BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78680.1
Length=1429
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951932 jgi|Araly1|951932|scaffold_26200003.1 1688 0.0
Ahg316768 jgi|Araly1|316768|fgenesh1_pm.C_scaffold_2001801 1591 0.0
Ahg477030 jgi|Araly1|477030|fgenesh2_kg.2__2160__AT1G78660.2 905 0.0
Ahg927282 jgi|Araly1|927282|scaffold_202843.1 712 0.0
Ahg951931 jgi|Araly1|951931|scaffold_26200002.1 689 0.0
Ahg359459 jgi|Araly1|359459|fgenesh1_pg.C_scaffold_262000001 623 1e-177
> Ahg951932 jgi|Araly1|951932|scaffold_26200003.1
Length=1087
Score = 1688 bits (914), Expect = 0.0
Identities = 1033/1090 (95%), Gaps = 10/1090 (1%)
Strand=Plus/Plus
Query 132 GATCTTTCCTCTTCCTCTGAGATGTGGAGCTACGTTTGG-T--TACCGTTGGTAGCTCTA 188
|||||||| |||||||||||||||||||||| || ||| | ||||||||||| |||
Sbjct 3 GATCTTTCATCTTCCTCTGAGATGTGGAGCTTTGTCTGGTTAGTACCGTTGGTA---CTA 59
Query 189 TCTCT-CTTTAAGGATAGCATCATAATGGCCAAGGCTGCGACGATTCTCCTCCCTAGTCA 247
||||| | |||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 60 TCTCTGC-TTAAGGATAGCATCATAATGGCCAAGTCTGCGGCGATTCTCCTCCCTAGTCA 118
Query 248 AACCGGATTTGATATTTCTCGGAGTCCGGTATGCTCTGCTCCGGATCCGAACCTAAATTA 307
|||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 119 AACCGGATTTGATATTTCTCGGAGTCCGGTATGCTCCGCGCCGGATCCGAACCTCAATTA 178
Query 308 CAGACCGGTTATTGGTATTCTGAGCCATCCTGGCGACGGTGCGTCAGGTCGTTTGAGCAA 367
||| ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 179 CAGGCCGGTTATTGGGATTCTGAGCCATCCTGGTGACGGTGCGTCGGGTCGTTTGAGCAA 238
Query 368 TGCTACAGACGCGTCCTCCATTGCGGCTTCGTATGTGAAATTAGCTGAGTCTGGTGGAGC 427
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TGCTACAGACGCGTCGTCCATTGCGGCTTCGTATGTGAAATTAGCTGAGTCTGGTGGAGC 298
Query 428 ACGTGTGATCCCACTCATCTTTAACGAGCCTGAAGAAATTCTCTTTCAGAAGCTAGAATT 487
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 299 ACGTGTGATCCCACTCATCTATAACGATCCTGAAGAAATTCTCTTTCAGAAGCTAGAATT 358
Query 488 GGTCAACGGTGTGATACTAACTGGTGGTTGGGCTAAAGAAGGATTGTATTTTGAAATCGT 547
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GGTCAACGGTGTGATACTCACTGGTGGTTGGGCTAAAGAAGGATTGTATTTTGAAATCGT 418
Query 548 CAAGAAAATCTTCAATAAAGTTTTGGAAAGAAATGATGCTGGAGAGCATTTTCCTATATA 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CAAGAAAATCTTCAATAAAGTTTTGGAAAGAAATGATGCTGGAGAGCATTTTCCTATATA 478
Query 608 CGCTATTTGCCTCGGATTTGAGCTCTTGACAATGATCATAAGCCAGAACAGAGACATTTT 667
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 479 CGCTATTTGCCTCGGATTTGAGCTCTTGACAATGATCATAAGTCAGAACAGAGACATTTT 538
Query 668 TGAAAAAATGGATGCAAGAAATTCTGCATCAAGTCTTCAGTTCGTTGAAAATGTTAATAT 727
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 539 TGAAAAAATGGATGCAAGAAATTCTGCATCAAGTCTTCAGTTCCTTGAAAATGTTAATAT 598
