BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G79040.1 Length=720 Score E Sequences producing significant alignments: (Bits) Value Ahg477073 jgi|Araly1|477073|fgenesh2_kg.2__2203__AT1G79040.1 948 0.0 > Ahg477073 jgi|Araly1|477073|fgenesh2_kg.2__2203__AT1G79040.1 Length=661 Score = 948 bits (513), Expect = 0.0 Identities = 592/629 (94%), Gaps = 10/629 (2%) Strand=Plus/Plus Query 35 GAGAAGAATAGTTTGATCATCTTGTGAGAAAAATAATGGCTGCTTCAGTGATGCTATCTT 94 ||||| |||||||||||||||||||||| |||||||||||||||||||||||||| || | Sbjct 3 GAGAATAATAGTTTGATCATCTTGTGAG-AAAATAATGGCTGCTTCAGTGATGCTTTCAT 61 Query 95 CGGTGACATTGAAACCAGCTGGTTTCACGGTGGAGAAGACGGCGGCTAGAGGATTACCGT 154 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 62 CGGTGACATTGAAACCAGCTGGTTTCACGGTGGAGAAGACGGCGGCCAGAGGATTACCGT 121 Query 155 CGCTCACAAGAGCTCGTCCCTCCTTCAAAATTGTCGCCAGTGGCGTCAAGAAGATCAAGA 214 |||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 122 CGCTAACAAGAGCTCGTCCCTCCTTCAAAATCGTCGCCAGTGGCGGCAAGAAGATCAAGA 181 Query 215 CCGACAAGCCCT-TCGGAATTAACGGCAGCATGGACTTGAGGGACGGCGTCGACGCCTCC 273 |||||||||||| | ||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 182 CCGACAAGCCCTAT-GGAATCAACGGTAGCATGGACTTGAGGGACGGCGTCGACGCCTCC 240 Query 274 GGCAGAAAGGGCAAGGGATACGGTGTTTACAAGTACGTCGACAAGTATGGAGCTAACGTC 333 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 241 GGCAGAAAGGGCAAGGGATACGGTGTTTACAAATACGTCGACAAGTATGGAGCTAACGTC 300 Query 334 GATGGATACAGTCCTATTTACAACGAGAACGAGTGGTCAGCGAGTGGTGACGTGTACAAG 393 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 301 GATGGATACAGTCCTATTTACAACGAGAACGATTGGTCAGCGAGTGGTGACGTGTACAAG 360 Query 394 GGAGGAGTCACCGGATTGGCAATTTGGGCGGTAACTCTCGCCGGAATTCTTGCCGGAGGT 453 ||||||| |||||||||||| ||||||||||| ||||||||||| ||||| |||||||| Sbjct 361 GGAGGAGCCACCGGATTGGCTATTTGGGCGGTTACTCTCGCCGGTATTCTCGCCGGAGGA 420 Query 454 GCTCTTCTTGTGTACAACACAAGTGCTTTGGCTCAGTAAATCTTAAAGTTGTTAGCGCAT 513 |||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||| Sbjct 421 GCTCTTCTTGTGTACAACACCAGTGCGTTGGCTCAGTAAATCTTTAAGTTGTTAGCGCAT 480 Query 514 GTGTAATCATGTTTCTATAAATGT-T--TCTGTGTTGTT---CTCTTTCTCTCTAATGTT 567 |||||||||||||||||||||||| | ||||||||||| |||||||||||||||||| Sbjct 481 GTGTAATCATGTTTCTATAAATGTGTCGTCTGTGTTGTTGTTCTCTTTCTCTCTAATGTT 540 Query 568 GTAAAACTCAGACATACTTTGAA-TTTATAAGACTTCTAGTGTTTGTATATATATTCATC 626 ||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 541 TTAAAACTCAGAAATACTTTCAAATTTATAAGACTTCTAGTGTTTGTATATATATTCATC 600 Query 627 TTCCTATCCTTTATGATTTCCATGCACAA 655 ||||| | |||| ||||||| |||||||| Sbjct 601 TTCCTCTTCTTTGTGATTTCGATGCACAA 629 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26495427315 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5