BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G78820.1 Length=1690 Score E Sequences producing significant alignments: (Bits) Value Ahg927296 jgi|Araly1|927296|scaffold_202857.1 2126 0.0 Ahg477046 jgi|Araly1|477046|fgenesh2_kg.2__2176__AT1G78830.1 1631 0.0 > Ahg927296 jgi|Araly1|927296|scaffold_202857.1 Length=1409 Score = 2126 bits (1151), Expect = 0.0 Identities = 1318/1400 (94%), Gaps = 6/1400 (0%) Strand=Plus/Plus Query 27 AAACATAAAGAACACAACCATGCTTAGGTTTGATTACTTACTAATCACGGCACTTGCCAT 86 |||| |||||| ||||| ||||||| ||||||||| |||| ||||||||||||| ||||| Sbjct 2 AAACGTAAAGAGCACAATCATGCTTCGGTTTGATTTCTTAGTAATCACGGCACTCGCCAT 61 Query 87 TTCAACTGTTTCGGTTGTCATGGCCCAAGTCCCTCCCGAGAAACAATTCAGAGTGCTCAA 146 ||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 62 TTCCACTGTTTCGGTGGTCATGGCCCAAGTCCCTCCCGAGAAACAATTCAGAGTCCTCAA 121 Query 147 CGAACCCGGCTACGCCCCATACATCACCGAGTACGACGCGAGTTACCGATTCCTCAACTC 206 ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 122 CGAACCCTCCTACGCCCCATACATAACCGAGTACGACGCGAGTTACCGATTCCTCAACTC 181 Query 207 ACCGAATCAGAATTTCTTCACAATTCCTTTCCAGCTCATGTTTTACAATACAACTCCTAG 266 |||||||||| | ||||||||| ||||||||||||||||||| |||||||| |||||||| Sbjct 182 ACCGAATCAGGACTTCTTCACATTTCCTTTCCAGCTCATGTTCTACAATACTACTCCTAG 241 Query 267 CGCCTACGTGTTAGCTCTCCGAGTCGGAACGAGGCGTGACATGAGTTTCACGCGTTGGAT 326 ||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct 242 CGCCTACGTTTTAGCTCTCCGAGTCGGATCCAGGCGTGACATGAGTTTCACGCGTTGGAT 301 Query 327 CTGGGACGCCAATCGCAACAACCCCGTCGGAGACAACTCCACACTCTCATTCGGCCGAAA 386 |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| || Sbjct 302 CTGGGACGCCAATCGCAACAACCCCGTCGGTGACAACTCCACACTCTCACTCGGCCGCAA 361 Query 387 CGGAAACCTTGTGCTCGCTGAGTTAAACGGCCAAGTCAAGTGGCAGACTAACACAGCCAA 446 ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 362 CGGCAACCTTGTGCTCGCTGAGTTAAACGGCCACGTCAAGTGGCAGACTAACACAGCCAA 421 Query 447 CAAAGGCGTCACCGGATTCCAAATCTTGCCCAATGGAAACATGGTGCTACACGACAAACA 506 |||||| |||||||||||| | ||||||||||| || ||||||||||||||||||||||| Sbjct 422 CAAAGGTGTCACCGGATTCGAGATCTTGCCCAACGGCAACATGGTGCTACACGACAAACA 481 Query 507 TGGAAAATTCGTTTGGCAGAGTTTCGATCATCCC-ACCGATACACTCCTCGTCGGCCAAT 565 |||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| Sbjct 482 TGGAAAATTCGTTTGGCAGAGTTTTGATCA-CCCAACCGATACACTCCTCGTCGGCCAAT 540 Query 566 CCCTAAAAGTTAACGGAGTTAACAAACTCGTTAGCCGTACATCTGATATGAACGGCTCCG 625 |||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||| Sbjct 541 CCCTAAAAGTTAACGGTGTTAACAAACTCGTTAGCCGGACATCTGCTATGAACGGCTCCG 600 Query 626 ATGGTCCGTACAGCATGGTGTTGGACAACAAAGGCTTAACCATGTACGTTAACAAAACCG 685 |||||||||||||||||||| |||| |||||||| ||||||||||||||||||| ||||| Sbjct 