Query 728 CCAAGGAACCATATTCCAAAGATTTCCTCCAGAGCTGTTGAAAAAACTCGGTACAGATTG 787
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 599 CCAAGGAACCATTTTCCAAAGATTTCCTCCAGAACTGTTGAAAAAACTCGGTACAGATTG 658
Query 788 TCTGGTTATGCAGAATCATCGGTTTGGTATCTCACCACAAAGCTTTGAAGGAAATATTGC 847
| | ||||||||||| ||||||||||||||||||||| ||||||||||||| ||| ||||
Sbjct 659 TTTAGTTATGCAGAACCATCGGTTTGGTATCTCACCAGAAAGCTTTGAAGGCAATGTTGC 718
Query 848 TCTGTCTAATTTCTTTAAAATTGTCACAACATGCGTTGATGACAACGGCAAGGTTTATGT 907
|||||| | |||||||||||| ||||||||| |||||||| ||||| |||||||||||||
Sbjct 719 TCTGTCCAGTTTCTTTAAAATCGTCACAACAAGCGTTGATAACAACAGCAAGGTTTATGT 778
Query 908 TTCAACAGTTCAATCAACAAAATATCCAGTGACCGGCTTCCAGTGGCATCCTGAGAAAAA 967
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 779 TTCAACAGTTCAATCAAAAAAATATCCAGTGACCGGCTTCCAGTGGCATCCCGAGAAAAA 838
Query 968 TGCATTCGAGTGGGGATCATCTAAAATTCCACACTCTGAGGACGCGATCCAGGTGACTCA 1027
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 839 TGCATTCGAGTGGGGATCATCCAAAATTCCACACTCTGAGGACGCGATCCAGGTGACTCA 898
Query 1028 GCACGCCGCAAATCATCTAGTCAGTGAAGCTAGGAAGTCACTGAACAGACCAGAGTCTAA 1087
|||||| ||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 899 GCACGCAGCAAATCATCTAGTCAGTGAAGCTAGGAAGTCACTGAACAGGCCGGACTCTAA 958
Query 1088 GAAAGTGCTGAGCAATCTCATTTACAACTATAAGCCTACTTACTGTGGATACGCAGGGAT 1147
|||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 959 GAAAGTGCTGAGCAATCTCATTTATAACTACAAGCCTACCTACTGTGGATACGCAGGGAA 1018
Query 1148 TGGTTACGACGAGGTTTACATCTTCACACAACAACGATCCCTTCTCTAATAACTAT-AAC 1206
||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||
Sbjct 1019 GGGTTACGACGAGGTTTACATCTTCACACAGCAACGATCCCTTCTCTAATAACT-TCAAC 1077
Query 1207 CTCTCCTGTG 1216
||||| ||||
Sbjct 1078 CTCTCGTGTG 1087
> Ahg316768 jgi|Araly1|316768|fgenesh1_pm.C_scaffold_2001801
Length=1032
Score = 1591 bits (861), Expect = 0.0
Identities = 962/1011 (95%), Gaps = 5/1011 (0%)
Strand=Plus/Plus
Query 172 TACCGTTGGTAGCTCTATCTCT-CTTTAAGGATAGCATCATAATGGCCAAGGCTGCGACG 230
||||||||||| |||||||| | ||||||||||||||||||||| |||| ||||| ||
Sbjct 23 TACCGTTGGTA---CTATCTCTGC-TTAAGGATAGCATCATAATGGGCAAGTCTGCGGCG 78
Query 231 ATTCTCCTCCCTAGTCAAACCGGATTTGATATTTCTCGGAGTCCGGTATGCTCTGCTCCG 290
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 79 ATTCTCCTCCCTAGTCAAACCGGATTTGATATTTCTCGGAGTCCGGTATGCTCCGCGCCG 138
Query 291 GATCCGAACCTAAATTACAGACCGGTTATTGGTATTCTGAGCCATCCTGGCGACGGTGCG 350
||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||||||
Sbjct 139 GATCCGAACCTCAATTACAGGCCGGTTATTGGGATTCTGAGCCATCCTGGTGACGGTGCG 198
Query 351 TCAGGTCGTTTGAGCAATGCTACAGACGCGTCCTCCATTGCGGCTTCGTATGTGAAATTA 410
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 199 TCGGGTCGTTTGAGCAATGCTACAGACGCGTCGTCCATTGCGGCTTCGTATGTGAAATTA 258
