BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G78630.1 Length=1019 Score E Sequences producing significant alignments: (Bits) Value Ahg477028 jgi|Araly1|477028|fgenesh2_kg.2__2158__AT1G78630.1 1524 0.0 > Ahg477028 jgi|Araly1|477028|fgenesh2_kg.2__2158__AT1G78630.1 Length=981 Score = 1524 bits (825), Expect = 0.0 Identities = 895/929 (96%), Gaps = 4/929 (0%) Strand=Plus/Plus Query 3 AAAGAGCAGAAGAAATTTGCAGAAGAGAGAAAAACAAAAATGGCGGTTCTTTGCTCGTCT 62 |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1 AAAGAGCAGAAGAATTTTGCAGAAGAAAGAAAAACAAAAATGGCGGTTCTTTGCTCGTCT 60 Query 63 TCGACGGTGATACTCTCTTCTTCTTCCGTGAAATCCTCCGGAAGTGAGAGAAAGTCTCCG 122 ||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||| Sbjct 61 TCGACGGTGATACTCCCTACTTCTTCCGTGAAATCCTCCGGTTGTGAGAGAAAGTCTCCG 120 Query 123 TTTTTAGGGTTCTCTTTAACGGCTATCTCGAAGCCGTCGGTACGAGTCGGCATTTATGCG 182 ||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||| Sbjct 121 TTTTTAGGGTTCTCTCTAACGGCTATCTCGAAGCCGTCGGTAAGAGTTGGCATTTATGCG 180 Query 183 AATTCGAAAAGAGGATTGCAAGTGAAGTGTGAAGCTGAGC---CGACGACGACGACTTCT 239 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 181 AATTCGAAAAGAGGATTGCAAGTGAAGTGTGAAGCTGAGCAGACGACGACGACGACTTCT 240 Query 240 CTTGTTCCGGCGAATCAACGATGGATGTTCGACGAAGAAGAAGCTAATGGCCCTGACATC 299 ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 241 CTTGTTCCGGCGAATCAGCGATGGATGTTCGACGAAGAAGAAGCCAATGGCCCTGACATC 300 Query 300 TGGAACACGACATGGTATCCAAAAGCTTCAGACCATGTGAACACGGACAAGCCCTGGTTT 359 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 301 TGGAACACGACATGGTATCCAAAAGCTTCAGACCATGTGAACACGGATAAGCCCTGGTTT 360 Query 360 GTGGTTGATGCAACTGACAAAATTCTTGGTAGATTGGCATCGACAATTGCTAATCACATC 419 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 361 GTGGTTGATGCAACTGACAAAATTCTTGGTAGATTGGCATCAACAATTGCTAATCACATC 420 Query 420 CGTGGGAAGAATCTTGCCTCTTACACTCCTAGTGTCGACATGGGAGCTTTTGTGATTGTG 479 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 421 CGTGGGAAGAATCTTGCCTCTTACACTCCTAGTGTTGACATGGGAGCCTTTGTGATTGTG 480 Query 480 GTGAATGCTGAGAAAGTTGCTGTATCTGGAAAGAAGCGTAACCAAAAGCTGTACAGGAGG 539 |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 481 GTGAATGCTGAGAAAGTTGCTGTATCTGGAAAAAAGCGGAACCAAAAGCTGTACAGGAGG 540 Query 540 CATTCAGGACGACCTGGTGGTATGACAGTAGAGACATTTGATCAATTGCAGCAGAGAATT 599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 CATTCAGGACGACCTGGTGGTATGACAGTAGAGACATTTGATCAATTGCAGCAGAGAATT 600 Query 600 CCTGAAAGAATCGTTGAGCATGCTGTTCGTGGAATGCTTCCAAAGGGACGGCTTGGGAGA 659 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 601 CCTGAAAGAATCGTTGAGCATGCTGTTCGTGGAATGCTTCCAAAGGGAAGGCTTGGGAGA 660 Query 660 GCTCTGTTCAATCACCTGAAGGTGTACAAAGGCCCTGACCATCCTCACGAGGCCCAGAAA 719 ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 661 GCTCTGTTCAATCACCTGAAGGTGTACAAAGGCCCGGACCATCCACACGAGGCCCAGAAG 720 Query 720 CCGCTTGATCTGCCTATCAGGGACAAGAGAATACAGCTGCAAAAATAGAAGCTCCACCAC 779 ||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||| Sbjct 721 CCGCTTGATCTGCCTATTAGGGACAAGAGAATACAGCTGCAAAAATAGAAGCACCTCCAC 780 Query 780 TGTTCCATTATCGCCAAGCGCAGAGAGTTTTTTCTTCTCAGGTTTCTGTAGTTTCTTCAT 839 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 TGTTCCATTATCGCCAAGCGCAGAGAGTTTTTTCTTCTCAGGTTTCTGTAGTTTCTTCAT 840 Query 840 CCCAAAACCAGAGGAGGCTTTACAGATTCTTGTTTTCGCTTCTATCAACTCTGTTATGCT 899 | |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| Sbjct 841 TC-AAAACCAGAGGAGGCTTTGCAGATTCTTGTTATCGCTTCTATCAACTCTGTTATGCT 899 Query 900 ACAAAACTTTCTAATTTGAAATATTTCTC 928 | ||| ||||||||| ||||||||||||| Sbjct 900 ATAAAGCTTTCTAATGTGAAATATTTCTC 928 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37894179498 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5