601 ATGGTCCGTACAGCATGGTGCTGGAAAACAAAGGTTTAACCATGTACGTTAACAGAACCG 660 Query 686 GTACGCCGTTAGTTTACGGGGGATGGACGGATCACGACTTCCGCGGTACCGTCACGTTCG 745 ||| ||||||||||||||| |||||| |||||||||| |||||||| ||||||||||||| Sbjct 661 GTAAGCCGTTAGTTTACGGCGGATGGCCGGATCACGATTTCCGCGGCACCGTCACGTTCG 720 Query 746 CCGTTACAAGAGAGTTCGATAATTTAACGGAGCCGTCAGCTTACGAGCTTCTCTTAGAAC 805 | ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| Sbjct 721 CTGTTACAAGAGAGTTCGACAATTTAACGGAGCCGTCAGCTTACGAGCTTCTCCTAGAAC 780 Query 806 CCGCACCACAACCCGCTACGAACCCGGGTAATAACCGCCGGTTACTCCAAGTTAGACCAA 865 |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 781 CCGCACCACAACCCGCTACGAATCCGGGTAATAACCGCCGGTTACTCCAAGTCCGACCAA 840 Query 866 TCGGAAGCGGAGGAGGAACTTTAAACT-TAAACAAAATCAACTACAATGGAACGATATCG 924 ||||||||||||||||||||||||| | | ||||||||||| ||||| |||||||| ||| Sbjct 841 TCGGAAGCGGAGGAGGAACTTTAAA-TCTGAACAAAATCAATTACAACGGAACGATTTCG 899 Query 925 TATCTGAGACTTGGATCCGACGGTAGCCTCAAGGCCTT-CTCGTATTTCCCTGCCGCGAC 983 ||||| ||||| ||||| ||||| || ||||||| ||| |||||||||||| |||||||| Sbjct 900 TATCTCAGACTCGGATCTGACGGGAGTCTCAAGG-CTTACTCGTATTTCCCAGCCGCGAC 958 Query 984 GTATCTCGAATGGGAAGAGACTTTCGCTTTCTTCTCCAATTACTTCGTCCGTCAATGCGG 1043 |||||||||||||||||||| |||| | |||||||||| ||||||||||||||||||||| Sbjct 959 GTATCTCGAATGGGAAGAGAGTTTCTCATTCTTCTCCACTTACTTCGTCCGTCAATGCGG 1018 Query 1044 TTTGCCGACGTTTTGCGGCGATTACGGTTACTGCGATCGAGGAATGTGCGTCGGGTGCCC 1103 |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| Sbjct 1019 TTTGCCGACGTTTTGCGGCGATTACGGTTACTGCAATCGAGGAATGTGCGTCGGATGCCC 1078 Query 1104 TACACCGAAAGGTCTGTTAGCTTGGAGTGATAAATGCGCTCCACCTAAAACGACGCAGTT 1163 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1079 TACACCGAAAGGTCTGTTAGCTTGGAGTGATAAATGCGCACCACCTAAAACGACGCAGTT 1138 Query 1164 TTGCAGCGGAGGCAAGGGTAAAGCTGTCAATTATTACAAGATAGTCGGTGTTGAGCATTT 1223 ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1139 TTGTAGCGGAGGCAAGGGTAAAACTGTCAATTATTACAAGATAGTCGGTGTTGAGCATTT 1198 Query 1224 TACTGGGCCGTATGTTAATGATGGACAAGGCCCAACTTCTGTGAACGATTGCAAGGCTAA 1283 ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1199 TACTGGGCCTTATGTTAATGGTGGACAAGGCCCAACTTCTGTGAACGATTGCAAGGCTAA 1258 Query 1284 GTGCGATCGTGATTGCAAGTGTTTGGGTTACTTCTACAAGGAGAAGGACAAGAAATGTTT 1343 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1259 ATGCGATCGTGATTGCAAGTGTTTGGGTTACTTCTACAAGGAGAAGGACAAGAAATGTTT 1318 Query 1344 GCTTGCTCCTCTTCTTGGTACACTTATCAAAGATGCCAACACTTCTTCCGTTGCTTACAT 1403 ||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||| Sbjct 1319 GCTTGCTCCTCTTCTTGGTACACTTATTAAAGACGCCAACACTTCTTCCATTGCTTACAT 1378 Query 1404 CAAATATTAGCGAGATTTAT 1423 |||||||||||||| ||||| Sbjct 1379 