Query 411 GCTGAGTCTGGTGGAGCACGTGTGATCCCACTCATCTTTAACGAGCCTGAAGAAATTCTC 470
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 259 GCTGAGTCTGGTGGAGCACGTGTGATCCCACTCATCTATAACGATCCTGAAGAAATTCTC 318
Query 471 TTTCAGAAGCTAGAATTGGTCAACGGTGTGATACTAACTGGTGGTTGGGCTAAAGAAGGA 530
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 319 TTTCAGAAGCTAGAATTGGTCAACGGTGTGATACTCACTGGTGGTTGGGCTAAAGAAGGA 378
Query 531 TTGTATTTTGAAATCGTCAAGAAAATCTTCAATAAAGTTTTGGAAAGAAATGATGCTGGA 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 TTGTATTTTGAAATCGTCAAGAAAATCTTCAATAAAGTTTTGGAAAGAAATGATGCTGGA 438
Query 591 GAGCATTTTCCTATATACGCTATTTGCCTCGGATTTGAGCTCTTGACAATGATCATAAGC 650
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 GAGCATTTTCCTATATACGCTATTTGCCTCGGATTTGAGCTCTTGACAATGATCATAAGT 498
Query 651 CAGAACAGAGACATTTTTGAAAAAATGGATGCAAGAAATTCTGCATCAAGTCTTCAGTTC 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 CAGAACAGAGACATTTTTGAAAAAATGGATGCAAGAAATTCTGCATCAAGTCTTCAGTTC 558
Query 711 GTTGAAAATGTTAATATCCAAGGAACCATATTCCAAAGATTTCCTCCAGAGCTGTTGAAA 770
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 559 CTTGAAAATGTTAATATCCAAGGAACCATTTTCCAAAGATTTCCTCCAGAACTGTTGAAA 618
Query 771 AAACTCGGTACAGATTGTCTGGTTATGCAGAATCATCGGTTTGGTATCTCACCACAAAGC 830
|||||||||||||||||| | ||||||||||| ||||||||||||||||||||| |||||
Sbjct 619 AAACTCGGTACAGATTGTTTAGTTATGCAGAACCATCGGTTTGGTATCTCACCAGAAAGC 678
Query 831 TTTGAAGGAAATATTGCTCTGTCTAATTTCTTTAAAATTGTCACAACATGCGTTGATGAC 890
|||||||| ||| |||||||||| | |||||||||||| |||||||||||||||||| ||
Sbjct 679 TTTGAAGGCAATGTTGCTCTGTCCAGTTTCTTTAAAATCGTCACAACATGCGTTGATAAC 738
Query 891 AACGGCAAGGTTTATGTTTCAACAGTTCAATCAACAAAATATCCAGTGACCGGCTTCCAG 950
||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 739 AACAACAAGGTTTATGTTTCAACAGTTCAATCAAAAAAATATCCAGTGACCGGCTTCCAG 798
Query 951 TGGCATCCTGAGAAAAATGCATTCGAGTGGGGATCATCTAAAATTCCACACTCTGAGGAC 1010
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 799 TGGCATCCCGAGAAAAATGCATTCGAGTGGGGATCATCCAAAATTCCACACTCTGAGGAC 858
Query 1011 GCGATCCAGGTGACTCAGCACGCCGCAAATCATCTAGTCAGTGAAGCTAGGAAGTCACTG 1070
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 859 GCGATCCAGGTGACTCAGCACGCAGCAAATCATCTAGTCAGTGAAGCTAGGAAGTCACTG 918
Query 1071 AACAGACCAGAGTCTAAGAAAGTGCTGAGCAATCTCATTTACAACTATAAGCCTACTTAC 1130
||||| || || ||||||||||||||||| |||||||||| | ||| |||||||| |||
Sbjct 919 AACAGGCCGGACTCTAAGAAAGTGCTGAGTTATCTCATTTATAGCTACAAGCCTACCTAC 978
Query 1131 TGTGGATACGCAGGGATTGGTTACGACGAGGTTTACATCTTCACACAACAA 1181
|||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 979 TGTGGATACGCAGGGAATGGTTACGACGAGGTTTACATCTTCACACAACAA 1029
