAAATTTTTCAACTCCTTATTCCGGTTCATCCCCGAACCAAAGGGTT 908 Query 1201 GGGAAACGGCGGCGACGGTTCTAGCATTTGTAATTATCTTTTAGCCGCTTGAGAAAAGAG 1260 ||||||||| ||||||||||||| |||| || |||||||| |||| |||||||||||| Sbjct 909 GGGAAACGGTGGCGACGGTTCTAACATTCACAACTATCTTTTGGCCGTTTGAGAAAAGAG 968 Query 1261 ATTGGCAGCTTT-CTCAGTAGATGTAAGATCACATAAATGATTTGGAAACTTGTAATGTA 1319 || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 969 ATGGGCAGCTTTTCTCAGTAGATGTAAGATCACATAAATGATTTGGAAACTTGTAATGTA 1028 Query 1320 GTGATCTGTGAGAGTCGGTGTTCTTTGTTAGCTGaaaaaacaaaaaGATGTTTATTTG 1377 |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct 1029 GTGATCTGTGAGAGTCCATGTTCTTTGTTAGCTGAAAAAACAAAAAGATGTTAATTTG 1086 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51542183784 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5