CAAATATTAGCGAGTTTTAT 1398 > Ahg477046 jgi|Araly1|477046|fgenesh2_kg.2__2176__AT1G78830.1 Length=1515 Score = 1631 bits (883), Expect = 0.0 Identities = 1245/1416 (88%), Gaps = 39/1416 (3%) Strand=Plus/Plus Query 76 GCACTTGCCATTTCAACTGTTTCGGTTGTCATGGCCCAAGTCCCTCCCGAGAAACAATTC 135 |||||||||||| | |||||||| || || || || ||||||||||| |||||||||||| Sbjct 73 GCACTTGCCATTGCCACTGTTTCAGTGGTTATAGCTCAAGTCCCTCCAGAGAAACAATTC 132 Query 136 AGAGTGCTCAACGAACCCGGCTACGCCCCATACATCACCGAGTACGACGCGAGTTACCGA 195 ||||| ||||||||| || | || | ||||||||||||||||||||| |||||| | Sbjct 133 AGAGTCCTCAACGAAGGCGAATTCGGTCAATACATCACCGAGTACGACGCAAGTTACAGG 192 Query 196 TTCCTC-AACTCACCGAATCAGAATTTCTTCACAAT-TCCTTTCCAGCTCATGTTTTACA 253 ||| || || ||| | || |||| |||||||| || || ||||||||| ||||||||| Sbjct 193 TTCATCGAA-TCATCAAACCAGAGCTTCTTCAC-ATCACCATTCCAGCTCTTGTTTTACA 250 Query 254 ATACAACTCCTAGCGCCTACGTGTTAGCTCTCCGAGTCGGAAC-GAGGCGTGACATGAGT 312 | || || |||||||||||||| |||| |||||||||||| || ||||||||| |||| Sbjct 251 ACACTACCCCTAGCGCCTACGTCTTAGGTCTCCGAGTCGG-ACTCAGGCGTGAC--GAGT 307 Query 313 -T-TCACGCGTTGGATCTGGGACGCCAATCGCAACAACCCCGTCGGAGACAACTCCACAC 370 | || ||||||||| |||||||| ||||||||||| ||||||||||| ||| | |||| Sbjct 308 CTACCATGCGTTGGATATGGGACGCAAATCGCAACAATCCCGTCGGAGAAAACGCTACAC 367 Query 371 TCTCATTCGGCCGAAACGGAAACCTTGTGCTCGCTG-AGTTAAACGGCCAAGTCAAGTGG 429 ||||| ||||||| ||||| ||||| || ||||||| || | |||| | |||||||||| Sbjct 368 TCTCACTCGGCCGTAACGGCAACCTCGTCCTCGCTGAAGCT-GACGGACGAGTCAAGTGG 426 Query 430 CAGACTAACACAGCCAACAAAGGCGTCACCGGATTCCAAATCTTGCCCAATGGAAACATG 489 |||||||||||||| ||||||||||||||||||||||||||||| ||||| || |||||| Sbjct 427 CAGACTAACACAGCTAACAAAGGCGTCACCGGATTCCAAATCTTACCCAACGGCAACATG 486 Query 490 GTGCTACACGACAAACATGGAAAATTCGTTTGGCAGAGTTTCGATCATCCCACCGATACA 549 || |||||||||||| | || |||||||||||||||||||| ||||| |||||||||||| Sbjct 487 GTCCTACACGACAAAAACGGCAAATTCGTTTGGCAGAGTTTTGATCACCCCACCGATACA 546 Query 550 CTCCTCGTCGGCCAATCCCTAAAAGTTAACGGAGTTAACAAACTCGTTAGCCGTACATCT 609 |||||| |||||| || ||||||||||||| |||||||||||||||||||||||||| Sbjct 547 CTCCTCAACGGCCAGTCGTTAAAAGTTAACGGCGTTAACAAACTCGTTAGCCGTACATCC 606 Query 610 GATATGAACGGCTCCGATGGTCCGTACAGCATGGTGTTGGACAACAAAGGCTTAACCATG 669 ||| | |||||||| ||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 607 GATTTAAACGGCTCAGATGGTCCGTACAGCATAGTGTTGGACAACAAAGGTTTAACCATG 666 Query 670 TACGTTAACAAAACCGGTACGCCGTTAGTTTACGGGGGATGGACGGATCACGACTTCCGC 729 ||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||| Sbjct 667 TACGTTAACAAAACCGGTACGCCGTTAGTTTACGGCGGATGGCCGGATCACGATTTCCGC 726 Query 730 GGTACCGTCACGTTCGCCGTTACAAGAGAGTTCGATAATTTAACGGAGCCGTCAGCTTAC 789 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 