> Ahg477030 jgi|Araly1|477030|fgenesh2_kg.2__2160__AT1G78660.2
Length=1205
Score = 905 bits (490), Expect = 0.0
Identities = 888/1075 (83%), Gaps = 48/1075 (4%)
Strand=Plus/Plus
Query 134 TCT-TTCCTCTTCCTCTGAGATGTGGAGCTACGTTTGGTTACCGTTGGTAGCTCTATCTC 192
||| ||| |||| ||| ||||||||| | |||||||| |||||||| || ||| | |
Sbjct 18 TCTCTTCTTCTTGCTCGGAGATGTGGCGTTACGTTTGTTTACCGTTTTTA-TTCT-T-GC 74
Query 193 TCTTTAAG-GATAGCATCATAATGGCCAAGGCTGCGACGAT-TCTCCTCCCTAGTCAAAC 250
| || || |||| || | ||||| | | | ||||||| | | |||||||||||| |
Sbjct 75 T-TTGGAGCGATA-CA-GGT-CTGGCCGA-G-T-CGACGATAT-TGCTCCCTAGTCAAGC 126
Query 251 CGGATTTGATATTTCTCGGAGTCCGGTATGCT-CTGCTCCGGATCCGAACCTAAATTACA 309
||||||||| ||| |||||||||| |||| || | |||||||||||||| || ||||
Sbjct 127 CGGATTTGACGGTTCAGGGAGTCCGGTTTGCTCCT-CGCCGGATCCGAACCTGAACTACA 185
Query 310 GACCGGTTATTGGTATTCTGAGCCATCCTGGCGACGGTGCGTCAGGTCGTTTGAGCAATG 369
| ||||| || ||||| ||||| || ||||| || || ||||| ||||| |||| |||||
Sbjct 186 GGCCGGTCATCGGTATCCTGAGTCACCCTGGAGATGGCGCGTCCGGTCGGTTGACCAATG 245
Query 370 CTACAGACGCGT-C-C-TCCATTGCGGCTTCGTATGTGAAA-TTAGCTGAGTCTGGTGGA 425
||| || | | | | | ||| |||||||| ||||| ||| || |||||| | ||||||
Sbjct 246 ATAC-GA-G-TTCCACGTACATCGCGGCTTCCTATGT-AAAGTTCGCTGAGGCAGGTGGA 301
Query 426 GCACGTGTGATCCCACTCATCTTTAACGAGCCTGAAGAAATTCTCTTTCAGAAGCTAGAA 485
|| ||||| ||||||||||||| ||||| ||||||||| | ||||||||||||||||||
Sbjct 302 GCTCGTGTTATCCCACTCATCTACAACGAACCTGAAGAACTCCTCTTTCAGAAGCTAGAA 361
Query 486 TTGGTCAACGGTGTGATACTAACTGGTGGTTGGGCT-AAAGA-AGGATTGTATTTTGAAA 543
||||||||||||||||| | ||||||||||||||| ||| | | || | ||||| || |
Sbjct 362 CTGGTCAACGGTGTGATATTCACTGGTGGTTGGGCTAAAAAATATGA-T-TATTTCGAGA 419
Query 544 TCGTCAAGAAAATCTTCAATAAAGTTTTGGAAAGAAATGATGCTGGAGAGCATTTTCCTA 603
||||||| ||||||||||||| || |||||| |||||||||||||||||||||||||| |
Sbjct 420 TCGTCAAAAAAATCTTCAATAGAGCTTTGGAGAGAAATGATGCTGGAGAGCATTTTCC-A 478
Query 604 -TATA-CGCTATTTGCCTCGGATTTGAGCTCT-TGACAATGATCATAAGCCAGAACAGAG 660
| || || ||||| |||||||| ||||| | || |||| ||||| || ||||||||||
Sbjct 479 GTTTATGGC-ATTTGTCTCGGATTCGAGCT-TATGTCAATTATCATCAGTCAGAACAGAG 536
Query 661 ACATTTTTGAAAAAATGGATGCAAGA-AATTCTGCATCAAGTCTTCAGTTCGTTGAAAAT 719
||||| |||||| | | ||||| ||| || |||||||| || ||||| ||||| |||
Sbjct 537 ACATTCTTGAAAGATTTGATGC-AGAGGATAATGCATCAACCCTACAGTTTGTTGATAAT 595
Query 720 GTTAATATCCAAGGAACCA-TATTCCAAAGATTTCCTCCAGAGCTGTTGAAAAAACTCGG 778
||||||||| | |||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct 596 GTTAATATCGATGGAA-CATTATTCCAAAGATTTCCTCCAGAGCTGTTGAAAAAACTCAG 654
Query 779 TACAGATTGTCTGGTTATGCAGAATCATCG-GTTTGGTATCTCACCA-CAAAGCTTTGAA 836
|||||||||| ||||||||||||| || | || ||||||| ||||| |||| |||| ||
Sbjct 655 TACAGATTGTTTGGTTATGCAGAAACA-CAAGTATGGTATCACACCAGCAAA-CTTTCAA 712
Query 837 GGAAATATTGCTCTGTCTAATTTCTTTAAAATTGTCACAACATGCGTTGATGACAACGGC 896
|| ||| |||| |||||| ||||||| |||| ||||||| ||| | ||||| ||| ||
Sbjct 713 GGCAATCCTGCTTTGTCTAGTTTCTTTGAAATCCTCACAACCTGCATAGATGAAAACAGC 772
Query 897 AAGGTTTATGTTTCAACAGTTCAATCAACAAA-ATATCCAGTGACCGGCTTCCAGTGGCA 955
||| |||||||||||| ||| || ||| | | ||| ||| | || ||||||||||||||
Sbjct 773 AAGACTTATGTTTCAACTGTTAAAGCAA-AGAGATACCCAATAACTGGCTTCCAGTGGCA 831
Query 956 TCCTGAGAAAAATGCATTCGAGTGGGGATCATCTAAAATTCCACACTCTGAGGACGCGAT 1015
|||||||||||||||||| || ||||||||||| ||||||||||||||||| || ||
Sbjct 832 TCCTGAGAAAAATGCATTTGAATGGGGATCATCCGCGATTCCACACTCTGAGGATGCAAT 891
Query 1016 CCAGGTGACTCAGCACGCCGCAAATCATCTAGTCAGTGAAGCTAGGAAGTCACTGAACAG 1075
||||||||| ||||| || || | | || |||||||||||||||||||||||||||||||
Sbjct 892 CCAGGTGACACAGCATGCTGCTAGTTATTTAGTCAGTGAAGCTAGGAAGTCACTGAACAG 951
Query 1076 ACCAG-AGTCTAAGAAAGTGCTGAGCAATCTCATTTACAACTATAAGCCTACTTACTGTG 1134
|||| | || ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 952 ACCACCA-TCAAAGAAAGTGCTAAGCAATCTCATATACAACTATAAGCCTACTTACTGTG 1010
Query 1135 GATACGCAGGGATTGGTTACGACGAGGTTTACATCTTCACACAAC-AACGATCCC 1188
|||||||||||| |||||||||||||||||||| |||||||||| || ||||||
Sbjct 1011 GATACGCAGGGAGGGGTTACGACGAGGTTTACATTTTCACACAACCAA-GATCCC 1064
> Ahg927282 jgi|Araly1|927282|scaffold_202843.1
Length=1093
Score = 712 bits (385), Expect = 0.0
Identities = 758/932 (81%), Gaps = 50/932 (5%)
Strand=Plus/Plus
Query 276 GTATGCT-CTGCTCCGGATCCGAACCTAAATTAC-AGACCGGTTATTGGTATTCTGAGCC 333
||||||| || | |||||||||||||| || ||| || ||||| ||||| ||||||| ||
Sbjct 153 GTATGCTCCT-CCCCGGATCCGAACCTCAACTACAAG-CCGGTCATTGGGATTCTGACCC 210
Query 334 ATCCTGGCG-A---CG--GTG-CGTCAGGTCG----T-T-TGAGCAATG-CTAC-AGACG 378
| ||||||| | || | | || | ||||| | | ||||| | | |||| ||||
Sbjct 211 ACCCTGGCGAAGGTCGATGGGACG-CTGGTCGTCACTCTCTGAGCTACGCCTACTCGACG 269
Query 379 --C--GTCCTCCATTGCGGCTTCGTATGTGAAATTAGCTGAGTCTGGTGGAGCACGTGTG 434
| || | ||| || |||||||||||||| ||||||||| |||||||||| ||||||
Sbjct 270 AACATATCGTACATCGCAGCTTCGTATGTGAAGTTAGCTGAGACTGGTGGAGCTCGTGTG 329
Query 435 ATCCCACTCATCTTTAACGAGCCTGAAGAAATTC-TCTTTCAGAAGCTAGAATTGGTCAA 493
|| || || |||| ||||||||||||| || || | ||||| ||||||||| |||| ||
Sbjct 330 ATTCCTCTTATCTACAACGAGCCTGAAG-AACTCTTGTTTCAAAAGCTAGAACTGGTGAA 388
Query 494 CGGTGTGATACTAACTGGTGGTTGGGCTAAAGA-AGGATTGTATTTTGAAATCGTCAAGA 552
||||||||| | |||||||||||||||||| | |||||| |||| || || || |||
Sbjct 389 TGGTGTGATATTCACTGGTGGTTGGGCTAAA-ACAGGATTATATTACGATATAGTGGAGA 447
Query 553 AAATCTTCAATAAAGTTTTGGA-AAGAAATGATGCTGGAGAGCATTTTCCTATATACGCT 611
|||||||||||||||||||||| ||| || ||||||||||| |||||||| | || ||
Sbjct 448 AAATCTTCAATAAAGTTTTGGAGAAG-AACGATGCTGGAGAACATTTTCCGGTGTATGCC 506