727 GGCACCGTAACGTTCGCCGTTACAAGAGAGTTCGATAATTTAACGGAGCCGTCAGCTTAC 786 Query 790 GAGCTTCTCTTAGAACCCGCACCACAACCCGCTACGAACCCGGGTAATAACCGCCGGTTA 849 ||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 787 GAGCTTCTCCTAGAACCCGCACCACAACCCGCTACAAATCCGGGTAATAACCGCCGGTTA 846 Query 850 CTCCAAGTTAGACCAATCGGAAGCGGAGGAGGAACTTTAAA-CTTAAACAAAATCAACTA 908 ||||||||||||||||||||||||||||||||||||||||| || || ||||||||| || Sbjct 847 CTCCAAGTTAGACCAATCGGAAGCGGAGGAGGAACTTTAAATCTGAA-CAAAATCAATTA 905 Query 909 CAATGGAACGATATCGTATCTGAGACTTGGATCCGACGGTAGCCTCAAGGCCTT-CTCGT 967 ||| |||||||| |||||||| ||||| ||||| ||||| || || ||||| || ||||| Sbjct 906 CAACGGAACGATTTCGTATCTCAGACTCGGATCTGACGGGAGTCTTAAGGC-TTACTCGT 964 Query 968 ATTTCCCTGCC-GCGACGTATCTCGAATGGGAAGAGACTTTCGCTTTCTTCTCCAATTAC 1026 ||||||| || || ||||||||| |||||||||||| |||| | |||||||||| |||| Sbjct 965 ATTTCCCA-CCAGCTACGTATCTCAAATGGGAAGAGAGTTTCTCATTCTTCTCCACTTAC 1023 Query 1027 TTCGTCCGTCAATGCGGTTTGCCGACGTTTTGCGGCGATTACGGTTACTGCGATCGAGGA 1086 |||||||||||||| || || ||| |||||||||||||||||||||||||||||||||| Sbjct 1024 TTCGTCCGTCAATGTGGCTTACCGTCGTTTTGCGGCGATTACGGTTACTGCGATCGAGGG 1083 Query 1087 ATGTGCGTCGGGTGCCCTACACCGAAAGG-TCTGTTAGCTTGGAGTGATAAATGCGCTCC 1145 |||||| ||| ||| |||||||| ||||| | | | | ||||||||||||||||| || Sbjct 1084 ATGTGCATCGCGTGTCCTACACCAAAAGGAT-TACTCGGATGGAGTGATAAATGCGCACC 1142 Query 1146 ACCTAAAACGACGCAGTTTTGCAGCGGAGGCAAGGGTAAAGCTGTCAATTATTACAAGAT 1205 |||||||||||||||||||||||||||| || | |||||||| ||||| ||||| Sbjct 1143 ACCTAAAACGACGCAGTTTTGCAGCGGA---AA----A--GCTGTCAACTATTATAAGAT 1193 Query 1206 AGTCGGTGTTGAGCATTTTACTGGGCCGTATGTTAATGATGGACAAGGCCCAACTTCTGT 1265 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1194 AGTCGGTGTTGAGCATTTTACTGGGCCTTATGTTAATGATGGACAAGGCCCAACTTCTGT 1253 Query 1266 GAACGATTGCAAGGCTAAGTGCGATCGTGATTGCAAGTGTTTGGGTTACTTCTACAAGGA 1325 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1254 GAACGATTGCAAGGCCAAGTGCGATCGTGATTGCAAGTGTTTGGGTTACTTCTACAAGGA 1313 Query 1326 GAAGGACAAGAAATGTTTGCTTGCTCCTCTTCTTGGTACACTTATCAAAGATGCCAACAC 1385 ||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1314 GAAAGACAAGAAGTGTTTGCTTGCTCCTCTTCTCGGTACACTTATCAAAGATGCCAACAC 1373 Query 1386 TTCTTCCGTTGCTTACATCAAATATTAGCG----A--G-A---TTTATAAACCGAAACCA 1435 |||||| |||||||| |||||||||||| | | | | |||||| |||||| | Sbjct 1374 TTCTTCTGTTGCTTATATCAAATATTAGTGTTTTATCGCAAGGTTTATATACCGAATTCT 1433 Query 1436 ACGTGAATTCTCATAGATTTAATGAATAATTGGTGT 1471 || |||||||| | ||| |||||||||||||||||| Sbjct 1434 ACTTGAATTCTTAGAGAATTAATGAATAATTGGTGT 1469 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63382167680 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5