Query 612 ATTTGCCTCGGATTTGAGCTCTTGACAATGATCATAAGCCAGAACAGAGACATTTTTGAA 671
|| || || ||||| ||| | ||| ||||||||||||| ||||||||||||||| |||||
Sbjct 507 ATGTGTCTTGGATTCGAGATTTTGTCAATGATCATAAGTCAGAACAGAGACATTCTTGAA 566
Query 672 AAAATGGA-TGCAAG-AAATTCTGCATCAAGTCTTCAGTTCGTTGAAAATGTTAATATCC 729
| | || | | || ||| | |||||||||||| ||||| |||||||||||||||||
Sbjct 567 AGGTTTGACT-C-AGTAAACTATGCATCAAGTCTCCAGTTTTTTGAAAATGTTAATATCG 624
Query 730 AAGGAACCATATTCCAAAGATTTCCTCCAGAGCTGTTGAAAAAACTCGGTACAGATTGTC 789
||| ||| | |||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 625 AAGCTACCGTGTTCCAAAGATTTCCTCCAGAGCTGTTGAAAAAACTCAGTACAGACTGTT 684
Query 790 TGGTTATGCAGAATCATCGGTTT-GGTATCTCACCACA-AAGCTTTGAAGGAAATA-TTG 846
||||||||||||| || | ||| |||||||||||| | || ||| |||| ||| ||
Sbjct 685 TGGTTATGCAGAACCA-CTATTTTGGTATCTCACCAGACAA-CTTCCAAGGCAATCCTT- 741
Query 847 CTCTGTCTAATTTCTTTAAAATTGTCACAAC-ATGCGTTGATGACA-ACGGCAAGG-TTT 903
||||||||| |||||| || || ||||||| | ||| |||| | | || ||||| |||
Sbjct 742 CTCTGTCTAGTTTCTTCAATATCCTCACAACCA-GCGCTGATAA-AGACAGCAAGACTTT 799
Query 904 ATGTTTCAAC-AGTTCAATCAACAAA-ATATCCAGTGACCGGCTTCCAGTGGCATCCTGA 961
||||||||| | ||| ||||| || ||| || ||||||| ||||||||||||||| ||
Sbjct 800 -TGTTTCAACTA-TTCGATCAA-AAGGATACCCTGTGACCGCCTTCCAGTGGCATCCAGA 856
Query 962 GAAAAATGCATTCGAGTGGGGATCATCTAAAATTCCACACTCTGAGGACGCGATCCAGGT 1021
||||||||||||||| ||||||||||| |||| ||||||||||||||||| || |||||
Sbjct 857 GAAAAATGCATTCGAATGGGGATCATCCGAAATCCCACACTCTGAGGACGCAATTCAGGT 916
Query 1022 GACTCAGCACGCCGCAAATCATCTAGTCAGTGAAGCTAGGAAGTCACTGAACAGACCAGA 1081
||||||| | || |||||| ||||||||||||||||||| |||||| |||||||||||
Sbjct 917 GACTCAGTATGCTGCAAATTATCTAGTCAGTGAAGCTAGAAAGTCAATGAACAGACCATC 976
Query 1082 GTCTAAGAAAGTGCTGAGCAATCTCATTTACAACTATAAGCCTACTTACTGTGGATACGC 1141
||| |||||||||||||||||||||| ||||| || |||||||| |||| ||||||
Sbjct 977 TTCTGAGAAAGTGCTGAGCAATCTCATCTACAATTACAAGCCTACATACTCCGGATACAA 1036
Query 1142 AGGGATTGGTTACGACGAGGTTTACATCTTCA 1173
||||| ||| |||||||||||||||| ||||
Sbjct 1037 AGGGAGCGGTGACGACGAGGTTTACATTTTCA 1068
> Ahg951931 jgi|Araly1|951931|scaffold_26200002.1
Length=1093
Score = 689 bits (373), Expect = 0.0
Identities = 754/932 (81%), Gaps = 50/932 (5%)
Strand=Plus/Plus
Query 276 GTATGCT-CTGCTCCGGATCCGAACCTAAATTAC-AGACCGGTTATTGGTATTCTGAGCC 333
||||||| || | |||||||||||||| || ||| || ||||| ||||| ||||||| ||
Sbjct 153 GTATGCTCCT-CCCCGGATCCGAACCTCAACTACAAG-CCGGTCATTGGGATTCTGACCC 210
Query 334 ATCCTGGCG-A---CG--GTG-CGTCAGGTCG----T-T-TGAGCAATG-CTAC-AGACG 378
| ||||||| | || | | || | ||||| | | ||||| | | |||| ||||
Sbjct 211 ACCCTGGCGAAGGTCGATGGGACG-CTGGTCGTCACTCTCTGAGCTACGCCTACTCGACG 269
Query 379 --C--GTCCTCCATTGCGGCTTCGTATGTGAAATTAGCTGAGTCTGGTGGAGCACGTGTG 434
| || | ||| || |||||||||||||| ||||||||| |||||||||| ||||||
Sbjct 270 AACATATCGTACATCGCAGCTTCGTATGTGAAGTTAGCTGAGACTGGTGGAGCTCGTGTG 329
Query 435 ATCCCACTCATCTTTAACGAGCCTGAAGAAATTC-TCTTTCAGAAGCTAGAATTGGTCAA 493
|| || || |||| ||||||||||||| || || | ||||| ||||||||| |||| ||
Sbjct 330 ATTCCTCTTATCTACAACGAGCCTGAAG-AACTCTTGTTTCAAAAGCTAGAACTGGTGAA 388
Query 494 CGGTGTGATACTAACTGGTGGTTGGGCTAAAGA-AGGATTGTATTTTGAAATCGTCAAGA 552
||||||||| | |||||||||||||||||| | |||||| |||| || || || |||
Sbjct 389 TGGTGTGATATTCACTGGTGGTTGGGCTAAA-ACAGGATTATATTACGATATAGTGGAGA 447
Query 553 AAATCTTCAATAAAGTTTTGGA-AAGAAATGATGCTGGAGAGCATTTTCCTATATACGCT 611
|||||||||||||||||||||| ||| || ||||||||||| |||||||| | || ||
Sbjct 448 AAATCTTCAATAAAGTTTTGGAGAAG-AACGATGCTGGAGAACATTTTCCGGTGTATGCC 506
Query 612 ATTTGCCTCGGATTTGAGCTCTTGACAATGATCATAAGCCAGAACAGAGACATTTTTGAA 671
|| || || ||||| ||| | ||| ||||||||||||| ||||||||||||||| |||||
Sbjct 507 ATGTGTCTTGGATTCGAGATTTTGTCAATGATCATAAGTCAGAACAGAGACATTCTTGAA 566
Query 672 AAAATGGA-TGCAAG-AAATTCTGCATCAAGTCTTCAGTTCGTTGAAAATGTTAATATCC 729
| | | | | || ||| | |||||||||||| ||||| ||||||||||||||||
Sbjct 567 AGGTTTAACT-C-AGTAAACTATGCATCAAGTCTCCAGTTTTTTGAAAATGTTAATATTG 624
Query 730 AAGGAACCATATTCCAAAGATTTCCTCCAGAGCTGTTGAAAAAACTCGGTACAGATTGTC 789
||| |||| | |||||||||||||||||||||||||||||||| || ||||||| |||
Sbjct 625 AAGCAACCGTGTTCCAAAGATTTCCTCCAGAGCTGTTGAAAAAGCTTAGTACAGACTGTT 684
Query 790 TGGTTATGCAGAATCATCGGTTT-GGTATCTCACCACA-AAGCTTTGAAGGAAATA-TTG 846
|||||||||| || || | ||| |||||||||||| | || |||| |||| || ||
Sbjct 685 TGGTTATGCAAAACCA-CTATTTTGGTATCTCACCAGACAA-CTTTCAAGGCAAGCCTT- 741
Query 847 CTCTGTCTAATTTCTTTAAAATTGTCACAAC-ATGCGTTGATGACA-ACGGCAAGG-TTT 903
||||||||| |||||| || || ||||||| | ||| |||| | | || ||||| |||
Sbjct 742 CTCTGTCTAGTTTCTTCAATATCCTCACAACCA-GCGCTGATAA-AGACAGCAAGACTTT 799
Query 904 ATGTTTCAAC-AGTTCAATCAACAAA-ATATCCAGTGACCGGCTTCCAGTGGCATCCTGA 961
||||||||| | ||| ||||| || ||| || ||||||| ||||||||||||||| ||
Sbjct 800 -TGTTTCAACTA-TTCGATCAA-AAGGATACCCTGTGACCGCCTTCCAGTGGCATCCAGA 856
Query 962 GAAAAATGCATTCGAGTGGGGATCATCTAAAATTCCACACTCTGAGGACGCGATCCAGGT 1021
||||||||||||||| ||||||||||| |||| ||||||||||||||||| || |||||
Sbjct 857 GAAAAATGCATTCGAATGGGGATCATCCGAAATCCCACACTCTGAGGACGCAATTCAGGT 916
Query 1022 GACTCAGCACGCCGCAAATCATCTAGTCAGTGAAGCTAGGAAGTCACTGAACAGACCAGA 1081
||||||| | || |||||| ||||||||||||||||||| |||||| |||||||||||
Sbjct 917 GACTCAGTATGCTGCAAATTATCTAGTCAGTGAAGCTAGAAAGTCAATGAACAGACCATC 976
Query 1082 GTCTAAGAAAGTGCTGAGCAATCTCATTTACAACTATAAGCCTACTTACTGTGGATACGC 1141
||| |||||||||||||||||||||| ||||| || |||||||| |||| ||||||
Sbjct 977 TTCTGAGAAAGTGCTGAGCAATCTCATCTACAATTACAAGCCTACATACTCCGGATACAA 1036
Query 1142 AGGGATTGGTTACGACGAGGTTTACATCTTCA 1173
||||| ||| |||||||||||||||| ||||
Sbjct 1037 AGGGAGCGGTGACGACGAGGTTTACATTTTCA 1068
> Ahg359459 jgi|Araly1|359459|fgenesh1_pg.C_scaffold_262000001
Length=633
Score = 623 bits (337), Expect = 1e-177
Identities = 539/635 (85%), Gaps = 20/635 (3%)
Strand=Plus/Plus
Query 564 AAAGTTTTGGAAAGAAATGATGCTGGAGAGCATTTTCCTA-TATA-CGCTATTTGCCTCG 621
|||| |||||| |||||||||||||||||||||||||| | | || || ||||| ||||
Sbjct 1 AAAGCTTTGGAGAGAAATGATGCTGGAGAGCATTTTCC-AGTTTATGGC-ATTTGTCTCG 58
Query 622 GATTTGAGCTCT-TGACAATGATCATAAGCCAGAACAGAGACATTTTTGAAAAAATGGAT 680
|||| ||||| | || |||| ||||| || ||||||||||||||| |||||| | | |||
Sbjct 59 GATTCGAGCT-TATGTCAATTATCATCAGTCAGAACAGAGACATTCTTGAAAGATTTGAT 117
Query 681 GCAAGA-AATTCTGCATCAAGTCTTCAGTTCGTTGAAAATGTTAATATCCAAGGAACCA- 738
|| ||| || |||||||| || ||||| ||||| |||||||||||| | |||| ||
Sbjct 118 GC-AGAGGATAATGCATCAACCCTACAGTTTGTTGATAATGTTAATATCGATGGAA-CAT 175
Query 739 TATTCCAAAGATTTCCTCCAGAGCTGTTGAAAAAACTCGGTACAGATTGTCTGGTTATGC 798
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 176 TATTCCAAAGATTTCCTCCAGAGCTGTTGAAAAAACTCAGTACAGATTGTTTGGTTATGC 235
Query 799 AGAATCATCG-GTTTGGTATCTCACCA-CAAAGCTTTGAAGGAAATATTGCTCTGTCTAA 856
|||| || | || ||||||| ||||| |||| |||| |||| ||| |||| ||||||
Sbjct 236 AGAAACA-CAAGTATGGTATCACACCAGCAAA-CTTTCAAGGCAATCCTGCTTTGTCTAG 293
Query 857 TTTCTTTAAAATTGTCACAACATGCGTTGATGACAACGGCAAGGTTTATGTTTCAACAGT 916
||||||| |||| ||||||| ||| | ||||| ||| ||||| |||||||||||| ||
Sbjct 294 TTTCTTTGAAATCCTCACAACCTGCATAGATGAAAACAGCAAGACTTATGTTTCAACTGT 353
Query 917 TCAATCAACAAA-ATATCCAGTGACCGGCTTCCAGTGGCATCCTGAGAAAAATGCATTCG 975
| || ||| | | ||| ||| | || |||||||||||||||||||||||||||||||| |
Sbjct 354 TAAAGCAA-AGAGATACCCAATAACTGGCTTCCAGTGGCATCCTGAGAAAAATGCATTTG 412
Query 976 AGTGGGGATCATCTAAAATTCCACACTCTGAGGACGCGATCCAGGTGACTCAGCACGCCG 1035
| ||||||||||| ||||||||||||||||| || ||||||||||| ||||| || |
Sbjct 413 AATGGGGATCATCCGCGATTCCACACTCTGAGGATGCAATCCAGGTGACACAGCATGCTG 472
Query 1036 CAAATCATCTAGTCAGTGAAGCTAGGAAGTCACTGAACAGACCAG-AGTCTAAGAAAGTG 1094
| | | || ||||||||||||||||||||||||||||||||||| | || |||||||||
Sbjct 473 CTAGTTATTTAGTCAGTGAAGCTAGGAAGTCACTGAACAGACCACCA-TCAAAGAAAGTG 531
Query 1095 CTGAGCAATCTCATTTACAACTATAAGCCTACTTACTGTGGATACGCAGGGATTGGTTAC 1154
|| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 532 CTAAGCAATCTCATATACAACTATAAGCCTACTTACTGTGGATACGCAGGGAGGGGTTAC 591
Query 1155 GACGAGGTTTACATCTTCACACAAC-AACGATCCC 1188
|||||||||||||| |||||||||| || ||||||
Sbjct 592 GACGAGGTTTACATTTTCACACAACCAA-GATCCC 625
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53440613735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5